E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39810 AT2G39810 |
| fragaria_vesca | FvH4_5g19540 FvH4_5g19540 FvH4_5g19540 FvH4_5g19540 |
| malus_domestica | MD04G1060900.v1.1 MD06G1054200.v1.1 |
| prunus_persica | Prupe.5G064600_v2.0.a1 Prupe.5G064600_v2.0.a1 Prupe.5G064600_v2.0.a1 Prupe.5G064600_v2.0.a1 |
| pyrus_communis | pycom04g05480 pycom06g04560 |
| rosa_chinensis | RchiOBHm_Chr7g0204151 |
| rosa_laevigata | RLG00000003484 |
| rosa_multiflora | Rmu_sc0001311.1_g000032 |
| rosa_roxburghii | Rroxscaffold_3G00253300 |
| rosa_rugosa | Rorug07G0081200 |
| rosa_samantha | Rh7AG211100 Rh7BG209700 Rh7CG223600 Rh7DG217900 |
| rosa_wichuraiana | Rw7G018370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 567 |
| AatII | GACGTC | 1 cut(s) | 366 |
| Acc65I | GGTACC | 1 cut(s) | 914 |
| AccB1I | GGYRCC | 2 cut(s) | 914, 2015 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 245, 759 |
| AccBSI | CCGCTC | 1 cut(s) | 1920 |
| AccI | GTMKAC | 2 cut(s) | 766, 1660 |
| AccII | CGCG | 1 cut(s) | 2583 |
| AciI | CCGC | 4 cut(s) | 202, 1853, 1920, 2576 |
| AclWI | GGATC | 3 cut(s) | 467, 1751, 2142 |
| AcsI | RAATTY | 7 cut(s) | 228, 1644, 1702, 1876, 2037, 2337, 2704 |
| AcuI | CTGAAG | 4 cut(s) | 20, 912, 1839, 2220 |
| AcyI | GRCGYC | 2 cut(s) | 363, 933 |
| AdeI | CACNNNGTG | 2 cut(s) | 819, 1454 |
| AfaI | GTAC | 8 cut(s) | 834, 916, 1154, 1368, 1432, 1814, 2485, 2809 |
| AfeI | AGCGCT | 3 cut(s) | 104, 1805, 2509 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 245, 759, 2416 |
| AflII | CTTAAG | 1 cut(s) | 611 |
| AflIII | ACRYGT | 1 cut(s) | 2048 |
| AgeI | ACCGGT | 1 cut(s) | 1809 |
| AhlI | ACTAGT | 2 cut(s) | 2084, 2804 |
| AjnI | CCWGG | 5 cut(s) | 396, 936, 1238, 2150, 2415 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2670, 2702 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1847, 1879, 2368, 2400 |
| Alw21I | GWGCWC | 1 cut(s) | 607 |
| Alw26I | GTCTC | 4 cut(s) | 114, 684, 1024, 1192 |
| Alw44I | GTGCAC | 1 cut(s) | 603 |
| AlwI | GGATC | 3 cut(s) | 467, 1751, 2142 |
| Aor51HI | AGCGCT | 3 cut(s) | 104, 1805, 2509 |
| AoxI | GGCC | 4 cut(s) | 750, 794, 869, 1336 |
| ApaLI | GTGCAC | 1 cut(s) | 603 |
| ApeKI | GCWGC | 4 cut(s) | 739, 851, 1085, 2538 |
| ApoI | RAATTY | 7 cut(s) | 228, 1644, 1702, 1876, 2037, 2337, 2704 |
| AseI | ATTAAT | 1 cut(s) | 1937 |
| AsiGI | ACCGGT | 1 cut(s) | 1809 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 33, 1077 |
| Asp718I | GGTACC | 1 cut(s) | 914 |
| AspA2I | CCTAGG | 1 cut(s) | 2218 |
