Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008690

Physical Location & Seq

Genomic Coordinates Forward (+)

4789424 .. 4793382

Gene Structure 3959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGATTTTTCAGAACACCACAAAAATATCTTCGGGCCAGACTACGACGACGACGACGACGGTAATAAACAAGATGGGGCCGGTTCATCCTCACCGTCCTCCTCCTCATCGTCGTCTTCGTCCTCATCTTCGTCCTCATCGGCTTCTTCTTCATCCAACGAAGGAGGCGAGTCCAGCAGTGGGAATAGCCCGAGCGCAAGCAGTGGCGGCGGCGCTGGTGGTGGGGAAGAAGAGGTAGAGAATGGCGAAGAGGCTGATTATTCAAATGCCGCAACCGATGACAATGAGTATAGCAATATGGGTTATTTTGGGGAGGACGACAAGGATCTGTTTGGCTCTGACAACGAAGATTACTGTAAAACCCCTGCTACTAGTCCTTTCCCTATTCCTGTATTGCCTGTCATACGCAATACGAATAATCAGGGTAGAGGGAATTCAGGGCGTGGTCGTTGGCCATCTGGACGTCCAAATGATAGAGGTGCAGGCATCCTTGGTCGAGGTGGACCTTTTCAGCAGAGGCAAAATTTTGGATATGGTGGCTCAAATGGTTATCGCGATGAACGTTTTGTCTCGGAACTAAGACTACTTTCAAAGAGCGAAGAAACACTGTCAAGAAAGGCCGTTGCATTTCAGGAACCCTGTGAGCTTGCTTGCTATAGTCGGGTAGAAGGTGGAGATGTCAGCTTTGACGAGACCAGTTTGAGGCTTTTCAAGCGTCTTATTACTGAAGAAATTGGAAGAGATCTGAATGAAGGTTATGATACTTTTATTGCGAAGAAAGATTTGGGCTCTCAAGGTTTTGGTGACCTTCTCGACTGCATAAGAGACAAGAATATTCCACTTCAAAACATTCATTTTGTGACTTATCGCAACAATCTTAATAAGATATTGGCCACTTTTTATAATAAAAGGGATCCTTGGGAGATGGGAGTGCATAAAAGGAATGGGGTTGTCTATCTTGATGTGCATAAACTACCTGAAAGGCCACAGACTGAGTTGGATCGAAGAAGGTGTTACTGGGGGTATTGTTTTGAGAGTCTTGCCACTGAAGATCCAGGACGAGGTGATGGAGGGATACATCATGTTGATGCCAATGTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RAI1

Protein Analysis

368

Amino Acids

40.13

Weight (kDa)

4.75

Isoelectric Point (pI)

