Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007211

Physical Location & Seq

Genomic Coordinates Reverse (-)

24816692 .. 24820533

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG158100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCTGCAACAAACCCCTCTACAAGCTCGGTTATATCCTGGTTCCTCTACTCCATCTCTCTGTCTGGCTTGCCCTCTCTCATCTGCTCCTATGATTGTTGACTTGAATACAGGAAGTGCAACTATGCTTCCAGTCTCCATTCCAGACTCTAACCCAGGATTTGCCCCTCCATCGCGGAATAAAATCTCTGATGGAACTCCCCCCTTTTCTCCTACTGCTGCTTGCTTTAATAAGTATGGGGATCTGGTTTACGCAGGGAACTCCAAAGGAGAAATACTTCTAATAGATTATAAAAGTGTCCAAGTGCTTGCAATGGTTCCTACTTCTGGAGGTTCCGTGATTAAGAATATAGTATTCAGCAGGAATGGTCAGTATCTGCTTACAAATTCGAATGATAGAACAATAAGGATTTACGAGAACCTTCTTCCCTTGAAAGATGGACTCAAAGCCCTAAATGGCTTGACTGCTCTTGATGGACTAGATGATGCTGAGAAGTTGAAAGTTGTTGGATCAAAATGCTTAACACTATTCCGTGAGTTTCAAGATACCATCACAAAGATGCATTGGAAAGCACCTTGTTTCAGTGGTGATGGTGAGTGGGTAATTGGTGGTTCTGCAAGCAAAGGTGAACACAAGATTTACATATGGGACAGGGCTGGGCATCTTGTGAAAATTCTTGAAGGGCCAAAGGAAGCCTTGATCGATTTAGTGTGGCATCCTGTTCATCCCATTGTTGTCTCTGTTTCCCTGACGGGCTTGGTTTATATTTGGGCTAAAGATTACACTGAGAACTGGAGTGCATTTGCTCCTGATTTTAAGGAGCTCGAGGAAAATGAGGAGTACATAGAACGAGAAGATGAATTTGATCTGATACCCGAAACTGAAAAGGCCAAAGAATCTAATGTTAATGAAGATGATGAAGTTGATATCGTGACAGTGGACAAGGATTCAGCTTTTAGTGATTCAGATATGTCACAGGAAGAGCTATGCTTCTTGCCAGCAATTCCTTTGCCTGATGCTCCTGAGCAACAAGACAAGTGCTTAGAAAGTTCATCAAAGTTGGTGGAAAGTAATAATTCTGGCTCCCCTCTTTCAGAAGAGGGCAGACCTAATGGTCGTGCAATGAATCATGCATCCAGTCCGCTTGAAGAGGATCCTGGAGCAACACGCTTGAAAAGAAAACGGAAGCCTTCTGAAAAGTGGTTGGACTTGCAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034708 GO:0034968 GO:0035064 GO:0035097 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044666 GO:0048188 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051568 GO:0051716 GO:0061458 GO:0070013 GO:0071339 GO:0071704 GO:0071840 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

406

Amino Acids

44.69

Weight (kDa)