| AspLEI | GCGC | 4 cut(s) | 105, 898, 1806, 2510 |
| AspS9I | GGNCC | 3 cut(s) | 1337, 1416, 2717 |
| AsuC2I | CCSGG | 1 cut(s) | 1420 |
| AsuHPI | GGTGA | 4 cut(s) | 1307, 1489, 1586, 2433 |
| AvaII | GGWCC | 2 cut(s) | 1416, 2717 |
| AvrII | CCTAGG | 1 cut(s) | 2218 |
| AxyI | CCTNAGG | 1 cut(s) | 2061 |
| BaeGI | GKGCMC | 1 cut(s) | 607 |
| BanI | GGYRCC | 2 cut(s) | 914, 2015 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1497, 1529 |
| BbsI | GAAGAC | 3 cut(s) | 737, 936, 1623 |
| Bbv12I | GWGCWC | 1 cut(s) | 607 |
| BbvCI | CCTCAGC | 1 cut(s) | 2359 |
| BbvI | GCAGC | 4 cut(s) | 751, 838, 1072, 2550 |
| BccI | CCATC | 6 cut(s) | 332, 1007, 1407, 1421, 2418, 2718 |
| BceAI | ACGGC | 1 cut(s) | 1681 |
| BciT130I | CCWGG | 5 cut(s) | 398, 938, 1240, 2152, 2417 |
| BclI | TGATCA | 2 cut(s) | 1282, 1834 |
| BcnI | CCSGG | 1 cut(s) | 1420 |
| BcoDI | GTCTC | 4 cut(s) | 114, 684, 1024, 1192 |
| BcuI | ACTAGT | 2 cut(s) | 2084, 2804 |
| BfaI | CTAG | 7 cut(s) | 798, 1373, 1902, 2025, 2085, 2219, 2805 |
| BfmI | CTRYAG | 3 cut(s) | 1301, 1467, 2503 |
| BfoI | RGCGCY | 4 cut(s) | 106, 899, 1807, 2511 |
| BfrI | CTTAAG | 1 cut(s) | 611 |
| BglII | AGATCT | 2 cut(s) | 31, 1329 |
| BisI | GCNGC | 5 cut(s) | 740, 852, 1086, 1921, 2539 |
| BlnI | CCTAGG | 1 cut(s) | 2218 |
| BlpI | GCTNAGC | 1 cut(s) | 690 |
| BlsI | GCNGC | 5 cut(s) | 741, 853, 1087, 1922, 2540 |
| BmcAI | AGTACT | 2 cut(s) | 1368, 2809 |
| Bme1390I | CCNGG | 6 cut(s) | 398, 938, 1240, 1420, 2152, 2417 |
| Bme18I | GGWCC | 2 cut(s) | 1416, 2717 |
| BmgT120I | GGNCC | 3 cut(s) | 1337, 1416, 2717 |
| BmiI | GGNNCC | 3 cut(s) | 916, 1385, 2017 |
| BmrFI | CCNGG | 6 cut(s) | 398, 938, 1240, 1420, 2152, 2417 |
| BmrI | ACTGGG | 1 cut(s) | 1630 |
| BmsI | GCATC | 7 cut(s) | 68, 865, 1007, 1049, 2311, 2333, 2587 |
| BmuI | ACTGGG | 1 cut(s) | 1630 |
| BpiI | GAAGAC | 3 cut(s) | 737, 936, 1623 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1853, 1885 |
| BpmI | CTGGAG | 4 cut(s) | 419, 968, 1945, 2399 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2359 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 690 |
| BpuEI | CTTGAG | 1 cut(s) | 803 |
| BpuMI | CCSGG | 1 cut(s) | 1420 |
| BsaHI | GRCGYC | 2 cut(s) | 363, 933 |
| BsaI | GGTCTC | 2 cut(s) | 114, 684 |
| BsaJI | CCNNGG | 9 cut(s) | 396, 900, 936, 1238, 1697, 2218, 2227, 2624, 2640 |
| BsaWI | WCCGGW | 1 cut(s) | 1809 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1538, 1568, 1847, 1877 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 245, 759, 2416 |
