Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008690

Physical Location & Seq

Genomic Coordinates Forward (+)

7635536 .. 7638332

Gene Structure 2797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0097300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGGATATTGGGGCGAGTAATATGCTTGATGAAAAATGTGATGCTATTAAAATTAATATGCATATGTTAGGGTTTTGGCGGTTGCATCTTGTATATGTGTGCACGAAAGTAGTGCCAAAGCCAGAGTTGGAATCCCAGGAGAAACGGCGAAAAGTAATGGAAAGTTATAAATGGAAAAAGGAAGTGGCCGAGGGACAGTCACGTGAAAGAGGTAACATTGTCTCCTTCATCGTGTTTCTAGCTCCAGTGCCAACATTTTTCAGGGTGTACAAGAAGAAATCAACAGAAGGATTTCAATCAGTTCCATATGTATTTGCACTCTTCAGTGCAACGATCTGGATTTACTATGCATCCCTTAAATCTGATGAGATGCTTCTAATCACCATCAATGGCTTCGGTTGTGTCATCGAGACCATTTATATTGCAATGTACATTACATTTGCACCAAAGCAAGCTAGGGTGAACACCTTGAGGCTGCTTCTTCTTGTGAATTTTGGGGGATTTTGCTTGATTCTTCTTTTGTCTCACTTCCTAGCACAAGGGCCAACTCGGGTTAAAGTTCTTGGATGGGTTTGTGTAGCTTTCTCTGTCAGTGTCTTTGCAGCACCTTTAAGCATCATGAGATTGGTTATTCGCACCAAGAGCGTAGAATTCATGCCGTTTTCTCTGTCCTTCTTCCTCACCCTCAGTGCTATCATGTGGCTCTTCTATGGTTTACTCCTTAAAGATCTCTATGTTGCGGCCCCAAACATACTCGGTTTCAGCTTTGGTGTGGCTCAGATGATACTGTATGCAATTTACCGAAACAACAAAACGGTTATTGTGGACAAGGAGAAGCTACCAGAGCACAAAACAGCTGATGACATTGTGAAGCAGATTAACATCACGGTTTTGCCTACTTCTGAGGTACAAGTACAAGTAAAAGAAGAGGCCGTAAGCCCCGCCCGTGCCAATAATTCCGACGAAAGCTATGATGATCATGAGCAAAACGAACACGATCAACGTGAGCATGTTCCACAGCCATGTCACGTTGATGCTCAAGGCATCGACTTGGTCTCTAAGCAAGTCCCGGTTCTTGTTCAATGCGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RAI1

Protein Analysis

365

Amino Acids

41.52

Weight (kDa)

