Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007211

Physical Location & Seq

Genomic Coordinates Forward (+)

47431623 .. 47435429

Gene Structure 3807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTTCCTACTTCTGGAGGTTCCGTGATTAAGAATATAGTATTCAGCAGGAATGGTCAGTATCTGCTTACAAATTCAAATGATAGAACAATAAGGATTTACGAGAACCTTCTTCCCTTGAAAGGTGGACTCAAAGCCTTAAATCGCTTGACTGCTCTTGATGGACTAGATGATGCTGAGAAGTTGAAAGTTGTTGGATCAAAATGCTTAACACTATTCCGTGAGTTTCAAGATACCATCACAAAGATGCATTGGAAAGCACCTTGTTTCAGTGGTGATGGTGAGTGGGTAATTGGTGGTTCTGCAAGCAAAGGAGAACACAAGATTTACATATGGGACAGGGCTGGGCATCTTGTGAAAATTCTTGAAGGGCCAAAGGAAGCTTTGATCGATTTAGTGTGGCATCCTGTTCATCCCATTGTTGTCTCTGTTTCCCTGACGGGCTTGGTTTATATTTGGGCTAAAGATTACACTGAGAACTGGAGTGCATTTGCTCCTGATTTTAAGGAGCTCGAGGAAAATGAGGAGTACATAGAACGAGAAGATGAATTTGATCTGATACCCGAAACTGAAAAGGCCAAAGAATCTAATGTTAATGAAGATGATGAAGTTGATATCGTGACAGTGGACAAGGATTCAGCTTTCAGTGATTCAGATATGTCACAGGAAGAGCTATGCTTCTTGCCAGCAATTCCTTTGCCTGATGCTCCTGAGCAACAAGACAAGTGCTTAGAAAGTTCATCAAAGTTGGTGGAAAGTAATAATTCTGGCTCCCCTCTTTCAGAAGAGGGCAGACCTAATGGTCGTGCAATGAATCATGCATCAAGTCCGCTTGAAGAGGACCCTGGAGCAACACGCTTGAAAAGAAAACGGAAGCCTTCTGAAAAGTGGTTGGACTTGCAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034708 GO:0034968 GO:0035064 GO:0035097 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044666 GO:0048188 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051568 GO:0051716 GO:0061458 GO:0070013 GO:0071339 GO:0071704 GO:0071840 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

302

Amino Acids

33.86

Weight (kDa)

