Prupe.5G058900_v2.0.a1

Retinoblastoma-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
6360250 .. 6365287
5038 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G058900.2

Sequence Viewer

Length: 1539 bp
ATGAACGCTTCGATAATCGACCCATTGCAAGGAGATTTCCCAGAAGTGATAGAGGAGTATTTGGAACATGGGGTTATGAAATGCATCGCCTTTAATCGCCGTGGTACCCTTCTTGCTGCTGGGTGCTCTGATGGAAATTGCGTCATATGGGATTTTGAGACCAGGGGTATTGCGAAGGAGCTTCGTGATAAAGACTGTGTTGCTGCCATAACTAGTGTATGTTGGTCAAAGTATGGCCATCGCATTCTCGTGTCTGCTGCTGACAAGTCGTTGACACTATGGGATGTTGTCAGTGGTGAGAAAATCACTCGAACGATACTCCAACAAACCCCTCTACAAGCTCGGCTACATCCTGGTTCCTCTACTCCATCTCTCTGCTTGGCATGCCCCCTCTCATCTGCTCCCATCATTGTTGACTTGAATGCAGGAAGCACAACTGTTCTTCCAGTTTCCATTCCTGACGTTAACCCAGGACTTGCCCCTTCGTCACGGAACAAAATTTCTGATGGCACTCCTTTTTCTCCTACTGCCGCTTGCTTTAATAAGTATGGGGATCTGGTTTATGCGGGGAACTCGAAAGGTGAAATACTTTTAATAGATTACAAAAGTGTCCAAGTGCGTGCCATGGTTCCTGTTTCTGGAGGTTCTGTGATTAAGAACATAGTGTTCAGCAGGAATGGACAGTATCTGCTTACAAATTCAAATGATAGAACAATCAGGATCTATGAGAACCTTCTCCCCTCGAAAGATGGACTTAAAGCCCTAGGTGACCTAAATGTGACCCATGATGGGATTGATGATAGTGTTGAGAAGTTGAAAGCAGTTGGATCGAAATGCTTAACCCTTTTCCGTGAGTTTCAAGATGCCATCACAAAGATGCATTGGAAAGCACCTTGTTTCAGTGGTGATGGTGAGTGGGTGATTGGCGGTTCTGCAAGCAAAGGAGAACACAAGATTTACATATGGGATAGGGCCGGGCATCTTGTGAAAATTCTGGAAGGGCCAAAGGAAGCCTTGATAGATTTAGTATGGCATCCTGTTCACCCCATTGTTGTCTCTGTTTCACTGACTGGTTTGGTTTATATCTGGGCCAAAGATTACACTGAGAACTGGAGTGCATTTGCTCCTGATTTCAAAGAGCTTGAGGAAAATGAGGAATATGTAGAACGAGAAGATGAATTTGATCTGATCCCTGAAACTGAAAAGGTGAAAGAATCTGATGTTAATGAAGATGATGAAGTTGATATTGTGACAGTGGAGAAGGATTCAGCTTTCAGTGATTCAGATATGTCACAGGAGGAGCTATGCTTTTTACCTGCAATTCCTTATCCTGATGTTCCTGAGCAGCAAGATAAGTGCATAGAAAGTTCATCGAAGTTGGTGGATAGCAATAATTCTGGCTCCCCTATTTCAGAAGAGGGCCGACCAAATGGACGTGCAAATAATCATGCATTAAGTCCACTTGAAGAGGATGCTGGTGCGACACGGTTGAAAAGAAAACGGAAGCCTTCTGAGAAGGGGATGGAGTTTCAGGCTTAG

Protein Analysis

513

Amino Acids

56.28

Weight (kDa)