7.6

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	72 - 152	4.4e-25	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	188 - 272	2.7e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17620 AT4G17620 AT4G17620
fragaria_vesca	FvH4_5g20680 FvH4_5g20680
malus_domestica	MD00G1132300.v1.1 MD06G1045500.v1.1
prunus_persica	Prupe.5G053400_v2.0.a1
pyrus_communis	pycom04g04740 pycom06g03850
rosa_chinensis	RchiOBHm_Chr7g0206411
rosa_laevigata	RLG00000003314
rosa_multiflora	Rmu_sc0003652.1_g000020 Rmu_sc0005065.1_g000019
rosa_roxburghii	Rroxscaffold_3G00251540
rosa_rugosa	Rorug07G0097300
rosa_samantha	Rh7AG228700 Rh7AG228900 Rh7BG225400 Rh7CG243300 Rh7CG243500 Rh7DG235900
rosa_wichuraiana	Rw7G019700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AciI	CCGC	3 cut(s)	82, 743, 945
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	493, 653
AcuI	CTGAAG	1 cut(s)	310
AcvI	CACGTG	1 cut(s)	206
AfaI	GTAC	4 cut(s)	272, 434, 912, 918
AgsI	TTSAA	2 cut(s)	299, 1085
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	7 cut(s)	245, 458, 584, 768, 841, 860, 972
AluI	AGCT	7 cut(s)	245, 458, 584, 768, 841, 860, 972
Alw21I	GWGCWC	2 cut(s)	107, 852
Alw26I	GTCTC	4 cut(s)	229, 407, 531, 1063
Alw44I	GTGCAC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	4 cut(s)	189, 545, 744, 933
ApaLI	GTGCAC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	478, 605
ApoI	RAATTY	2 cut(s)	493, 653
AseI	ATTAAT	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	2 cut(s)	545, 745
AsuC2I	CCSGG	1 cut(s)	1073
AsuHPI	GGTGA	3 cut(s)	376, 475, 676
AvaI	CYCGRG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	107
BbrPI	CACGTG	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	107, 852
BbvI	GCAGC	2 cut(s)	465, 617
BccI	CCATC	2 cut(s)	395, 564
BceAI	ACGGC	3 cut(s)	164, 646, 920
BcgI	CGANNNNNNTGC	4 cut(s)	7, 41, 97, 131
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	1 cut(s)	979
BcnI	CCSGG	1 cut(s)	1073
BcoDI	GTCTC	4 cut(s)	229, 407, 531, 1063
BfaI	CTAG	3 cut(s)	242, 459, 536
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	3 cut(s)	479, 606, 744
BlsI	GCNGC	3 cut(s)	480, 607, 745
Bme1390I	CCNGG	2 cut(s)	140, 1073
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	2 cut(s)	545, 745
BmiI	GGNNCC	1 cut(s)	747
BmrFI	CCNGG	2 cut(s)	140, 1073
BmsI	GCATC	7 cut(s)	34, 97, 362, 363, 627, 1027, 1056
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	493, 1026
BpuMI	CCSGG	1 cut(s)	1073
BsaAI	YACGTR	1 cut(s)	206
BsaBI	GATNNNNATC	2 cut(s)	298, 884
BsaI	GGTCTC	2 cut(s)	407, 1063
BsaJI	CCNNGG	2 cut(s)	138, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	435
Bse8I	GATNNNNATC	2 cut(s)	298, 884
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	138, 192
BseGI	GGATG	2 cut(s)	353, 575
BseJI	GATNNNNATC	2 cut(s)	298, 884
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	3 cut(s)	703, 794, 897
BseNI	ACTGG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	465, 617
BshFI	GGCC	4 cut(s)	191, 547, 746, 935
BsiHKAI	GWGCWC	2 cut(s)	107, 852
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	1073
BslFI	GGGAC	2 cut(s)	210, 1055
BsmAI	GTCTC	4 cut(s)	229, 407, 531, 1063
BsmFI	GGGAC	2 cut(s)	210, 1055
BsnI	GGCC	4 cut(s)	191, 547, 746, 935