4.79

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21060
fragaria_vesca	FvH4_2g10510 FvH4_2g10510 FvH4_2g10510 FvH4_2g10510
malus_domestica	MD02G1259400.v1.1 MD07G1061200.v1.1
prunus_persica	Prupe.5G058900_v2.0.a1 Prupe.5G058900_v2.0.a1
pyrus_communis	pycom02g22080
rosa_chinensis	RchiOBHm_Chr6g0268021
rosa_laevigata	RLG00000013939
rosa_multiflora	Rmu_sc0001839.1_g000031 Rmu_sc0003304.1_g000001 Rmu_sc0003304.1_g000039 Rmu_sc0004529.1_g000038
rosa_roxburghii	Rroxscaffold_7G00200120 Rroxscaffold_7G00200140
rosa_rugosa	Rorug06G0038800
rosa_samantha	Rh6AG158100 Rh6BG162100 Rh6CG156300 Rh6DG147700
rosa_wichuraiana	Rw0G021300 Rw6G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	801
AciI	CCGC	1 cut(s)	830
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	3 cut(s)	73, 360, 548
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	14, 122
AgsI	TTSAA	7 cut(s)	78, 121, 187, 230, 368, 836, 862
AjnI	CCWGG	1 cut(s)	844
AluBI	AGCT	5 cut(s)	383, 511, 641, 673, 904
AluI	AGCT	5 cut(s)	383, 511, 641, 673, 904
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	1 cut(s)	205
AlwNI	CAGNNNCTG	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	2 cut(s)	371, 576
ApeKI	GCWGC	1 cut(s)	901
ApoI	RAATTY	3 cut(s)	73, 360, 548
AspS9I	GGNCC	2 cut(s)	371, 841
AsuHPI	GGTGA	2 cut(s)	287, 293
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	841
BanII	GRGCYC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	513
BccI	CCATC	3 cut(s)	155, 245, 272
BciT130I	CCWGG	1 cut(s)	846
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	902
BlsI	GCNGC	1 cut(s)	903
Bme1390I	CCNGG	1 cut(s)	846
Bme18I	GGWCC	1 cut(s)	841
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	371, 841
BmiI	GGNNCC	4 cut(s)	6, 22, 772, 843
BmrFI	CCNGG	1 cut(s)	846
BmsI	GCATC	6 cut(s)	163, 237, 358, 412, 694, 830
BpmI	CTGGAG	3 cut(s)	36, 502, 867
Bpu10I	CCTNAGC	1 cut(s)	711
Bsa29I	ATCGAT	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	844
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 122
Bse1I	ACTGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	816
BseBI	CCWGG	1 cut(s)	846
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	844
BseGI	GGATG	2 cut(s)	403, 412
BseLI	CCNNNNNNNGG	2 cut(s)	14, 122
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	3 cut(s)	168, 465, 702
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	1 cut(s)	539
BseYI	CCCAGC	1 cut(s)	344
BshFI	GGCC	2 cut(s)	373, 578
BshVI	ATCGAT	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	14, 122
BsmAI	GTCTC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	373, 578
BsoBI	CYCGRG	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	3 cut(s)	197, 387, 553
BspACI	CCGC	1 cut(s)	830
BspANI	GGCC	2 cut(s)	373, 578
BspCNI	CTCAG	3 cut(s)	169, 466, 703
BspDI	ATCGAT	1 cut(s)	390
BspLI	GGNNCC	4 cut(s)	6, 22, 772, 843
BspPI	GGATC	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	663
BsrDI	GCAATG	1 cut(s)	816
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	844
BssMI	GATC	3 cut(s)	197, 387, 553
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	3 cut(s)	663, 780, 831
BstC8I	GCNNGC	2 cut(s)	307, 687
BstDEI	CTNAG	4 cut(s)	177, 474, 711, 730
BstF5I	GGATG	2 cut(s)	403, 412
BstKTI	GATC	3 cut(s)	200, 390, 556
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	3 cut(s)	197, 387, 553
BstNI	CCWGG	1 cut(s)	846
BstSCI	CCNGG	1 cut(s)	844
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	373, 578
BsuTUI	ATCGAT	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	403, 412
BtsIMutI	CAGTG	4 cut(s)	277, 471, 630, 652
Cac8I	GCNNGC	2 cut(s)	307, 687
CaiI	CAGNNNCTG	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	371, 841
ClaI	ATCGAT	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	529
CspCI	CAANNNNNGTGG	2 cut(s)	732, 767
CviAII	CATG	1 cut(s)	818
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	4 cut(s)	177, 474, 711, 730
DpnI	GATC	3 cut(s)	199, 389, 555
DpnII	GATC	3 cut(s)	197, 387, 553
DrdI	GACNNNNNNGTC	1 cut(s)	801
DseDI	GACNNNNNNGTC	1 cut(s)	801