61.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17620 AT4G17620 AT4G17620
fragaria_vesca	FvH4_5g20680 FvH4_5g20680
malus_domestica	MD00G1132300.v1.1 MD06G1045500.v1.1
prunus_persica	Prupe.5G053400_v2.0.a1
pyrus_communis	pycom04g04740 pycom06g03850
rosa_chinensis	RchiOBHm_Chr7g0206411
rosa_laevigata	RLG00000003314
rosa_multiflora	Rmu_sc0003652.1_g000020 Rmu_sc0005065.1_g000019
rosa_roxburghii	Rroxscaffold_3G00251540
rosa_rugosa	Rorug07G0097300
rosa_samantha	Rh7AG228700 Rh7AG228900 Rh7BG225400 Rh7CG243300 Rh7CG243500 Rh7DG235900
rosa_wichuraiana	Rw7G019700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AatII	GACGTC	1 cut(s)	466
AccII	CGCG	1 cut(s)	555
AciI	CCGC	3 cut(s)	207, 210, 270
AclI	AACGTT	1 cut(s)	562
AclWI	GGATC	5 cut(s)	333, 908, 921, 1008, 1046
AcoI	YGGCCR	2 cut(s)	452, 891
AcsI	RAATTY	2 cut(s)	433, 523
AcuI	CTGAAG	2 cut(s)	747, 1068
AcyI	GRCGYC	1 cut(s)	463
AfiI	CCNNNNNNNGG	3 cut(s)	180, 702, 1061
AgsI	TTSAA	5 cut(s)	264, 591, 712, 845, 1100
AhlI	ACTAGT	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	1054
AjuI	GAANNNNNNNTTGG	2 cut(s)	767, 799
AluBI	AGCT	2 cut(s)	646, 684
AluI	AGCT	2 cut(s)	646, 684
Alw26I	GTCTC	3 cut(s)	574, 686, 819
AlwI	GGATC	5 cut(s)	333, 908, 921, 1008, 1046
Ama87I	CYCGRG	1 cut(s)	190
AoxI	GGCC	6 cut(s)	35, 78, 452, 618, 891, 983
ApoI	RAATTY	2 cut(s)	433, 523
AspLEI	GCGC	2 cut(s)	197, 215
AspS9I	GGNCC	3 cut(s)	35, 78, 503
AsuHPI	GGTGA	3 cut(s)	84, 815, 1076
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	503
BalI	TGGCCA	2 cut(s)	454, 893
BamHI	GGATCC	1 cut(s)	913
BanII	GRGCYC	1 cut(s)	791
BbsI	GAAGAC	1 cut(s)	108
BccI	CCATC	4 cut(s)	68, 463, 919, 1061
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	1 cut(s)	1056
BciVI	GTATCC	1 cut(s)	1068
BcoDI	GTCTC	3 cut(s)	574, 686, 819
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	655
BfoI	RGCGCY	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	1068
BglII	AGATCT	1 cut(s)	742
BisI	GCNGC	3 cut(s)	208, 211, 270
BlsI	GCNGC	3 cut(s)	209, 212, 271
Bme1390I	CCNGG	1 cut(s)	1056
Bme18I	GGWCC	1 cut(s)	503
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	35, 78, 503
BmiI	GGNNCC	3 cut(s)	79, 636, 915
BmrFI	CCNGG	1 cut(s)	1056
BmrI	ACTGGG	1 cut(s)	1027
BmsI	GCATC	2 cut(s)	495, 1078
BmuI	ACTGGG	1 cut(s)	1027
BpiI	GAAGAC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	490, 917
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 702, 1061
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	696, 1022
BseBI	CCWGG	1 cut(s)	1056
BseDI	CCNNGG	2 cut(s)	490, 917
BseGI	GGATG	3 cut(s)	86, 152, 486
BseLI	CCNNNNNNNGG	3 cut(s)	180, 702, 1061
BseMII	CTCAG	1 cut(s)	984
BseNI	ACTGG	2 cut(s)	696, 1022
BseRI	GAGGAG	2 cut(s)	91, 94
BsgI	GTGCAG	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	6 cut(s)	37, 80, 454, 620, 893, 985
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	3 cut(s)	180, 702, 1061
BsmAI	GTCTC	3 cut(s)	574, 686, 819
BsnI	GGCC	6 cut(s)	37, 80, 454, 620, 893, 985
Bso31I	GGTCTC	1 cut(s)	686
BsoBI	CYCGRG	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	791
Bsp143I	GATC	5 cut(s)	325, 742, 913, 1000, 1051
Bsp68I	TCGCGA	1 cut(s)	555
BspACI	CCGC	3 cut(s)	207, 210, 270
