Rmu_sc0004529.1_g000038

Retinoblastoma-binding protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004529.1
Physical Location & Seq
Reverse (-)
173975 .. 176071
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004529.1_g000038.1.cds

Sequence Viewer

Length: 1158 bp
atgtgtggggtgcatcatgagctgattaagaggcactatgtcctggaggttcatcaatctgctggctgctctgatggtaattgcataatatgggattttgagaccaggggcattgctaaggagcttcgtgataaagactgtgttgctgccataactagtgtatgttggtcaaaatatggtcatcgcgttcttgtgtctgcagctgacaaatcgttgacactatgggatgttgtcagtggtgagaagataacaagaacgatactgcaacaaacccctctacaagctcggttacatcctggttcctctactccatctctctgcctggcttgccctctctcatctgctcccatgattgttgacttgaatacaggaagtgcaactatgcttccagtttccattccggactctaacccaaaggttcctgcccatgaaacaaagaagagaaaaggtacagcaaagaaagccatacaaaaacaaaactgcaggagttttctagcaatgttgtggggacgcggaaagcagaataccaccataaaattggaaagcaatgctcctcaccgagagcagcagccgacaaagtcaccattagctttattgtgcttcataatttcacatggccaccatcgggcaaaggaaaagttcttctgcgcgcgtgatctagcattttttgttgtctctgtttccttgacgggcttggtttatatttgggctaaagattacactgagaactggagtgcatttgctcctgattttaaggagctcgaggaaaatgaggagtacatagaacgagaagatgaatttgatctgatacctgaaactgaaaaggccaaagaatctaatgttaatgaagatgatgaagttgatatcgtgacagtggacaaggattcagctttcagtgattcagatatgtcacaggaagagctatgcttcttgcccgcaattcctttgcctgatgctccggagcaacaagacaagtgcttagaaagttcatcaaagttggtggaaagtaataattctggatcccctctttcagaagagggcagaccaaatggacgtgcaatgaatcatgcatcaagtccgcttgaagaggaccctggagcaacacgcttgaaaagaaaacggaagccttccgaaaagtggttggacttgcagctttag

Protein Analysis

385

Amino Acids

42.99

Weight (kDa)

