Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008690

Physical Location & Seq

Genomic Coordinates Reverse (-)

21630345 .. 21635538

Gene Structure 5194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG228700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGACCTGGTAAGGGATTGGTTGCCGGAGCCAGGATATCTGGGTTCTTTCTCCTCGTTTTTGAGCGCGACTGAGGATGATGGGTGTTGCTTGGCTGGGTCAGATCTTTGGCTGGTCCAACCATCGTCGGTGGTGGCATTCTTGGAGGATGGAAATCTGGACTGTGGCTTTGACATCGGAGGAGGTGTTGACTGGCATGGTGGCATTCCTGGCTTTAGCGACAGCGGCAGCGGCAGCTTGACGGCTAACAGAGTTTGTGCAATTGGGCTAGGTGGCTTTGGACATCTACTAGGGTTTTTCAAAGCTGGGCCTATTGGGCTCCTTGGGCTTTGTTGGGACTTTAGGCTTTTTAGGAATGTTTTCATTATTTTAGTTTTGGGTCTCCATCCTTTGGTTGAGGAATTGGAGAAGGAAGTAGGAATGGAAGGAGCAGCATACTTCTCTTCCGATAAGGTTTTTGTGGTTATTACAGGGCAGAAGCAGCAGAGGTTTTCTGAGATTAGAGCTGGATTGGATGATGCTGATGGTTTGATTCGGAAAATGGACCTAGAAGCAAGAAGCTTGCAGCCGGGGGCAAAGGTGGTGCTGCTTGCAAAGTTGAGGGGGTACAAATCTGATCTCAATAAATTGGAGAGGGAGATCAAAAGAATGCAATTTGGGTTGGTTATTCCCGAATTGCCTGTGGTACGGAATAATAATCATAGTCAGGGTAGAGGGAGTTTTGGGCGTGGTCGTTGGCAAGCTGGGCATCAAAATGACAGAGGTGCTGGCATCCTTCCCCAACCTGGACCTTATCCGCAGAGGGGGCATAATTACGGCTATGGAAAGTTCTCAAATGGTCGTCATGACGAACGTTTCGTTTCTGAACTAAGGCTGTCAAAGAGTGAAGAAACACTATCAAGAAAGGTTATTCAGATTCAGGAACCCTGTGAACTTGCTTGCTATAGTCGGGTAGAAGGTGGAGATGTCAACTTTGATGAGAGCAGCTTGAGGCTTTTCAAGCGGCTTATTACTGAAGACATTGGAGCCGATCTTAATCAAGGCTTTGATACTTTCATTGCAAAGAAAGATTTGGGCTCTCAAGGTTTTGGTGACCTTCTTGCCTGCATCAGAGACAAGAATATTCCACTTCAAAATATTCATTTTGTGGTGAGAACAAATTACTTTGTAAGCTTTCCTATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RAI1

Protein Analysis

395

Amino Acids

43.57

Weight (kDa)