BspANI	GGCC	6 cut(s)	37, 80, 454, 620, 893, 985
BspCNI	CTCAG	1 cut(s)	985
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	3 cut(s)	79, 636, 915
BspPI	GGATC	5 cut(s)	333, 908, 921, 1008, 1046
BspTNI	GGTCTC	1 cut(s)	686
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	696, 1022
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	490, 917
BssMI	GATC	5 cut(s)	325, 742, 913, 1000, 1051
BssNI	GRCGYC	1 cut(s)	463
BssT1I	CCWWGG	2 cut(s)	490, 917
Bst2UI	CCWGG	1 cut(s)	1056
Bst4CI	ACNGT	4 cut(s)	62, 96, 356, 609
Bst6I	CTCTTC	3 cut(s)	225, 243, 733
BstACI	GRCGYC	1 cut(s)	463
BstC8I	GCNNGC	4 cut(s)	199, 484, 648, 652
BstDEI	CTNAG	2 cut(s)	578, 993
BstEII	GGTNACC	1 cut(s)	803
BstF5I	GGATG	3 cut(s)	86, 152, 486
BstFNI	CGCG	1 cut(s)	555
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	2 cut(s)	197, 215
BstKTI	GATC	5 cut(s)	328, 745, 916, 1003, 1054
BstMAI	GTCTC	3 cut(s)	574, 686, 819
BstMBI	GATC	5 cut(s)	325, 742, 913, 1000, 1051
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 207, 712
BstNI	CCWGG	1 cut(s)	1056
BstPI	GGTNACC	1 cut(s)	803
BstSCI	CCNGG	1 cut(s)	1054
BstSFI	CTRYAG	1 cut(s)	655
BstUI	CGCG	1 cut(s)	555
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	4 cut(s)	325, 742, 913, 1051
BstYI	RGATCY	4 cut(s)	325, 742, 913, 1051
BsuI	GTATCC	1 cut(s)	1068
BsuRI	GGCC	6 cut(s)	37, 80, 454, 620, 893, 985
BtgZI	GCGATG	1 cut(s)	570
BtsCI	GGATG	3 cut(s)	86, 152, 486
BtsI	GCAGTG	2 cut(s)	184, 208
BtsIMutI	CAGTG	4 cut(s)	184, 208, 605, 1044
BtuMI	TCGCGA	1 cut(s)	555
Cac8I	GCNNGC	4 cut(s)	199, 484, 648, 652
CfoI	GCGC	2 cut(s)	197, 215
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	35, 78, 503
CseI	GACGC	1 cut(s)	704
CviAII	CATG	1 cut(s)	1082
DdeI	CTNAG	2 cut(s)	578, 993
DpnI	GATC	5 cut(s)	327, 744, 915, 1002, 1053
DpnII	GATC	5 cut(s)	325, 742, 913, 1000, 1051
EaeI	YGGCCR	2 cut(s)	452, 891
Eam1104I	CTCTTC	3 cut(s)	225, 243, 733
EarI	CTCTTC	3 cut(s)	225, 243, 733
Eco130I	CCWWGG	2 cut(s)	490, 917
Eco24I	GRGCYC	1 cut(s)	791
Eco31I	GGTCTC	1 cut(s)	686
Eco47I	GGWCC	1 cut(s)	503
Eco57I	CTGAAG	2 cut(s)	747, 1068
Eco88I	CYCGRG	1 cut(s)	190
Eco91I	GGTNACC	1 cut(s)	803
EcoO65I	GGTNACC	1 cut(s)	803
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	1054
EcoT14I	CCWWGG	2 cut(s)	490, 917
EcoT38I	GRGCYC	1 cut(s)	791
ErhI	CCWWGG	2 cut(s)	490, 917
FaeI	CATG	1 cut(s)	1085
FalI	AAGNNNNNCTT	2 cut(s)	901, 933
FatI	CATG	1 cut(s)	1081
Fnu4HI	GCNGC	3 cut(s)	208, 211, 270
FokI	GGATG	3 cut(s)	73, 139, 473
FriOI	GRGCYC	1 cut(s)	791
Fsp4HI	GCNGC	3 cut(s)	208, 211, 270
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	2 cut(s)	196, 214
GluI	GCNGC	3 cut(s)	208, 211, 270
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	6 cut(s)	37, 80, 454, 620, 893, 985
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	704
HhaI	GCGC	2 cut(s)	197, 215
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	1 cut(s)	1085
Hin6I	GCGC	2 cut(s)	195, 213
HinP1I	GCGC	2 cut(s)	195, 213
HinfI	GANTC	2 cut(s)	170, 1036
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	3 cut(s)	84, 815, 1076
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	4 cut(s)	13, 340, 574, 747
Hpy188III	TCNNGA	6 cut(s)	459, 554, 612, 632, 812, 959