Bso31I	GGTCTC	2 cut(s)	407, 1063
BsoBI	CYCGRG	1 cut(s)	552
Bsp1286I	GDGCHC	2 cut(s)	107, 852
Bsp1407I	TGTACA	2 cut(s)	270, 432
Bsp143I	GATC	4 cut(s)	336, 730, 979, 1000
BspACI	CCGC	3 cut(s)	82, 743, 945
BspANI	GGCC	4 cut(s)	191, 547, 746, 935
BspCNI	CTCAG	3 cut(s)	702, 793, 898
BspHI	TCATGA	2 cut(s)	621, 982
BspLI	GGNNCC	1 cut(s)	747
BspQI	GCTCTTC	1 cut(s)	713
BspTNI	GGTCTC	2 cut(s)	407, 1063
BsrDI	GCAATG	1 cut(s)	435
BsrGI	TGTACA	2 cut(s)	270, 432
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	138, 192
BssMI	GATC	4 cut(s)	336, 730, 979, 1000
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	4 cut(s)	201, 792, 820, 892
Bst6I	CTCTTC	3 cut(s)	329, 713, 924
BstAUI	TGTACA	2 cut(s)	270, 432
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	4 cut(s)	689, 780, 906, 1062
BstF5I	GGATG	2 cut(s)	353, 575
BstKTI	GATC	4 cut(s)	339, 733, 982, 1003
BstMAI	GTCTC	4 cut(s)	229, 407, 531, 1063
BstMBI	GATC	4 cut(s)	336, 730, 979, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	645, 847
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	1016
BstSCI	CCNGG	2 cut(s)	138, 1071
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	465, 617
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
BsuRI	GGCC	4 cut(s)	191, 547, 746, 935
BtsCI	GGATG	2 cut(s)	353, 575
BtsIMutI	CAGTG	4 cut(s)	255, 334, 601, 697
Cac8I	GCNNGC	1 cut(s)	456
CciI	TCATGA	2 cut(s)	621, 982
Cfr13I	GGNCC	2 cut(s)	545, 745
Csp6I	GTAC	4 cut(s)	271, 433, 911, 917
CviAII	CATG	6 cut(s)	622, 658, 700, 983, 1013, 1026
CviQI	GTAC	4 cut(s)	271, 433, 911, 917
DdeI	CTNAG	4 cut(s)	689, 780, 906, 1062
DpnI	GATC	4 cut(s)	338, 732, 981, 1002
DpnII	GATC	4 cut(s)	336, 730, 979, 1000
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	3 cut(s)	329, 713, 924
EarI	CTCTTC	3 cut(s)	329, 713, 924
Eco31I	GGTCTC	2 cut(s)	407, 1063
Eco57I	CTGAAG	1 cut(s)	310
Eco72I	CACGTG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	653
EcoRII	CCWGG	1 cut(s)	138
EcoT22I	ATGCAT	2 cut(s)	66, 355
FaeI	CATG	6 cut(s)	625, 661, 703, 986, 1016, 1029
FaqI	GGGAC	2 cut(s)	210, 1055
FatI	CATG	6 cut(s)	621, 657, 699, 982, 1012, 1025
FauI	CCCGC	1 cut(s)	952
FauNDI	CATATG	2 cut(s)	66, 310
FbaI	TGATCA	1 cut(s)	979
Fnu4HI	GCNGC	3 cut(s)	479, 606, 744
FokI	GGATG	2 cut(s)	340, 582
Fsp4HI	GCNGC	3 cut(s)	479, 606, 744
FspBI	CTAG	3 cut(s)	242, 459, 536
GluI	GCNGC	3 cut(s)	479, 606, 744
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	4 cut(s)	191, 547, 746, 935
HapII	CCGG	1 cut(s)	1073
Hin1II	CATG	6 cut(s)	625, 661, 703, 986, 1016, 1029
HinfI	GANTC	2 cut(s)	134, 514
HpaII	CCGG	1 cut(s)	1073
HphI	GGTGA	3 cut(s)	376, 475, 676
Hpy166II	GTNNAC	5 cut(s)	105, 271, 466, 719, 829
Hpy188I	TCNGA	4 cut(s)	367, 783, 907, 964
Hpy188III	TCNNGA	4 cut(s)	340, 412, 622, 983
Hpy8I	GTNNAC	5 cut(s)	105, 271, 466, 719, 829
Hpy99I	CGWCG	1 cut(s)	968
HpyAV	CCTTC	3 cut(s)	238, 284, 685
HpyCH4III	ACNGT	4 cut(s)	201, 792, 820, 892
HpyCH4IV	ACGT	3 cut(s)	205, 1006, 1032
HpyF10VI	GCNNNNNNNGC	2 cut(s)	645, 847
HpyF3I	CTNAG	4 cut(s)	689, 780, 906, 1062
HpySE526I	ACGT	3 cut(s)	205, 1006, 1032
Hsp92II	CATG	6 cut(s)	625, 661, 703, 986, 1016, 1029
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	4 cut(s)	336, 730, 979, 1000
LguI	GCTCTTC	1 cut(s)	713