4.76

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML_2	PF23414	72 - 139	1.1e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21060
fragaria_vesca	FvH4_2g10510 FvH4_2g10510 FvH4_2g10510 FvH4_2g10510
malus_domestica	MD02G1259400.v1.1 MD07G1061200.v1.1
prunus_persica	Prupe.5G058900_v2.0.a1 Prupe.5G058900_v2.0.a1
pyrus_communis	pycom02g22080
rosa_chinensis	RchiOBHm_Chr6g0268021
rosa_laevigata	RLG00000013939
rosa_multiflora	Rmu_sc0001839.1_g000031 Rmu_sc0003304.1_g000001 Rmu_sc0003304.1_g000039 Rmu_sc0004529.1_g000038
rosa_roxburghii	Rroxscaffold_7G00200120 Rroxscaffold_7G00200140
rosa_rugosa	Rorug06G0038800
rosa_samantha	Rh6AG158100 Rh6BG162100 Rh6CG156300 Rh6DG147700
rosa_wichuraiana	Rw0G021300 Rw6G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AasI	GACNNNNNNGTC	1 cut(s)	1113
AccII	CGCG	1 cut(s)	175
AciI	CCGC	2 cut(s)	175, 1142
AclWI	GGATC	4 cut(s)	249, 517, 1148, 1161
AcsI	RAATTY	3 cut(s)	385, 672, 860
AfaI	GTAC	1 cut(s)	842
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	7 cut(s)	106, 433, 499, 542, 680, 1148, 1174
AjnI	CCWGG	3 cut(s)	37, 154, 1156
AluBI	AGCT	5 cut(s)	26, 823, 953, 985, 1216
AluI	AGCT	5 cut(s)	26, 823, 953, 985, 1216
Alw21I	GWGCWC	1 cut(s)	825
Alw26I	GTCTC	2 cut(s)	139, 742
AlwI	GGATC	4 cut(s)	249, 517, 1148, 1161
AlwNI	CAGNNNCTG	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	824
AoxI	GGCC	2 cut(s)	683, 888
ApeKI	GCWGC	3 cut(s)	4, 218, 1213
ApoI	RAATTY	3 cut(s)	385, 672, 860
Asp700I	GAANNNNTTC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	683
AsuHPI	GGTGA	3 cut(s)	599, 605, 638
AsuII	TTCGAA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	824
BamHI	GGATCC	1 cut(s)	1153
BanII	GRGCYC	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	825
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	7 cut(s)	61, 178, 185, 431, 467, 557, 584
BciT130I	CCWGG	3 cut(s)	39, 156, 1158
BcoDI	GTCTC	2 cut(s)	139, 742
BfaI	CTAG	1 cut(s)	479
BisI	GCNGC	3 cut(s)	5, 219, 1214
BlsI	GCNGC	3 cut(s)	6, 220, 1215
Bme1390I	CCNGG	3 cut(s)	39, 156, 1158
BmeT110I	CYCGRG	1 cut(s)	824
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	5 cut(s)	43, 318, 334, 1084, 1155
BmrFI	CCNGG	3 cut(s)	39, 156, 1158
BmsI	GCATC	6 cut(s)	475, 549, 670, 724, 1006, 1142
BpmI	CTGGAG	3 cut(s)	348, 814, 1179
Bpu10I	CCTNAGC	1 cut(s)	1023
Bpu14I	TTCGAA	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	702
BsaJI	CCNNGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	3 cut(s)	131, 797, 1137
Bse3DI	GCAATG	2 cut(s)	318, 1128
BseBI	CCWGG	3 cut(s)	39, 156, 1158
BseCI	ATCGAT	1 cut(s)	702
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	3 cut(s)	715, 724, 1133
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	2 cut(s)	318, 1128
BseMII	CTCAG	3 cut(s)	480, 777, 1014
BseNI	ACTGG	3 cut(s)	131, 797, 1137
BseRI	GAGGAG	1 cut(s)	851
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	685, 890
BshVI	ATCGAT	1 cut(s)	702
BsiHKAI	GWGCWC	1 cut(s)	825
BsiHKCI	CYCGRG	1 cut(s)	824
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	2 cut(s)	139, 742
BsmFI	GGGAC	1 cut(s)	662
BsnI	GGCC	2 cut(s)	685, 890
BsoBI	CYCGRG	1 cut(s)	824
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	825