5.82

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	159 - 216	4.7e-14	Vesicle transport v-SNARE protein N-terminus
RAI1	PF08652	307 - 375	6.7e-09	RAI1 like PD-(D/E)XK nuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17620 AT4G17620 AT4G17620
fragaria_vesca	FvH4_5g20680 FvH4_5g20680
malus_domestica	MD00G1132300.v1.1 MD06G1045500.v1.1
prunus_persica	Prupe.5G053400_v2.0.a1
pyrus_communis	pycom04g04740 pycom06g03850
rosa_chinensis	RchiOBHm_Chr7g0206411
rosa_laevigata	RLG00000003314
rosa_multiflora	Rmu_sc0003652.1_g000020 Rmu_sc0005065.1_g000019
rosa_roxburghii	Rroxscaffold_3G00251540
rosa_rugosa	Rorug07G0097300
rosa_samantha	Rh7AG228700 Rh7AG228900 Rh7BG225400 Rh7CG243300 Rh7CG243500 Rh7DG235900
rosa_wichuraiana	Rw7G019700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AccII	CGCG	1 cut(s)	68
AciI	CCGC	4 cut(s)	225, 231, 797, 1003
AclI	AACGTT	1 cut(s)	853
AcuI	CTGAAG	1 cut(s)	1035
AfaI	GTAC	2 cut(s)	608, 687
AfiI	CCNNNNNNNGG	5 cut(s)	13, 32, 391, 785, 803
AgsI	TTSAA	3 cut(s)	301, 1000, 1133
AjnI	CCWGG	4 cut(s)	6, 31, 208, 784
AluBI	AGCT	7 cut(s)	237, 305, 506, 561, 743, 987, 1173
AluI	AGCT	7 cut(s)	237, 305, 506, 561, 743, 987, 1173
Alw26I	GTCTC	2 cut(s)	386, 1107
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	7 cut(s)	228, 234, 431, 481, 565, 586, 984
ArsI	GACNNNNNNTTYG	4 cut(s)	152, 184, 839, 871
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	5 cut(s)	4, 115, 308, 544, 788
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	2 cut(s)	1103, 1162
AvaII	GGWCC	4 cut(s)	4, 115, 544, 788
BanII	GRGCYC	2 cut(s)	321, 1079
BbsI	GAAGAC	1 cut(s)	1023
BbvI	GCAGC	7 cut(s)	240, 246, 443, 493, 573, 577, 996
BccI	CCATC	5 cut(s)	74, 130, 143, 393, 518
BceAI	ACGGC	2 cut(s)	258, 832
BciT130I	CCWGG	4 cut(s)	8, 33, 210, 786
BcnI	CCSGG	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	386, 1107
BfaI	CTAG	3 cut(s)	269, 290, 548
BfmI	CTRYAG	1 cut(s)	943
BglI	GCCNNNNNGGC	1 cut(s)	316
BglII	AGATCT	1 cut(s)	103
Bme1390I	CCNGG	5 cut(s)	8, 33, 210, 570, 786
Bme18I	GGWCC	4 cut(s)	4, 115, 544, 788
BmgT120I	GGNCC	5 cut(s)	4, 115, 308, 544, 788
BmiI	GGNNCC	4 cut(s)	30, 320, 924, 1027
BmrFI	CCNGG	5 cut(s)	8, 33, 210, 570, 786
BmsI	GCATC	4 cut(s)	508, 757, 780, 1116
BpiI	GAAGAC	1 cut(s)	1023
BpuEI	CTTGAG	2 cut(s)	1009, 1065
BpuMI	CCSGG	1 cut(s)	570
BsaBI	GATNNNNATC	2 cut(s)	153, 1035
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	322, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	5 cut(s)	13, 32, 391, 785, 803
Bse1I	ACTGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	1056
Bse8I	GATNNNNATC	2 cut(s)	153, 1035
BseBI	CCWGG	4 cut(s)	8, 33, 210, 786
BseDI	CCNNGG	2 cut(s)	322, 569
BseGI	GGATG	5 cut(s)	82, 154, 385, 520, 771
BseJI	GATNNNNATC	2 cut(s)	153, 1035
BseLI	CCNNNNNNNGG	5 cut(s)	13, 32, 391, 785, 803
BseMI	GCAATG	1 cut(s)	1056
BseMII	CTCAG	2 cut(s)	63, 486
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	2 cut(s)	43, 195
BseXI	GCAGC	7 cut(s)	240, 246, 443, 493, 573, 577, 996
BseYI	CCCAGC	3 cut(s)	95, 305, 743
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	26, 569
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	5 cut(s)	13, 32, 391, 785, 803
BsmAI	GTCTC	2 cut(s)	386, 1107