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	8 cut(s)	125, 138, 152, 250, 261, 325, 858, 1086
Lsp1109I	GCAGC	2 cut(s)	465, 617
LweI	GCATC	7 cut(s)	34, 97, 362, 363, 627, 1027, 1056
MaeI	CTAG	3 cut(s)	242, 459, 536
MaeII	ACGT	3 cut(s)	205, 1006, 1032
MaeIII	GTNAC	3 cut(s)	201, 215, 1028
MalI	GATC	4 cut(s)	338, 732, 981, 1002
MboI	GATC	4 cut(s)	336, 730, 979, 1000
MboII	GAAGA	7 cut(s)	289, 316, 476, 509, 670, 700, 941
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	2 cut(s)	107, 852
MluCI	AATT	5 cut(s)	54, 493, 653, 798, 958
MmeI	TCCRAC	2 cut(s)	111, 987
MnlI	CCTC	7 cut(s)	187, 206, 468, 692, 698, 901, 925
Mph1103I	ATGCAT	2 cut(s)	66, 355
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	7 cut(s)	51, 57, 360, 558, 614, 726, 882
MslI	CAYNNNNRTG	2 cut(s)	1024, 1035
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	1 cut(s)	1073
MspR9I	CCNGG	2 cut(s)	140, 1073
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	645, 847
NciI	CCSGG	1 cut(s)	1073
NdeI	CATATG	2 cut(s)	66, 310
NdeII	GATC	4 cut(s)	336, 730, 979, 1000
NlaIII	CATG	6 cut(s)	625, 661, 703, 986, 1016, 1029
NlaIV	GGNNCC	1 cut(s)	747
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	201, 1028
NsiI	ATGCAT	2 cut(s)	66, 355
NspI	RCATGY	1 cut(s)	1016
PagI	TCATGA	2 cut(s)	621, 982
PciSI	GCTCTTC	1 cut(s)	713
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	134, 514
PflFI	GACNNNGTC	1 cut(s)	1055
PkrI	GCNGC	3 cut(s)	480, 607, 745
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	138
PspCI	CACGTG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	747
PspPI	GGNCC	2 cut(s)	545, 745
PsuI	RGATCY	1 cut(s)	730
PsyI	GACNNNGTC	1 cut(s)	1055
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	4 cut(s)	272, 434, 912, 918
RsaNI	GTAC	4 cut(s)	271, 433, 911, 917
RseI	CAYNNNNRTG	2 cut(s)	1024, 1035
SapI	GCTCTTC	1 cut(s)	713
SaqAI	TTAA	7 cut(s)	51, 57, 360, 558, 614, 726, 882
SatI	GCNGC	3 cut(s)	479, 606, 744
Sau3AI	GATC	4 cut(s)	336, 730, 979, 1000
Sau96I	GGNCC	2 cut(s)	545, 745
ScrFI	CCNGG	2 cut(s)	140, 1073
SduI	GDGCHC	2 cut(s)	107, 852
SfaNI	GCATC	7 cut(s)	34, 97, 362, 363, 627, 1027, 1056
SmiMI	CAYNNNNRTG	2 cut(s)	1024, 1035
SmlI	CTYRAG	2 cut(s)	472, 1041
SmoI	CTYRAG	2 cut(s)	472, 1041
Sse9I	AATT	5 cut(s)	54, 493, 653, 798, 958
SsiI	CCGC	3 cut(s)	82, 743, 945
SspMI	CTAG	3 cut(s)	242, 459, 536
StyD4I	CCNGG	2 cut(s)	138, 1071
TaaI	ACNGT	4 cut(s)	201, 792, 820, 892
TaiI	ACGT	3 cut(s)	208, 1009, 1035
TaqI	TCGA	2 cut(s)	411, 1050
TasI	AATT	5 cut(s)	54, 493, 653, 798, 958
TatI	WGTACW	3 cut(s)	270, 432, 916
TauI	GCSGC	1 cut(s)	746
TfiI	GAWTC	2 cut(s)	134, 514
Tru1I	TTAA	7 cut(s)	51, 57, 360, 558, 614, 726, 882
Tru9I	TTAA	7 cut(s)	51, 57, 360, 558, 614, 726, 882
TscAI	CASTG	4 cut(s)	255, 334, 601, 697
TseFI	GTSAC	2 cut(s)	201, 1028
TseI	GCWGC	2 cut(s)	478, 605
Tsp45I	GTSAC	2 cut(s)	201, 1028
TspDTI	ATGAA	3 cut(s)	48, 220, 646
TspRI	CASTG	4 cut(s)	255, 334, 601, 697
Tth111I	GACNNNGTC	1 cut(s)	1055
VneI	GTGCAC	1 cut(s)	103
VspI	ATTAAT	1 cut(s)	57
XapI	RAATTY	2 cut(s)	493, 653
XceI	RCATGY	1 cut(s)	1016
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	3 cut(s)	242, 459, 536
Zsp2I	ATGCAT	2 cut(s)	66, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.