Bsp143I	GATC	5 cut(s)	241, 509, 699, 865, 1153
BspACI	CCGC	2 cut(s)	175, 1142
BspANI	GGCC	2 cut(s)	685, 890
BspCNI	CTCAG	3 cut(s)	481, 778, 1015
BspDI	ATCGAT	1 cut(s)	702
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	5 cut(s)	43, 318, 334, 1084, 1155
BspPI	GGATC	4 cut(s)	249, 517, 1148, 1161
BspQI	GCTCTTC	1 cut(s)	975
BspT104I	TTCGAA	1 cut(s)	389
BsrDI	GCAATG	2 cut(s)	318, 1128
BsrI	ACTGG	3 cut(s)	131, 797, 1137
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	5 cut(s)	241, 509, 699, 865, 1153
Bst2UI	CCWGG	3 cut(s)	39, 156, 1158
Bst4CI	ACNGT	1 cut(s)	937
Bst6I	CTCTTC	3 cut(s)	975, 1092, 1143
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	5 cut(s)	70, 223, 309, 619, 999
BstDEI	CTNAG	4 cut(s)	489, 786, 1023, 1042
BstF5I	GGATG	3 cut(s)	715, 724, 1133
BstFNI	CGCG	1 cut(s)	175
BstKTI	GATC	5 cut(s)	244, 512, 702, 868, 1156
BstMAI	GTCTC	2 cut(s)	139, 742
BstMBI	GATC	5 cut(s)	241, 509, 699, 865, 1153
BstNI	CCWGG	3 cut(s)	39, 156, 1158
BstSCI	CCNGG	3 cut(s)	37, 154, 1156
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	2 cut(s)	241, 1153
BstYI	RGATCY	2 cut(s)	241, 1153
Bsu15I	ATCGAT	1 cut(s)	702
BsuRI	GGCC	2 cut(s)	685, 890
BsuTUI	ATCGAT	1 cut(s)	702
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	715, 724, 1133
BtsIMutI	CAGTG	3 cut(s)	589, 783, 942
Cac8I	GCNNGC	5 cut(s)	70, 223, 309, 619, 999
CaiI	CAGNNNCTG	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	683
ClaI	ATCGAT	1 cut(s)	702
Csp6I	GTAC	1 cut(s)	841
CspCI	CAANNNNNGTGG	2 cut(s)	1044, 1079
CviAII	CATG	1 cut(s)	1130
CviQI	GTAC	1 cut(s)	841
DdeI	CTNAG	4 cut(s)	489, 786, 1023, 1042
DpnI	GATC	5 cut(s)	243, 511, 701, 867, 1155
DpnII	GATC	5 cut(s)	241, 509, 699, 865, 1153
DrdI	GACNNNNNNGTC	1 cut(s)	1113
DseDI	GACNNNNNNGTC	1 cut(s)	1113
Eam1104I	CTCTTC	3 cut(s)	975, 1092, 1143
EarI	CTCTTC	3 cut(s)	975, 1092, 1143
Ecl136II	GAGCTC	1 cut(s)	823
Eco24I	GRGCYC	1 cut(s)	825
Eco32I	GATATC	1 cut(s)	928
Eco53kI	GAGCTC	1 cut(s)	823
Eco88I	CYCGRG	1 cut(s)	824
EcoICRI	GAGCTC	1 cut(s)	823
EcoRII	CCWGG	3 cut(s)	37, 154, 1156
EcoRV	GATATC	1 cut(s)	928
EcoT22I	ATGCAT	2 cut(s)	564, 1135
EcoT38I	GRGCYC	1 cut(s)	825
FaeI	CATG	1 cut(s)	1133
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	1 cut(s)	1129
FauNDI	CATATG	1 cut(s)	644
Fnu4HI	GCNGC	3 cut(s)	5, 219, 1214
FokI	GGATG	3 cut(s)	702, 711, 1120
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	3 cut(s)	5, 219, 1214
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	3 cut(s)	5, 219, 1214
GsaI	CCCAGC	1 cut(s)	660
GsuI	CTGGAG	3 cut(s)	348, 814, 1179
HaeIII	GGCC	2 cut(s)	685, 890
Hin1II	CATG	1 cut(s)	1133
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	6 cut(s)	146, 441, 896, 947, 962, 1126
HphI	GGTGA	3 cut(s)	599, 605, 638
Hpy166II	GTNNAC	4 cut(s)	100, 250, 629, 940
Hpy188I	TCNGA	5 cut(s)	190, 870, 967, 1096, 1195
Hpy188III	TCNNGA	8 cut(s)	143, 327, 470, 542, 677, 809, 931, 1022
Hpy8I	GTNNAC	4 cut(s)	100, 250, 629, 940
HpyAV	CCTTC	3 cut(s)	431, 674, 1200
HpyCH4III	ACNGT	1 cut(s)	937
HpyCH4V	TGCA	9 cut(s)	7, 119, 311, 562, 617, 800, 1121, 1133, 1213
HpyF3I	CTNAG	4 cut(s)	489, 786, 1023, 1042
Hsp92II	CATG	1 cut(s)	1133
Kzo9I	GATC	5 cut(s)	241, 509, 699, 865, 1153