5.71

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 186, 513, 650, 652
AccIII TCCGGA 2 cut(s) 400, 958
AciI CCGC 3 cut(s) 513, 936, 1079
AclWI GGATC 2 cut(s) 1014, 1027
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 1 cut(s) 797
AfaI GTAC 2 cut(s) 451, 779
AfiI CCNNNNNNNGG 2 cut(s) 625, 1137
AgsI TTSAA 3 cut(s) 364, 1085, 1111
AhlI ACTAGT 1 cut(s) 155
AjiI CACGTC 1 cut(s) 1055
AjnI CCWGG 5 cut(s) 42, 104, 295, 321, 1093
AluBI AGCT 9 cut(s) 22, 124, 203, 284, 590, 760, 890, 922, 1153
AluI AGCT 9 cut(s) 22, 124, 203, 284, 590, 760, 890, 922, 1153
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 2 cut(s) 95, 679
AlwI GGATC 2 cut(s) 1014, 1027
Ama87I CYCGRG 1 cut(s) 761
Aor13HI TCCGGA 2 cut(s) 400, 958
AoxI GGCC 2 cut(s) 616, 825
ApeKI GCWGC 6 cut(s) 66, 146, 200, 565, 568, 1150
ApoI RAATTY 1 cut(s) 797
AspLEI GCGC 2 cut(s) 650, 652
AspS9I GGNCC 1 cut(s) 1090
AsuHPI GGTGA 3 cut(s) 251, 548, 573
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 1 cut(s) 1090
BalI TGGCCA 1 cut(s) 618
BamHI GGATCC 1 cut(s) 1019
BanII GRGCYC 1 cut(s) 762
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 5 cut(s) 53, 133, 212, 577, 580
BccI CCATC 3 cut(s) 68, 319, 630
BciT130I CCWGG 5 cut(s) 44, 106, 297, 323, 1095
BcoDI GTCTC 2 cut(s) 95, 679
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 3 cut(s) 156, 494, 659
BfmI CTRYAG 2 cut(s) 198, 481
BisI GCNGC 6 cut(s) 67, 147, 201, 566, 569, 1151
BlsI GCNGC 6 cut(s) 68, 148, 202, 567, 570, 1152
Bme1390I CCNGG 5 cut(s) 44, 106, 297, 323, 1095
Bme18I GGWCC 1 cut(s) 1090
BmeT110I CYCGRG 1 cut(s) 761
BmgBI CACGTC 1 cut(s) 1055
BmgT120I GGNCC 1 cut(s) 1090
BmiI GGNNCC 4 cut(s) 301, 420, 1021, 1092
BmrFI CCNGG 5 cut(s) 44, 106, 297, 323, 1095
BmsI GCATC 3 cut(s) 22, 943, 1079
BpmI CTGGAG 3 cut(s) 65, 751, 1116
Bpu10I CCTNAGC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 105, 1093
BsaWI WCCGGW 2 cut(s) 400, 958
Bsc4I CCNNNNNNNGG 2 cut(s) 625, 1137
Bse1I ACTGG 2 cut(s) 389, 734
Bse3DI GCAATG 4 cut(s) 111, 504, 553, 1065
BseAI TCCGGA 2 cut(s) 400, 958
BseBI CCWGG 5 cut(s) 44, 106, 297, 323, 1095
BseDI CCNNGG 2 cut(s) 105, 1093
BseGI GGATG 2 cut(s) 232, 292
BseLI CCNNNNNNNGG 2 cut(s) 625, 1137
BseMI GCAATG 4 cut(s) 111, 504, 553, 1065
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 2 cut(s) 389, 734
BsePI GCGCGC 1 cut(s) 648
BseRI GAGGAG 2 cut(s) 543, 788
BseXI GCAGC 5 cut(s) 53, 133, 212, 577, 580
Bsh1236I CGCG 4 cut(s) 186, 513, 650, 652
BshFI GGCC 2 cut(s) 618, 827
BsiHKAI GWGCWC 1 cut(s) 762
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 2 cut(s) 401, 959
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 2 cut(s) 625, 1137
BsmAI GTCTC 2 cut(s) 95, 679
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 2 cut(s) 618, 827
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 761
Bsp1286I GDGCHC 1 cut(s) 762
Bsp13I TCCGGA 2 cut(s) 400, 958
Bsp143I GATC 3 cut(s) 655, 802, 1019
BspACI CCGC 3 cut(s) 513, 936, 1079
BspANI GGCC 2 cut(s) 618, 827
BspCNI CTCAG 1 cut(s) 715
BspEI TCCGGA 2 cut(s) 400, 958
BspFNI CGCG 4 cut(s) 186, 513, 650, 652
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 4 cut(s) 301, 420, 1021, 1092
BspMAI CTGCAG 2 cut(s) 202, 485
BspPI GGATC 2 cut(s) 1014, 1027
BspQI GCTCTTC 1 cut(s) 912
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 4 cut(s) 111, 504, 553, 1065
BsrI ACTGG 2 cut(s) 389, 734
BssECI CCNNGG 2 cut(s) 105, 1093