BsmFI	GGGAC	1 cut(s)	350
BsmI	GAATGC	3 cut(s)	137, 204, 654
BsnI	GGCC	1 cut(s)	310
Bso31I	GGTCTC	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	321, 1079
Bsp143I	GATC	4 cut(s)	103, 616, 639, 1030
BspACI	CCGC	4 cut(s)	225, 231, 797, 1003
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	2 cut(s)	64, 487
BspFNI	CGCG	1 cut(s)	68
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	4 cut(s)	30, 320, 924, 1027
BspTNI	GGTCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	1056
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	322, 569
BssMI	GATC	4 cut(s)	103, 616, 639, 1030
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	4 cut(s)	8, 33, 210, 786
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	448
BstC8I	GCNNGC	6 cut(s)	563, 591, 741, 769, 940, 1105
BstDEI	CTNAG	3 cut(s)	72, 495, 869
BstEII	GGTNACC	1 cut(s)	1091
BstF5I	GGATG	5 cut(s)	82, 154, 385, 520, 771
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	4 cut(s)	106, 619, 642, 1033
BstMAI	GTCTC	2 cut(s)	386, 1107
BstMBI	GATC	4 cut(s)	103, 616, 639, 1030
BstNI	CCWGG	4 cut(s)	8, 33, 210, 786
BstPI	GGTNACC	1 cut(s)	1091
BstSCI	CCNGG	5 cut(s)	6, 31, 208, 568, 784
BstSFI	CTRYAG	1 cut(s)	943
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	7 cut(s)	240, 246, 443, 493, 573, 577, 996
BstV2I	GAAGAC	1 cut(s)	1023
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	310
BtsCI	GGATG	5 cut(s)	82, 154, 385, 520, 771
Cac8I	GCNNGC	6 cut(s)	563, 591, 741, 769, 940, 1105
CciI	TCATGA	1 cut(s)	844
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	5 cut(s)	4, 115, 308, 544, 788
CsiI	ACCWGGT	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	607, 686
CviAII	CATG	3 cut(s)	197, 845, 1183
CviQI	GTAC	2 cut(s)	607, 686
DdeI	CTNAG	3 cut(s)	72, 495, 869
DpnI	GATC	4 cut(s)	105, 618, 641, 1032
DpnII	GATC	4 cut(s)	103, 616, 639, 1030
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	322
Eco24I	GRGCYC	2 cut(s)	321, 1079
Eco31I	GGTCTC	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	38
Eco47I	GGWCC	4 cut(s)	4, 115, 544, 788
Eco57I	CTGAAG	1 cut(s)	1035
Eco91I	GGTNACC	1 cut(s)	1091
EcoO65I	GGTNACC	1 cut(s)	1091
EcoRII	CCWGG	4 cut(s)	6, 31, 208, 784
EcoRV	GATATC	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	322
EcoT38I	GRGCYC	2 cut(s)	321, 1079
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	3 cut(s)	200, 848, 1186
FaiI	YATR	8 cut(s)	198, 436, 702, 810, 822, 846, 945, 1184
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	3 cut(s)	196, 844, 1182
FokI	GGATG	5 cut(s)	89, 161, 372, 527, 758
FriOI	GRGCYC	2 cut(s)	321, 1079
FspBI	CTAG	3 cut(s)	269, 290, 548
GlaI	GCGC	1 cut(s)	67
GsaI	CCCAGC	3 cut(s)	99, 309, 747
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	2 cut(s)	26, 569
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	200, 848, 1186
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	2 cut(s)	190, 970
HindII	GTYRAC	2 cut(s)	190, 970
HindIII	AAGCTT	2 cut(s)	559, 1171
HinfI	GANTC	2 cut(s)	532, 916
HpaII	CCGG	2 cut(s)	26, 569
HphI	GGTGA	2 cut(s)	1103, 1162
Hpy166II	GTNNAC	3 cut(s)	190, 932, 970
Hpy188I	TCNGA	9 cut(s)	103, 179, 448, 496, 537, 616, 865, 915, 1112
Hpy188III	TCNNGA	5 cut(s)	158, 671, 845, 900, 920
Hpy8I	GTNNAC	3 cut(s)	190, 932, 970