LguI	GCTCTTC	1 cut(s)	975
LmnI	GCTCC	6 cut(s)	91, 811, 820, 1024, 1088, 1160
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	6 cut(s)	475, 549, 670, 724, 1006, 1142
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	2 cut(s)	931, 972
MalI	GATC	5 cut(s)	243, 511, 701, 867, 1155
MboI	GATC	5 cut(s)	241, 509, 699, 865, 1153
MboII	GAAGA	6 cut(s)	416, 866, 923, 992, 1109, 1160
MflI	RGATCY	2 cut(s)	241, 1153
MhlI	GDGCHC	1 cut(s)	825
MluCI	AATT	6 cut(s)	385, 603, 672, 860, 1002, 1075
MlyI	GAGTC	2 cut(s)	140, 435
MmeI	TCCRAC	2 cut(s)	487, 1185
Mph1103I	ATGCAT	2 cut(s)	564, 1135
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	5 cut(s)	228, 342, 521, 816, 906
MslI	CAYNNNNRTG	1 cut(s)	557
MspR9I	CCNGG	3 cut(s)	39, 156, 1158
MvaI	CCWGG	3 cut(s)	39, 156, 1158
MvnI	CGCG	1 cut(s)	175
NdeI	CATATG	1 cut(s)	644
NdeII	GATC	5 cut(s)	241, 509, 699, 865, 1153
NlaIII	CATG	1 cut(s)	1133
NlaIV	GGNNCC	5 cut(s)	43, 318, 334, 1084, 1155
NmuCI	GTSAC	2 cut(s)	931, 972
NsiI	ATGCAT	2 cut(s)	564, 1135
NspV	TTCGAA	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	824
PciSI	GCTCTTC	1 cut(s)	975
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	4 cut(s)	896, 947, 962, 1126
PfoI	TCCNGGA	1 cut(s)	1156
PkrI	GCNGC	3 cut(s)	6, 220, 1215
PleI	GAGTC	2 cut(s)	140, 435
PpsI	GAGTC	2 cut(s)	140, 435
PsiI	TTATAA	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	825
Psp6I	CCWGG	3 cut(s)	37, 154, 1156
PspFI	CCCAGC	1 cut(s)	656
PspGI	CCWGG	3 cut(s)	37, 154, 1156
PspN4I	GGNNCC	5 cut(s)	43, 318, 334, 1084, 1155
PspPI	GGNCC	1 cut(s)	683
PspXI	VCTCGAGB	1 cut(s)	824
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	241, 1153
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
RseI	CAYNNNNRTG	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	825
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	5 cut(s)	228, 342, 521, 816, 906
SatI	GCNGC	3 cut(s)	5, 219, 1214
Sau3AI	GATC	5 cut(s)	241, 509, 699, 865, 1153
Sau96I	GGNCC	1 cut(s)	683
SchI	GAGTC	2 cut(s)	140, 435
ScrFI	CCNGG	3 cut(s)	39, 156, 1158
SduI	GDGCHC	1 cut(s)	825
SfaNI	GCATC	6 cut(s)	475, 549, 670, 724, 1006, 1142
Sfr274I	CTCGAG	1 cut(s)	824
SfuI	TTCGAA	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	824
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	6 cut(s)	385, 603, 672, 860, 1002, 1075
SsiI	CCGC	2 cut(s)	175, 1142
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	825
StyD4I	CCNGG	3 cut(s)	37, 154, 1156
TaaI	ACNGT	1 cut(s)	937
TaqI	TCGA	3 cut(s)	389, 702, 825
TasI	AATT	6 cut(s)	385, 603, 672, 860, 1002, 1075
TatI	WGTACW	1 cut(s)	840
TfiI	GAWTC	4 cut(s)	896, 947, 962, 1126
Tru1I	TTAA	5 cut(s)	228, 342, 521, 816, 906
Tru9I	TTAA	5 cut(s)	228, 342, 521, 816, 906
TscAI	CASTG	3 cut(s)	589, 790, 942
TseFI	GTSAC	2 cut(s)	931, 972
TseI	GCWGC	3 cut(s)	4, 218, 1213
Tsp45I	GTSAC	2 cut(s)	931, 972
TspDTI	ATGAA	6 cut(s)	713, 873, 924, 933, 1041, 1139
TspGWI	ACGGA	3 cut(s)	325, 521, 1198
TspRI	CASTG	3 cut(s)	589, 790, 942
XapI	RAATTY	3 cut(s)	385, 672, 860
XhoI	CTCGAG	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	1 cut(s)	479
Zsp2I	ATGCAT	2 cut(s)	564, 1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.