BssHII GCGCGC 1 cut(s) 648
BssMI GATC 3 cut(s) 655, 802, 1019
Bst2UI CCWGG 5 cut(s) 44, 106, 297, 323, 1095
Bst4CI ACNGT 2 cut(s) 140, 874
Bst6I CTCTTC 4 cut(s) 434, 912, 1029, 1080
BstC8I GCNNGC 4 cut(s) 64, 328, 650, 936
BstDEI CTNAG 3 cut(s) 117, 723, 979
BstF5I GGATG 2 cut(s) 232, 292
BstFNI CGCG 4 cut(s) 186, 513, 650, 652
BstHHI GCGC 2 cut(s) 650, 652
BstKTI GATC 3 cut(s) 658, 805, 1022
BstMAI GTCTC 2 cut(s) 95, 679
BstMBI GATC 3 cut(s) 655, 802, 1019
BstMWI GCNNNNNNNGC 3 cut(s) 19, 327, 461
BstNI CCWGG 5 cut(s) 44, 106, 297, 323, 1095
BstSCI CCNGG 5 cut(s) 42, 104, 295, 321, 1093
BstSFI CTRYAG 2 cut(s) 198, 481
BstUI CGCG 4 cut(s) 186, 513, 650, 652
BstV1I GCAGC 5 cut(s) 53, 133, 212, 577, 580
BstX2I RGATCY 1 cut(s) 1019
BstXI CCANNNNNNTGG 1 cut(s) 538
BstYI RGATCY 1 cut(s) 1019
BsuRI GGCC 2 cut(s) 618, 827
BtgZI GCGATG 1 cut(s) 167
BtrI CACGTC 1 cut(s) 1055
BtsCI GGATG 2 cut(s) 232, 292
BtsIMutI CAGTG 4 cut(s) 241, 720, 879, 901
Cac8I GCNNGC 4 cut(s) 64, 328, 650, 936
CciI TCATGA 1 cut(s) 16
CfoI GCGC 2 cut(s) 650, 652
Cfr13I GGNCC 1 cut(s) 1090
CseI GACGC 1 cut(s) 519
Csp6I GTAC 2 cut(s) 450, 778
CspCI CAANNNNNGTGG 2 cut(s) 981, 1016
CviAII CATG 5 cut(s) 17, 349, 428, 614, 1067
CviQI GTAC 2 cut(s) 450, 778
DdeI CTNAG 3 cut(s) 117, 723, 979
DpnI GATC 3 cut(s) 657, 804, 1021
DpnII GATC 3 cut(s) 655, 802, 1019
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 4 cut(s) 434, 912, 1029, 1080
EarI CTCTTC 4 cut(s) 434, 912, 1029, 1080
Ecl136II GAGCTC 1 cut(s) 760
Eco24I GRGCYC 1 cut(s) 762
Eco31I GGTCTC 1 cut(s) 95
Eco32I GATATC 1 cut(s) 865
Eco47I GGWCC 1 cut(s) 1090
Eco53kI GAGCTC 1 cut(s) 760
Eco88I CYCGRG 1 cut(s) 761
EcoICRI GAGCTC 1 cut(s) 760
EcoO109I RGGNCCY 1 cut(s) 1090
EcoRII CCWGG 5 cut(s) 42, 104, 295, 321, 1093
EcoRV GATATC 1 cut(s) 865
EcoT22I ATGCAT 1 cut(s) 1072
EcoT38I GRGCYC 1 cut(s) 762
FaeI CATG 5 cut(s) 20, 352, 431, 617, 1070
FaqI GGGAC 1 cut(s) 522
FatI CATG 5 cut(s) 16, 348, 427, 613, 1066
FauI CCCGC 1 cut(s) 943
Fnu4HI GCNGC 6 cut(s) 67, 147, 201, 566, 569, 1151
FokI GGATG 2 cut(s) 239, 279
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 6 cut(s) 67, 147, 201, 566, 569, 1151
FspBI CTAG 3 cut(s) 156, 494, 659
GlaI GCGC 2 cut(s) 649, 651
GluI GCNGC 6 cut(s) 67, 147, 201, 566, 569, 1151
GsuI CTGGAG 3 cut(s) 65, 751, 1116
HaeIII GGCC 2 cut(s) 618, 827
HapII CCGG 2 cut(s) 401, 959
HgaI GACGC 1 cut(s) 519
HhaI GCGC 2 cut(s) 650, 652
Hin1II CATG 5 cut(s) 20, 352, 431, 617, 1070
Hin6I GCGC 2 cut(s) 648, 650
HinP1I GCGC 2 cut(s) 648, 650
HincII GTYRAC 2 cut(s) 216, 358
HindII GTYRAC 2 cut(s) 216, 358
HinfI GANTC 5 cut(s) 404, 833, 884, 899, 1063
HpaII CCGG 2 cut(s) 401, 959
HphI GGTGA 3 cut(s) 251, 548, 573
Hpy166II GTNNAC 3 cut(s) 216, 358, 877
Hpy188I TCNGA 5 cut(s) 73, 807, 904, 1033, 1132
Hpy188III TCNNGA 7 cut(s) 17, 128, 401, 746, 868, 959, 1017
Hpy8I GTNNAC 3 cut(s) 216, 358, 877
HpyAV CCTTC 1 cut(s) 1137
HpyCH4III ACNGT 2 cut(s) 140, 874
HpyCH4IV ACGT 1 cut(s) 1054
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 327, 461
HpyF3I CTNAG 3 cut(s) 117, 723, 979
HpySE526I ACGT 1 cut(s) 1054
Hsp92II CATG 5 cut(s) 20, 352, 431, 617, 1070
HspAI GCGC 2 cut(s) 648, 650
Kpn2I TCCGGA 2 cut(s) 400, 958
Kzo9I GATC 3 cut(s) 655, 802, 1019
LguI GCTCTTC 1 cut(s) 912
LmnI GCTCC 8 cut(s) 121, 349, 556, 748, 757, 961, 961, 1097
Lsp1109I GCAGC 5 cut(s) 53, 133, 212, 577, 580