Hpy8I	GTNNAC	1 cut(s)	503
Hpy99I	CGWCG	6 cut(s)	50, 53, 56, 59, 62, 115
HpyAV	CCTTC	5 cut(s)	155, 662, 746, 818, 1002
HpyCH4III	ACNGT	4 cut(s)	62, 96, 356, 609
HpyCH4IV	ACGT	2 cut(s)	463, 562
HpyCH4V	TGCA	5 cut(s)	482, 626, 819, 934, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 207, 712
HpyF3I	CTNAG	2 cut(s)	578, 993
HpySE526I	ACGT	2 cut(s)	463, 562
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	1 cut(s)	1085
HspAI	GCGC	2 cut(s)	195, 213
Kzo9I	GATC	5 cut(s)	325, 742, 913, 1000, 1051
LweI	GCATC	2 cut(s)	495, 1078
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	2 cut(s)	463, 562
MaeIII	GTNAC	3 cut(s)	803, 859, 1013
MalI	GATC	5 cut(s)	327, 744, 915, 1002, 1053
MboI	GATC	5 cut(s)	325, 742, 913, 1000, 1051
MflI	RGATCY	4 cut(s)	325, 742, 913, 1051
MhlI	GDGCHC	1 cut(s)	791
MlsI	TGGCCA	2 cut(s)	454, 893
MluCI	AATT	3 cut(s)	433, 523, 732
MluNI	TGGCCA	2 cut(s)	454, 893
MlyI	GAGTC	2 cut(s)	179, 1045
MmeI	TCCRAC	2 cut(s)	180, 978
Mox20I	TGGCCA	2 cut(s)	454, 893
MscI	TGGCCA	2 cut(s)	454, 893
MseI	TTAA	1 cut(s)	879
MslI	CAYNNNNRTG	1 cut(s)	1086
Msp20I	TGGCCA	2 cut(s)	454, 893
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	1056
MvaI	CCWGG	1 cut(s)	1056
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	3 cut(s)	174, 207, 712
NdeII	GATC	5 cut(s)	325, 742, 913, 1000, 1051
NlaIII	CATG	1 cut(s)	1085
NlaIV	GGNNCC	3 cut(s)	79, 636, 915
NmuCI	GTSAC	2 cut(s)	803, 859
NruI	TCGCGA	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	5 cut(s)	51, 54, 116, 165, 559
PfoI	TCCNGGA	1 cut(s)	1054
PkrI	GCNGC	3 cut(s)	209, 212, 271
PleI	GAGTC	2 cut(s)	178, 1044
PpsI	GAGTC	2 cut(s)	178, 1044
PsiI	TTATAA	1 cut(s)	903
Psp1406I	AACGTT	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	1054
PspEI	GGTNACC	1 cut(s)	803
PspGI	CCWGG	1 cut(s)	1054
PspN4I	GGNNCC	3 cut(s)	79, 636, 915
PspPI	GGNCC	3 cut(s)	35, 78, 503
PsrI	GAACNNNNNNTAC	2 cut(s)	567, 599
PsuI	RGATCY	4 cut(s)	325, 742, 913, 1051
RruI	TCGCGA	1 cut(s)	555
RseI	CAYNNNNRTG	1 cut(s)	1086
SaqAI	TTAA	1 cut(s)	879
SatI	GCNGC	3 cut(s)	208, 211, 270
Sau3AI	GATC	5 cut(s)	325, 742, 913, 1000, 1051
Sau96I	GGNCC	3 cut(s)	35, 78, 503
SchI	GAGTC	2 cut(s)	179, 1045
ScrFI	CCNGG	1 cut(s)	1056
SduI	GDGCHC	1 cut(s)	791
SfaNI	GCATC	2 cut(s)	495, 1078
SfcI	CTRYAG	1 cut(s)	655
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	1086
SmlI	CTYRAG	1 cut(s)	792
SmoI	CTYRAG	1 cut(s)	792
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	3 cut(s)	433, 523, 732
SsiI	CCGC	3 cut(s)	207, 210, 270
SspI	AATATT	1 cut(s)	835
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	1054
StyI	CCWWGG	2 cut(s)	490, 917
TaaI	ACNGT	4 cut(s)	62, 96, 356, 609
TaiI	ACGT	2 cut(s)	466, 565
TaqI	TCGA	3 cut(s)	496, 813, 1003
TasI	AATT	3 cut(s)	433, 523, 732
TauI	GCSGC	3 cut(s)	210, 213, 272
Tru1I	TTAA	1 cut(s)	879
Tru9I	TTAA	1 cut(s)	879
TscAI	CASTG	4 cut(s)	184, 208, 612, 1051
TseFI	GTSAC	2 cut(s)	803, 859
Tsp45I	GTSAC	2 cut(s)	803, 859
TspDTI	ATGAA	5 cut(s)	75, 141, 573, 765, 842
TspRI	CASTG	4 cut(s)	184, 208, 612, 1051
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	2 cut(s)	433, 523
XspI	CTAG	1 cut(s)	372
ZraI	GACGTC	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.