4.88

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1324
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 104
AciI CCGC 3 cut(s) 531, 566, 927
AclWI GGATC 4 cut(s) 561, 728, 835, 1183
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 4 cut(s) 498, 697, 990, 1178
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 3 cut(s) 29, 638, 789
AgsI TTSAA 7 cut(s) 421, 702, 817, 860, 1135, 1466, 1492
AhlI ACTAGT 1 cut(s) 212
AjiI CACGTC 1 cut(s) 1436
AjnI CCWGG 3 cut(s) 161, 352, 469
AluBI AGCT 5 cut(s) 181, 341, 1141, 1271, 1303
AluI AGCT 5 cut(s) 181, 341, 1141, 1271, 1303
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 2 cut(s) 152, 1060
AlwI GGATC 4 cut(s) 561, 728, 835, 1183
AlwNI CAGNNNCTG 1 cut(s) 688
AoxI GGCC 5 cut(s) 235, 972, 1001, 1089, 1420
ApeKI GCWGC 4 cut(s) 116, 203, 257, 1345
ApoI RAATTY 4 cut(s) 498, 697, 990, 1178
Asp718I GGTACC 1 cut(s) 104
AspA2I CCTAGG 1 cut(s) 763
AspS9I GGNCC 4 cut(s) 972, 1001, 1089, 1420
AsuC2I CCSGG 1 cut(s) 976
AsuHPI GGTGA 8 cut(s) 308, 593, 779, 917, 923, 931, 1034, 1219
AvrII CCTAGG 1 cut(s) 763
BalI TGGCCA 1 cut(s) 237
BanI GGYRCC 1 cut(s) 104
BauI CACGAG 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 4 cut(s) 103, 190, 244, 1357
BceAI ACGGC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 810, 844
BciT130I CCWGG 3 cut(s) 163, 354, 471
BcnI CCSGG 1 cut(s) 976
BcoDI GTCTC 2 cut(s) 152, 1060
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 2 cut(s) 213, 764
BfuAI ACCTGC 1 cut(s) 1324
BisI GCNGC 5 cut(s) 117, 204, 258, 531, 1346
BlnI CCTAGG 1 cut(s) 763
BlsI GCNGC 5 cut(s) 118, 205, 259, 532, 1347
Bme1390I CCNGG 4 cut(s) 163, 354, 471, 976
BmgBI CACGTC 1 cut(s) 1436
BmgT120I GGNCC 4 cut(s) 972, 1001, 1089, 1420
BmiI GGNNCC 4 cut(s) 106, 358, 630, 1402
BmrFI CCNGG 4 cut(s) 163, 354, 471, 976
BmsI GCATC 6 cut(s) 93, 853, 867, 988, 1042, 1462
BpmI CTGGAG 2 cut(s) 660, 1132
Bpu10I CCTNAGC 1 cut(s) 1341
BpuEI CTTGAG 1 cut(s) 1163
BpuMI CCSGG 1 cut(s) 976
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 5 cut(s) 100, 162, 469, 624, 763
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 638, 789
Bse1I ACTGG 3 cut(s) 446, 1075, 1115
Bse3DI GCAATG 1 cut(s) 23
BseBI CCWGG 3 cut(s) 163, 354, 471
BseDI CCNNGG 5 cut(s) 100, 162, 469, 624, 763
BseGI GGATG 5 cut(s) 289, 349, 1033, 1477, 1527
BseLI CCNNNNNNNGG 3 cut(s) 29, 638, 789
BseMI GCAATG 1 cut(s) 23
BseMII CTCAG 3 cut(s) 1095, 1332, 1503
BseNI ACTGG 3 cut(s) 446, 1075, 1115
BseRI GAGGAG 2 cut(s) 68, 1313
BseXI GCAGC 4 cut(s) 103, 190, 244, 1357