Eam1104I	CTCTTC	3 cut(s)	663, 780, 831
EarI	CTCTTC	3 cut(s)	663, 780, 831
Ecl136II	GAGCTC	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	841
Eco53kI	GAGCTC	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	512
EcoICRI	GAGCTC	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	841
EcoRII	CCWGG	1 cut(s)	844
EcoRV	GATATC	1 cut(s)	616
EcoT22I	ATGCAT	2 cut(s)	252, 823
EcoT38I	GRGCYC	1 cut(s)	513
FaeI	CATG	1 cut(s)	821
FaiI	YATR	8 cut(s)	38, 332, 334, 453, 533, 659, 676, 819
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	817
FauNDI	CATATG	1 cut(s)	332
Fnu4HI	GCNGC	1 cut(s)	902
FokI	GGATG	2 cut(s)	390, 399
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	1 cut(s)	902
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	1 cut(s)	902
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	3 cut(s)	36, 502, 867
HaeIII	GGCC	2 cut(s)	373, 578
Hin1II	CATG	1 cut(s)	821
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	5 cut(s)	129, 584, 635, 650, 814
HphI	GGTGA	2 cut(s)	287, 293
Hpy166II	GTNNAC	2 cut(s)	128, 628
Hpy188I	TCNGA	4 cut(s)	558, 655, 784, 883
Hpy188III	TCNNGA	7 cut(s)	15, 158, 230, 365, 497, 619, 710
Hpy8I	GTNNAC	2 cut(s)	128, 628
HpyAV	CCTTC	3 cut(s)	119, 362, 888
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4V	TGCA	6 cut(s)	250, 305, 488, 809, 821, 901
HpyF3I	CTNAG	4 cut(s)	177, 474, 711, 730
Hsp92II	CATG	1 cut(s)	821
Kzo9I	GATC	3 cut(s)	197, 387, 553
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	5 cut(s)	499, 508, 712, 776, 848
LweI	GCATC	6 cut(s)	163, 237, 358, 412, 694, 830
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	619, 660
MalI	GATC	3 cut(s)	199, 389, 555
MboI	GATC	3 cut(s)	197, 387, 553
MboII	GAAGA	6 cut(s)	104, 554, 611, 680, 797, 848
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	6 cut(s)	73, 291, 360, 548, 690, 763
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	2 cut(s)	175, 873
MnlI	CCTC	6 cut(s)	11, 508, 517, 781, 786, 832
Mph1103I	ATGCAT	2 cut(s)	252, 823
MseI	TTAA	5 cut(s)	30, 140, 209, 504, 594
MslI	CAYNNNNRTG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	846
NdeI	CATATG	1 cut(s)	332
NdeII	GATC	3 cut(s)	197, 387, 553
NlaIII	CATG	1 cut(s)	821
NlaIV	GGNNCC	4 cut(s)	6, 22, 772, 843
NmuCI	GTSAC	2 cut(s)	619, 660
NsiI	ATGCAT	2 cut(s)	252, 823
PaeR7I	CTCGAG	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	663
PfeI	GAWTC	4 cut(s)	584, 635, 650, 814
PkrI	GCNGC	1 cut(s)	903
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PpuMI	RGGWCCY	1 cut(s)	841
Psp124BI	GAGCTC	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	844
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	4 cut(s)	6, 22, 772, 843
PspPI	GGNCC	2 cut(s)	371, 841
PspPPI	RGGWCCY	1 cut(s)	841
PspXI	VCTCGAGB	1 cut(s)	512
PstNI	CAGNNNCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	5 cut(s)	30, 140, 209, 504, 594
SatI	GCNGC	1 cut(s)	902
Sau3AI	GATC	3 cut(s)	197, 387, 553
Sau96I	GGNCC	2 cut(s)	371, 841
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	846
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	6 cut(s)	163, 237, 358, 412, 694, 830
Sfr274I	CTCGAG	1 cut(s)	512
SinI	GGWCC	1 cut(s)	841
SlaI	CTCGAG	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	6 cut(s)	73, 291, 360, 548, 690, 763
SsiI	CCGC	1 cut(s)	830
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	844
TaaI	ACNGT	1 cut(s)	625
TaqI	TCGA	2 cut(s)	390, 513
TasI	AATT	6 cut(s)	73, 291, 360, 548, 690, 763
TatI	WGTACW	1 cut(s)	528
TfiI	GAWTC	4 cut(s)	584, 635, 650, 814
Tru1I	TTAA	5 cut(s)	30, 140, 209, 504, 594
Tru9I	TTAA	5 cut(s)	30, 140, 209, 504, 594
TscAI	CASTG	4 cut(s)	277, 478, 630, 652
TseFI	GTSAC	2 cut(s)	619, 660
TseI	GCWGC	1 cut(s)	901
Tsp45I	GTSAC	2 cut(s)	619, 660
TspDTI	ATGAA	6 cut(s)	401, 561, 612, 621, 729, 827
TspGWI	ACGGA	3 cut(s)	13, 209, 886
TspRI	CASTG	4 cut(s)	277, 478, 630, 652
VpaK11BI	GGWCC	1 cut(s)	841
XapI	RAATTY	3 cut(s)	73, 360, 548
XhoI	CTCGAG	1 cut(s)	512
XspI	CTAG	1 cut(s)	167
Zsp2I	ATGCAT	2 cut(s)	252, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.