| Bse118I | RCCGGY | 1 cut(s) | 1809 |
| Bse1I | ACTGG | 7 cut(s) | 468, 981, 1625, 2522, 2551, 2589, 2742 |
| Bse21I | CCTNAGG | 1 cut(s) | 2061 |
| Bse3DI | GCAATG | 5 cut(s) | 91, 808, 1199, 2282, 2574 |
| BseBI | CCWGG | 5 cut(s) | 398, 938, 1240, 2152, 2417 |
| BseDI | CCNNGG | 9 cut(s) | 396, 900, 936, 1238, 1697, 2218, 2227, 2624, 2640 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 245, 759, 2416 |
| BseMI | GCAATG | 5 cut(s) | 91, 808, 1199, 2282, 2574 |
| BseMII | CTCAG | 8 cut(s) | 116, 633, 704, 1029, 1347, 1995, 2052, 2373 |
| BseNI | ACTGG | 7 cut(s) | 468, 981, 1625, 2522, 2551, 2589, 2742 |
| BseRI | GAGGAG | 2 cut(s) | 359, 2771 |
| BseSI | GKGCMC | 1 cut(s) | 607 |
| BseXI | GCAGC | 4 cut(s) | 751, 838, 1072, 2550 |
| BseYI | CCCAGC | 2 cut(s) | 1339, 2534 |
| BsgI | GTGCAG | 2 cut(s) | 207, 480 |
| Bsh1236I | CGCG | 1 cut(s) | 2583 |
| BshFI | GGCC | 4 cut(s) | 752, 796, 871, 1338 |
| BshNI | GGYRCC | 2 cut(s) | 914, 2015 |
| BshTI | ACCGGT | 1 cut(s) | 1809 |
| BsiHKAI | GWGCWC | 1 cut(s) | 607 |
| BsiSI | CCGG | 2 cut(s) | 1419, 1810 |
| BslFI | GGGAC | 1 cut(s) | 918 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 245, 759, 2416 |
| BsmAI | GTCTC | 4 cut(s) | 114, 684, 1024, 1192 |
| BsmFI | GGGAC | 1 cut(s) | 918 |
| BsmI | GAATGC | 1 cut(s) | 1530 |
| BsnI | GGCC | 4 cut(s) | 752, 796, 871, 1338 |
| Bso31I | GGTCTC | 2 cut(s) | 114, 684 |
| Bsp1286I | GDGCHC | 1 cut(s) | 607 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 690 |
| Bsp19I | CCATGG | 1 cut(s) | 2227 |
| BspACI | CCGC | 4 cut(s) | 202, 1853, 1920, 2576 |
| BspANI | GGCC | 4 cut(s) | 752, 796, 871, 1338 |
| BspCNI | CTCAG | 8 cut(s) | 117, 632, 703, 1030, 1346, 1996, 2053, 2372 |
| BspFNI | CGCG | 1 cut(s) | 2583 |
| BspLI | GGNNCC | 3 cut(s) | 916, 1385, 2017 |
| BspMAI | CTGCAG | 2 cut(s) | 1305, 1471 |
| BspPI | GGATC | 3 cut(s) | 467, 1751, 2142 |
| BspT107I | GGYRCC | 2 cut(s) | 914, 2015 |
| BspTI | CTTAAG | 1 cut(s) | 611 |
| BspTNI | GGTCTC | 2 cut(s) | 114, 684 |
| BsrBI | CCGCTC | 1 cut(s) | 1920 |
| BsrDI | GCAATG | 5 cut(s) | 91, 808, 1199, 2282, 2574 |
| BsrFI | RCCGGY | 1 cut(s) | 1809 |
| BsrI | ACTGG | 7 cut(s) | 468, 981, 1625, 2522, 2551, 2589, 2742 |
| BssAI | RCCGGY | 1 cut(s) | 1809 |
| BssECI | CCNNGG | 9 cut(s) | 396, 900, 936, 1238, 1697, 2218, 2227, 2624, 2640 |
| BssNAI | GTATAC | 1 cut(s) | 1661 |
| BssNI | GRCGYC | 2 cut(s) | 363, 933 |
| BssT1I | CCWWGG | 4 cut(s) | 2218, 2227, 2624, 2640 |