BseYI CCCAGC 1 cut(s) 119
BshFI GGCC 5 cut(s) 237, 974, 1003, 1091, 1422
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 975
BslI CCNNNNNNNGG 3 cut(s) 29, 638, 789
BsmAI GTCTC 2 cut(s) 152, 1060
BsmI GAATGC 2 cut(s) 243, 427
BsnI GGCC 5 cut(s) 237, 974, 1003, 1091, 1422
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 5 cut(s) 553, 720, 827, 1183, 1188
Bsp19I CCATGG 1 cut(s) 624
BspACI CCGC 3 cut(s) 531, 566, 927
BspANI GGCC 5 cut(s) 237, 974, 1003, 1091, 1422
BspCNI CTCAG 3 cut(s) 1096, 1333, 1504
BspLI GGNNCC 4 cut(s) 106, 358, 630, 1402
BspMI ACCTGC 1 cut(s) 1324
BspPI GGATC 4 cut(s) 561, 728, 835, 1183
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 23
BsrI ACTGG 3 cut(s) 446, 1075, 1115
BssECI CCNNGG 5 cut(s) 100, 162, 469, 624, 763
BssMI GATC 5 cut(s) 553, 720, 827, 1183, 1188
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 2 cut(s) 624, 763
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 3 cut(s) 163, 354, 471
Bst4CI ACNGT 5 cut(s) 197, 439, 684, 1255, 1488
Bst6I CTCTTC 2 cut(s) 1410, 1461
BstC8I GCNNGC 4 cut(s) 385, 535, 621, 937
BstDEI CTNAG 4 cut(s) 1104, 1341, 1512, 1536
BstDSI CCRYGG 2 cut(s) 100, 624
BstEII GGTNACC 1 cut(s) 767
BstF5I GGATG 5 cut(s) 289, 349, 1033, 1477, 1527
BstKTI GATC 5 cut(s) 556, 723, 830, 1186, 1191
BstMAI GTCTC 2 cut(s) 152, 1060
BstMBI GATC 5 cut(s) 553, 720, 827, 1183, 1188
BstMWI GCNNNNNNNGC 1 cut(s) 384
BstNI CCWGG 3 cut(s) 163, 354, 471
BstNSI RCATGY 1 cut(s) 387
BstPI GGTNACC 1 cut(s) 767
BstSCI CCNGG 4 cut(s) 161, 352, 469, 974
BstV1I GCAGC 4 cut(s) 103, 190, 244, 1357
BstX2I RGATCY 2 cut(s) 553, 720
BstYI RGATCY 2 cut(s) 553, 720
BsuRI GGCC 5 cut(s) 237, 974, 1003, 1091, 1422
BtgI CCRYGG 2 cut(s) 100, 624
BtgZI GCGATG 2 cut(s) 70, 224
BtrI CACGTC 1 cut(s) 1436
BtsCI GGATG 5 cut(s) 289, 349, 1033, 1477, 1527
BtsIMutI CAGTG 6 cut(s) 298, 907, 1064, 1101, 1260, 1282
BveI ACCTGC 1 cut(s) 1324
Cac8I GCNNGC 4 cut(s) 385, 535, 621, 937
CaiI CAGNNNCTG 1 cut(s) 688
Cfr13I GGNCC 4 cut(s) 972, 1001, 1089, 1420
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 105
CviAII CATG 5 cut(s) 68, 384, 625, 785, 1448
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 4 cut(s) 1104, 1341, 1512, 1536
DpnI GATC 5 cut(s) 555, 722, 829, 1185, 1190
DpnII GATC 5 cut(s) 553, 720, 827, 1183, 1188
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 1410, 1461
EarI CTCTTC 2 cut(s) 1410, 1461
Eco130I CCWWGG 2 cut(s) 624, 763
Eco31I GGTCTC 1 cut(s) 152
Eco91I GGTNACC 1 cut(s) 767
EcoO65I GGTNACC 1 cut(s) 767
EcoRII CCWGG 3 cut(s) 161, 352, 469