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	5 cut(s)	403, 419, 785, 950, 1106
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	853
HpyCH4V	TGCA	6 cut(s)	260, 565, 593, 652, 1061, 1107
HpyF3I	CTNAG	3 cut(s)	72, 495, 869
HpySE526I	ACGT	1 cut(s)	853
Hsp92II	CATG	3 cut(s)	200, 848, 1186
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	103, 616, 639, 1030
LmnI	GCTCC	4 cut(s)	28, 324, 428, 1025
Lsp1109I	GCAGC	7 cut(s)	240, 246, 443, 493, 573, 577, 996
LweI	GCATC	4 cut(s)	508, 757, 780, 1116
MabI	ACCWGGT	1 cut(s)	6
MaeI	CTAG	3 cut(s)	269, 290, 548
MaeII	ACGT	1 cut(s)	853
MaeIII	GTNAC	1 cut(s)	1091
MalI	GATC	4 cut(s)	105, 618, 641, 1032
MboI	GATC	4 cut(s)	103, 616, 639, 1030
MboII	GAAGA	3 cut(s)	435, 899, 1028
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	321, 1079
MluCI	AATT	7 cut(s)	261, 401, 626, 653, 674, 811, 1159
MmeI	TCCRAC	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	1035
MslI	CAYNNNNRTG	1 cut(s)	753
MspA1I	CMGCKG	2 cut(s)	225, 231
MspI	CCGG	2 cut(s)	26, 569
MspR9I	CCNGG	5 cut(s)	8, 33, 210, 570, 786
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	3 cut(s)	137, 204, 654
MvaI	CCWGG	4 cut(s)	8, 33, 210, 786
MvnI	CGCG	1 cut(s)	68
NciI	CCSGG	1 cut(s)	570
NdeII	GATC	4 cut(s)	103, 616, 639, 1030
NlaIII	CATG	3 cut(s)	200, 848, 1186
NlaIV	GGNNCC	4 cut(s)	30, 320, 924, 1027
NmuCI	GTSAC	1 cut(s)	1091
PagI	TCATGA	1 cut(s)	844
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PctI	GAATGC	3 cut(s)	137, 204, 654
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	532, 916
PflMI	CCANNNNNTGG	1 cut(s)	391
Psp1406I	AACGTT	1 cut(s)	853
Psp6I	CCWGG	4 cut(s)	6, 31, 208, 784
PspEI	GGTNACC	1 cut(s)	1091
PspFI	CCCAGC	3 cut(s)	95, 305, 743
PspGI	CCWGG	4 cut(s)	6, 31, 208, 784
PspN4I	GGNNCC	4 cut(s)	30, 320, 924, 1027
PspPI	GGNCC	5 cut(s)	4, 115, 308, 544, 788
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	2 cut(s)	608, 687
RsaNI	GTAC	2 cut(s)	607, 686
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	1 cut(s)	1035
Sau3AI	GATC	4 cut(s)	103, 616, 639, 1030
Sau96I	GGNCC	5 cut(s)	4, 115, 308, 544, 788
ScrFI	CCNGG	5 cut(s)	8, 33, 210, 570, 786
SduI	GDGCHC	2 cut(s)	321, 1079
SexAI	ACCWGGT	1 cut(s)	6
SfaNI	GCATC	4 cut(s)	508, 757, 780, 1116
SfcI	CTRYAG	1 cut(s)	943
SinI	GGWCC	4 cut(s)	4, 115, 544, 788
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	988, 1080
SmoI	CTYRAG	2 cut(s)	988, 1080
Sse9I	AATT	7 cut(s)	261, 401, 626, 653, 674, 811, 1159
SsiI	CCGC	4 cut(s)	225, 231, 797, 1003
SspI	AATATT	2 cut(s)	1123, 1138
SspMI	CTAG	3 cut(s)	269, 290, 548
StyD4I	CCNGG	5 cut(s)	6, 31, 208, 568, 784
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	856
TasI	AATT	7 cut(s)	261, 401, 626, 653, 674, 811, 1159
TauI	GCSGC	3 cut(s)	228, 234, 1006
TfiI	GAWTC	2 cut(s)	532, 916
Tru1I	TTAA	1 cut(s)	1035
Tru9I	TTAA	1 cut(s)	1035
TseFI	GTSAC	1 cut(s)	1091
TseI	GCWGC	7 cut(s)	228, 234, 431, 481, 565, 586, 984
Tsp45I	GTSAC	1 cut(s)	1091
TspDTI	ATGAA	3 cut(s)	352, 1045, 1130
TspGWI	ACGGA	1 cut(s)	703
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	4 cut(s)	4, 115, 544, 788
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	3 cut(s)	269, 290, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.