| Bst1107I | GTATAC | 1 cut(s) | 1661 |
| Bst2UI | CCWGG | 5 cut(s) | 398, 938, 1240, 2152, 2417 |
| Bst4CI | ACNGT | 2 cut(s) | 970, 2204 |
| Bst6I | CTCTTC | 3 cut(s) | 1707, 2061, 2748 |
| BstACI | GRCGYC | 2 cut(s) | 363, 933 |
| BstAFI | CTTAAG | 1 cut(s) | 611 |
| BstC8I | GCNNGC | 4 cut(s) | 200, 292, 634, 1140 |
| BstDSI | CCRYGG | 3 cut(s) | 900, 1697, 2227 |
| BstEII | GGTNACC | 1 cut(s) | 2222 |
| BstFNI | CGCG | 1 cut(s) | 2583 |
| BstH2I | RGCGCY | 4 cut(s) | 106, 899, 1807, 2511 |
| BstHHI | GCGC | 4 cut(s) | 105, 898, 1806, 2510 |
| BstMAI | GTCTC | 4 cut(s) | 114, 684, 1024, 1192 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 629, 868, 1139, 1189, 1466, 2281 |
| BstNI | CCWGG | 5 cut(s) | 398, 938, 1240, 2152, 2417 |
| BstNSI | RCATGY | 3 cut(s) | 176, 1599, 2052 |
| BstPI | GGTNACC | 1 cut(s) | 2222 |
| BstSCI | CCNGG | 6 cut(s) | 396, 936, 1238, 1418, 2150, 2415 |
| BstSFI | CTRYAG | 3 cut(s) | 1301, 1467, 2503 |
| BstSLI | GKGCMC | 1 cut(s) | 607 |
| BstUI | CGCG | 1 cut(s) | 2583 |
| BstV1I | GCAGC | 4 cut(s) | 751, 838, 1072, 2550 |
| BstV2I | GAAGAC | 3 cut(s) | 737, 936, 1623 |
| BstX2I | RGATCY | 2 cut(s) | 31, 1329 |
| BstYI | RGATCY | 2 cut(s) | 31, 1329 |
| BstZ17I | GTATAC | 1 cut(s) | 1661 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2061 |
| BsuRI | GGCC | 4 cut(s) | 752, 796, 871, 1338 |
| BtgI | CCRYGG | 3 cut(s) | 900, 1697, 2227 |
| BtgZI | GCGATG | 1 cut(s) | 2564 |
| BtsI | GCAGTG | 1 cut(s) | 468 |
| BtsIMutI | CAGTG | 6 cut(s) | 284, 468, 475, 975, 1891, 2749 |
| Cac8I | GCNNGC | 4 cut(s) | 200, 292, 634, 1140 |
| CfoI | GCGC | 4 cut(s) | 105, 898, 1806, 2510 |
| Cfr10I | RCCGGY | 1 cut(s) | 1809 |
| Cfr13I | GGNCC | 3 cut(s) | 1337, 1416, 2717 |
| CseI | GACGC | 1 cut(s) | 941 |
| Csp6I | GTAC | 8 cut(s) | 833, 915, 1153, 1367, 1431, 1813, 2484, 2808 |
| CspAI | ACCGGT | 1 cut(s) | 1809 |
| CviQI | GTAC | 8 cut(s) | 833, 915, 1153, 1367, 1431, 1813, 2484, 2808 |
| DraI | TTTAAA | 2 cut(s) | 2392, 2557 |
| DraIII | CACNNNGTG | 2 cut(s) | 819, 1454 |
| Eam1104I | CTCTTC | 3 cut(s) | 1707, 2061, 2748 |
| EarI | CTCTTC | 3 cut(s) | 1707, 2061, 2748 |
| Eco130I | CCWWGG | 4 cut(s) | 2218, 2227, 2624, 2640 |
| Eco147I | AGGCCT | 1 cut(s) | 796 |
| Eco31I | GGTCTC | 2 cut(s) | 114, 684 |
| Eco32I | GATATC | 2 cut(s) | 1096, 2010 |
| Eco47I | GGWCC | 2 cut(s) | 1416, 2717 |
| Eco47III | AGCGCT | 3 cut(s) | 104, 1805, 2509 |
| Eco57I | CTGAAG | 4 cut(s) | 20, 912, 1839, 2220 |