EcoT14I CCWWGG 2 cut(s) 624, 763
EcoT22I ATGCAT 3 cut(s) 86, 882, 1453
ErhI CCWWGG 2 cut(s) 624, 763
FaeI CATG 5 cut(s) 71, 387, 628, 788, 1451
FalI AAGNNNNNCTT 4 cut(s) 738, 770, 998, 1030
FatI CATG 5 cut(s) 67, 383, 624, 784, 1447
FauI CCCGC 1 cut(s) 559
FauNDI CATATG 2 cut(s) 146, 962
Fnu4HI GCNGC 5 cut(s) 117, 204, 258, 531, 1346
FokI GGATG 5 cut(s) 296, 336, 1020, 1484, 1534
Fsp4HI GCNGC 5 cut(s) 117, 204, 258, 531, 1346
FspBI CTAG 2 cut(s) 213, 764
GluI GCNGC 5 cut(s) 117, 204, 258, 531, 1346
GsaI CCCAGC 1 cut(s) 123
GsuI CTGGAG 2 cut(s) 660, 1132
HaeIII GGCC 5 cut(s) 237, 974, 1003, 1091, 1422
HapII CCGG 1 cut(s) 975
HgaI GACGC 1 cut(s) 130
Hin1II CATG 5 cut(s) 71, 387, 628, 788, 1451
HincII GTYRAC 3 cut(s) 273, 415, 466
HindII GTYRAC 3 cut(s) 273, 415, 466
HinfI GANTC 3 cut(s) 1214, 1265, 1280
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 1 cut(s) 975
HphI GGTGA 8 cut(s) 308, 593, 779, 917, 923, 931, 1034, 1219
Hpy166II GTNNAC 5 cut(s) 273, 415, 466, 1042, 1460
Hpy188I TCNGA 7 cut(s) 130, 505, 1188, 1219, 1285, 1414, 1513
Hpy188III TCNNGA 9 cut(s) 185, 458, 639, 718, 860, 995, 1127, 1331, 1340
Hpy8I GTNNAC 5 cut(s) 273, 415, 466, 1042, 1460
HpyAV CCTTC 8 cut(s) 119, 169, 492, 743, 992, 1255, 1510, 1518
HpyCH4III ACNGT 5 cut(s) 197, 439, 684, 1255, 1488
HpyCH4IV ACGT 2 cut(s) 462, 1435
HpyF10VI GCNNNNNNNGC 1 cut(s) 384
HpyF3I CTNAG 4 cut(s) 1104, 1341, 1512, 1536
HpySE526I ACGT 2 cut(s) 462, 1435
Hsp92II CATG 5 cut(s) 71, 387, 628, 788, 1451
KpnI GGTACC 1 cut(s) 108
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 5 cut(s) 553, 720, 827, 1183, 1188
LmnI GCTCC 5 cut(s) 178, 406, 1129, 1300, 1406
Lsp1109I GCAGC 4 cut(s) 103, 190, 244, 1357
LweI GCATC 6 cut(s) 93, 853, 867, 988, 1042, 1462
MaeI CTAG 2 cut(s) 213, 764
MaeII ACGT 2 cut(s) 462, 1435
MaeIII GTNAC 5 cut(s) 486, 767, 778, 1249, 1290
MalI GATC 5 cut(s) 555, 722, 829, 1185, 1190
MboI GATC 5 cut(s) 553, 720, 827, 1183, 1188
MboII GAAGA 5 cut(s) 434, 1184, 1241, 1427, 1478
MflI RGATCY 2 cut(s) 553, 720
MhlI GDGCHC 1 cut(s) 128
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 7 cut(s) 136, 498, 697, 990, 1178, 1320, 1393
MluNI TGGCCA 1 cut(s) 237
MmeI TCCRAC 2 cut(s) 346, 805
Mox20I TGGCCA 1 cut(s) 237
Mph1103I ATGCAT 3 cut(s) 86, 882, 1453
MscI TGGCCA 1 cut(s) 237
MseI TTAA 9 cut(s) 93, 465, 540, 593, 654, 756, 839, 1224, 1454
MslI CAYNNNNRTG 2 cut(s) 248, 875
Msp20I TGGCCA 1 cut(s) 237
MspI CCGG 1 cut(s) 975
MspR9I CCNGG 4 cut(s) 163, 354, 471, 976
Mva1269I GAATGC 2 cut(s) 243, 427