LweI GCATC 3 cut(s) 22, 943, 1079
MaeI CTAG 3 cut(s) 156, 494, 659
MaeII ACGT 1 cut(s) 1054
MaeIII GTNAC 4 cut(s) 288, 579, 868, 909
MalI GATC 3 cut(s) 657, 804, 1021
MboI GATC 3 cut(s) 655, 802, 1019
MboII GAAGA 8 cut(s) 256, 451, 634, 803, 860, 929, 1046, 1097
MflI RGATCY 1 cut(s) 1019
MhlI GDGCHC 1 cut(s) 762
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 6 cut(s) 79, 536, 606, 797, 939, 1012
MluNI TGGCCA 1 cut(s) 618
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 1122
Mox20I TGGCCA 1 cut(s) 618
Mph1103I ATGCAT 1 cut(s) 1072
MroI TCCGGA 2 cut(s) 400, 958
MscI TGGCCA 1 cut(s) 618
MseI TTAA 3 cut(s) 27, 753, 843
Msp20I TGGCCA 1 cut(s) 618
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 2 cut(s) 401, 959
MspR9I CCNGG 5 cut(s) 44, 106, 297, 323, 1095
MvaI CCWGG 5 cut(s) 44, 106, 297, 323, 1095
MvnI CGCG 4 cut(s) 186, 513, 650, 652
MwoI GCNNNNNNNGC 3 cut(s) 19, 327, 461
NdeII GATC 3 cut(s) 655, 802, 1019
NlaIII CATG 5 cut(s) 20, 352, 431, 617, 1070
NlaIV GGNNCC 4 cut(s) 301, 420, 1021, 1092
NmuCI GTSAC 3 cut(s) 579, 868, 909
NsiI ATGCAT 1 cut(s) 1072
PaeR7I CTCGAG 1 cut(s) 761
PagI TCATGA 1 cut(s) 16
PauI GCGCGC 1 cut(s) 648
PciSI GCTCTTC 1 cut(s) 912
PfeI GAWTC 4 cut(s) 833, 884, 899, 1063
PflFI GACNNNGTC 1 cut(s) 577
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 6 cut(s) 68, 148, 202, 567, 570, 1152
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PpuMI RGGWCCY 1 cut(s) 1090
Psp124BI GAGCTC 1 cut(s) 762
Psp5II RGGWCCY 1 cut(s) 1090
Psp6I CCWGG 5 cut(s) 42, 104, 295, 321, 1093
PspGI CCWGG 5 cut(s) 42, 104, 295, 321, 1093
PspN4I GGNNCC 4 cut(s) 301, 420, 1021, 1092
PspPI GGNCC 1 cut(s) 1090
PspPPI RGGWCCY 1 cut(s) 1090
PspXI VCTCGAGB 1 cut(s) 761
PstI CTGCAG 2 cut(s) 202, 485
PsuI RGATCY 1 cut(s) 1019
PsyI GACNNNGTC 1 cut(s) 577
PteI GCGCGC 1 cut(s) 648
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 451, 779
RsaNI GTAC 2 cut(s) 450, 778
SacI GAGCTC 1 cut(s) 762
SapI GCTCTTC 1 cut(s) 912
SaqAI TTAA 3 cut(s) 27, 753, 843
SatI GCNGC 6 cut(s) 67, 147, 201, 566, 569, 1151
Sau3AI GATC 3 cut(s) 655, 802, 1019
Sau96I GGNCC 1 cut(s) 1090
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 5 cut(s) 44, 106, 297, 323, 1095
SduI GDGCHC 1 cut(s) 762
SfaNI GCATC 3 cut(s) 22, 943, 1079
SfcI CTRYAG 2 cut(s) 198, 481
Sfr274I CTCGAG 1 cut(s) 761
SinI GGWCC 1 cut(s) 1090
SlaI CTCGAG 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 6 cut(s) 79, 536, 606, 797, 939, 1012
SsiI CCGC 3 cut(s) 513, 936, 1079
SspMI CTAG 3 cut(s) 156, 494, 659
SstI GAGCTC 1 cut(s) 762
StyD4I CCNGG 5 cut(s) 42, 104, 295, 321, 1093
TaaI ACNGT 2 cut(s) 140, 874
TaiI ACGT 1 cut(s) 1057
TaqI TCGA 1 cut(s) 762
TasI AATT 6 cut(s) 79, 536, 606, 797, 939, 1012
TatI WGTACW 1 cut(s) 777
TfiI GAWTC 4 cut(s) 833, 884, 899, 1063
Tru1I TTAA 3 cut(s) 27, 753, 843
Tru9I TTAA 3 cut(s) 27, 753, 843
TscAI CASTG 4 cut(s) 241, 727, 879, 901
TseFI GTSAC 3 cut(s) 579, 868, 909
TseI GCWGC 6 cut(s) 66, 146, 200, 565, 568, 1150
Tsp45I GTSAC 3 cut(s) 579, 868, 909
TspDTI ATGAA 8 cut(s) 41, 444, 592, 810, 861, 870, 978, 1076
TspGWI ACGGA 1 cut(s) 1135
TspRI CASTG 4 cut(s) 241, 727, 879, 901
Tth111I GACNNNGTC 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 1090
XapI RAATTY 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 761
XspI CTAG 3 cut(s) 156, 494, 659
Zsp2I ATGCAT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.