| Eco81I | CCTNAGG | 1 cut(s) | 2061 |
| Eco91I | GGTNACC | 1 cut(s) | 2222 |
| EcoO65I | GGTNACC | 1 cut(s) | 2222 |
| EcoRI | GAATTC | 3 cut(s) | 228, 1702, 1876 |
| EcoRII | CCWGG | 5 cut(s) | 396, 936, 1238, 2150, 2415 |
| EcoRV | GATATC | 2 cut(s) | 1096, 2010 |
| EcoT14I | CCWWGG | 4 cut(s) | 2218, 2227, 2624, 2640 |
| EcoT22I | ATGCAT | 2 cut(s) | 1952, 2326 |
| ErhI | CCWWGG | 4 cut(s) | 2218, 2227, 2624, 2640 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 279, 311 |
| FaqI | GGGAC | 1 cut(s) | 918 |
| FauI | CCCGC | 1 cut(s) | 2583 |
| FauNDI | CATATG | 1 cut(s) | 744 |
| FbaI | TGATCA | 2 cut(s) | 1282, 1834 |
| FblI | GTMKAC | 2 cut(s) | 766, 1660 |
| Fnu4HI | GCNGC | 5 cut(s) | 740, 852, 1086, 1921, 2539 |
| Fsp4HI | GCNGC | 5 cut(s) | 740, 852, 1086, 1921, 2539 |
| FspBI | CTAG | 7 cut(s) | 798, 1373, 1902, 2025, 2085, 2219, 2805 |
| GlaI | GCGC | 4 cut(s) | 104, 897, 1805, 2509 |
| GluI | GCNGC | 5 cut(s) | 740, 852, 1086, 1921, 2539 |
| GsaI | CCCAGC | 2 cut(s) | 1343, 2538 |
| GsuI | CTGGAG | 4 cut(s) | 419, 968, 1945, 2399 |
| HaeII | RGCGCY | 4 cut(s) | 106, 899, 1807, 2511 |
| HaeIII | GGCC | 4 cut(s) | 752, 796, 871, 1338 |
| HapII | CCGG | 2 cut(s) | 1419, 1810 |
| HgaI | GACGC | 1 cut(s) | 941 |
| HhaI | GCGC | 4 cut(s) | 105, 898, 1806, 2510 |
| Hin1I | GRCGYC | 2 cut(s) | 363, 933 |
| Hin6I | GCGC | 4 cut(s) | 103, 896, 1804, 2508 |
| HinP1I | GCGC | 4 cut(s) | 103, 896, 1804, 2508 |
| HincII | GTYRAC | 2 cut(s) | 2082, 2200 |
| HindII | GTYRAC | 2 cut(s) | 2082, 2200 |
| HindIII | AAGCTT | 2 cut(s) | 1308, 1821 |
| HpaII | CCGG | 2 cut(s) | 1419, 1810 |
| HphI | GGTGA | 4 cut(s) | 1307, 1489, 1586, 2433 |
| Hpy99I | CGWCG | 2 cut(s) | 264, 267 |
| HpyCH4III | ACNGT | 2 cut(s) | 970, 2204 |
| HpyCH4IV | ACGT | 2 cut(s) | 259, 363 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 629, 868, 1139, 1189, 1466, 2281 |
| HpySE526I | ACGT | 2 cut(s) | 259, 363 |
| Hsp92I | GRCGYC | 2 cut(s) | 363, 933 |
| HspAI | GCGC | 4 cut(s) | 103, 896, 1804, 2508 |
| KpnI | GGTACC | 1 cut(s) | 918 |
| Ksp22I | TGATCA | 2 cut(s) | 1282, 1834 |
| LmnI | GCTCC | 5 cut(s) | 346, 1220, 1855, 2463, 2758 |
| Lsp1109I | GCAGC | 4 cut(s) | 751, 838, 1072, 2550 |
| LweI | GCATC | 7 cut(s) | 68, 865, 1007, 1049, 2311, 2333, 2587 |
| MaeI | CTAG | 7 cut(s) | 798, 1373, 1902, 2025, 2085, 2219, 2805 |
| MaeII | ACGT | 2 cut(s) | 259, 363 |
| MbiI | CCGCTC | 1 cut(s) | 1920 |
| MfeI | CAATTG | 1 cut(s) | 626 |
| MflI | RGATCY | 2 cut(s) | 31, 1329 |