MvaI CCWGG 3 cut(s) 163, 354, 471
MwoI GCNNNNNNNGC 1 cut(s) 384
NciI CCSGG 1 cut(s) 976
NcoI CCATGG 1 cut(s) 624
NdeI CATATG 2 cut(s) 146, 962
NdeII GATC 5 cut(s) 553, 720, 827, 1183, 1188
NlaIII CATG 5 cut(s) 71, 387, 628, 788, 1451
NlaIV GGNNCC 4 cut(s) 106, 358, 630, 1402
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 5 cut(s) 486, 767, 778, 1249, 1290
NsiI ATGCAT 3 cut(s) 86, 882, 1453
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PctI GAATGC 2 cut(s) 243, 427
PfeI GAWTC 3 cut(s) 1214, 1265, 1280
PkrI GCNGC 5 cut(s) 118, 205, 259, 532, 1347
Psp6I CCWGG 3 cut(s) 161, 352, 469
PspEI GGTNACC 1 cut(s) 767
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 3 cut(s) 161, 352, 469
PspN4I GGNNCC 4 cut(s) 106, 358, 630, 1402
PspPI GGNCC 4 cut(s) 972, 1001, 1089, 1420
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 2 cut(s) 553, 720
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 2 cut(s) 248, 875
SaqAI TTAA 9 cut(s) 93, 465, 540, 593, 654, 756, 839, 1224, 1454
SatI GCNGC 5 cut(s) 117, 204, 258, 531, 1346
Sau3AI GATC 5 cut(s) 553, 720, 827, 1183, 1188
Sau96I GGNCC 4 cut(s) 972, 1001, 1089, 1420
ScrFI CCNGG 4 cut(s) 163, 354, 471, 976
SduI GDGCHC 1 cut(s) 128
SfaNI GCATC 6 cut(s) 93, 853, 867, 988, 1042, 1462
SmiMI CAYNNNNRTG 2 cut(s) 248, 875
SmlI CTYRAG 1 cut(s) 1142
SmoI CTYRAG 1 cut(s) 1142
SpeI ACTAGT 1 cut(s) 212
SphI GCATGC 1 cut(s) 387
Sse9I AATT 7 cut(s) 136, 498, 697, 990, 1178, 1320, 1393
SsiI CCGC 3 cut(s) 531, 566, 927
SspMI CTAG 2 cut(s) 213, 764
StyD4I CCNGG 4 cut(s) 161, 352, 469, 974
StyI CCWWGG 2 cut(s) 624, 763
TaaI ACNGT 5 cut(s) 197, 439, 684, 1255, 1488
TaiI ACGT 2 cut(s) 465, 1438
TaqI TCGA 7 cut(s) 11, 18, 310, 575, 743, 830, 1373
TasI AATT 7 cut(s) 136, 498, 697, 990, 1178, 1320, 1393
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 3 cut(s) 1214, 1265, 1280
Tru1I TTAA 9 cut(s) 93, 465, 540, 593, 654, 756, 839, 1224, 1454
Tru9I TTAA 9 cut(s) 93, 465, 540, 593, 654, 756, 839, 1224, 1454
TscAI CASTG 6 cut(s) 298, 907, 1071, 1108, 1260, 1282
TseFI GTSAC 5 cut(s) 486, 767, 778, 1249, 1290
TseI GCWGC 4 cut(s) 116, 203, 257, 1345
Tsp45I GTSAC 5 cut(s) 486, 767, 778, 1249, 1290
TspDTI ATGAA 6 cut(s) 17, 92, 1191, 1242, 1251, 1359
TspGWI ACGGA 3 cut(s) 505, 839, 1516
TspRI CASTG 6 cut(s) 298, 907, 1071, 1108, 1260, 1282
XapI RAATTY 4 cut(s) 498, 697, 990, 1178
XceI RCATGY 1 cut(s) 387
XmaJI CCTAGG 1 cut(s) 763
XspI CTAG 2 cut(s) 213, 764
Zsp2I ATGCAT 3 cut(s) 86, 882, 1453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.