| MhlI | GDGCHC | 1 cut(s) | 607 |
| MlyI | GAGTC | 4 cut(s) | 1026, 2642, 2773, 2829 |
| MmeI | TCCRAC | 2 cut(s) | 391, 1996 |
| Mph1103I | ATGCAT | 2 cut(s) | 1952, 2326 |
| MroXI | GAANNNNTTC | 2 cut(s) | 33, 1077 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1290 |
| MspA1I | CMGCKG | 2 cut(s) | 202, 851 |
| MspCI | CTTAAG | 1 cut(s) | 611 |
| MspI | CCGG | 2 cut(s) | 1419, 1810 |
| MspR9I | CCNGG | 6 cut(s) | 398, 938, 1240, 1420, 2152, 2417 |
| MunI | CAATTG | 1 cut(s) | 626 |
| Mva1269I | GAATGC | 1 cut(s) | 1530 |
| MvaI | CCWGG | 5 cut(s) | 398, 938, 1240, 2152, 2417 |
| MvnI | CGCG | 1 cut(s) | 2583 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 629, 868, 1139, 1189, 1466, 2281 |
| NciI | CCSGG | 1 cut(s) | 1420 |
| NcoI | CCATGG | 1 cut(s) | 2227 |
| NdeI | CATATG | 1 cut(s) | 744 |
| NlaIV | GGNNCC | 3 cut(s) | 916, 1385, 2017 |
| NmuCI | GTSAC | 3 cut(s) | 425, 1313, 2439 |
| NsiI | ATGCAT | 2 cut(s) | 1952, 2326 |
| NspI | RCATGY | 3 cut(s) | 176, 1599, 2052 |
| PceI | AGGCCT | 1 cut(s) | 796 |
| PciI | ACATGT | 1 cut(s) | 2048 |
| PctI | GAATGC | 1 cut(s) | 1530 |
| PdmI | GAANNNNTTC | 2 cut(s) | 33, 1077 |
| PfeI | GAWTC | 6 cut(s) | 662, 1256, 1589, 2095, 2561, 2710 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 245, 759 |
| PfoI | TCCNGGA | 2 cut(s) | 2150, 2415 |
| PinAI | ACCGGT | 1 cut(s) | 1809 |
| PkrI | GCNGC | 5 cut(s) | 741, 853, 1087, 1922, 2540 |
| PleI | GAGTC | 4 cut(s) | 1025, 2642, 2772, 2828 |
| PpsI | GAGTC | 4 cut(s) | 1025, 2642, 2772, 2828 |
| PscI | ACATGT | 1 cut(s) | 2048 |
| PshBI | ATTAAT | 1 cut(s) | 1937 |
| PsiI | TTATAA | 1 cut(s) | 567 |
| Psp6I | CCWGG | 5 cut(s) | 396, 936, 1238, 2150, 2415 |
| PspEI | GGTNACC | 1 cut(s) | 2222 |
| PspFI | CCCAGC | 2 cut(s) | 1339, 2534 |
| PspGI | CCWGG | 5 cut(s) | 396, 936, 1238, 2150, 2415 |
| PspN4I | GGNNCC | 3 cut(s) | 916, 1385, 2017 |
| PspPI | GGNCC | 3 cut(s) | 1337, 1416, 2717 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1455, 1487, 2215, 2247 |
| PstI | CTGCAG | 2 cut(s) | 1305, 1471 |
| PsuI | RGATCY | 2 cut(s) | 31, 1329 |
| PvuII | CAGCTG | 1 cut(s) | 851 |
| RsaI | GTAC | 8 cut(s) | 834, 916, 1154, 1368, 1432, 1814, 2485, 2809 |
| RsaNI | GTAC | 8 cut(s) | 833, 915, 1153, 1367, 1431, 1813, 2484, 2808 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1290 |
| SatI | GCNGC | 5 cut(s) | 740, 852, 1086, 1921, 2539 |
| Sau96I | GGNCC | 3 cut(s) | 1337, 1416, 2717 |
| ScaI | AGTACT | 2 cut(s) | 1368, 2809 |
| SchI | GAGTC | 4 cut(s) | 1026, 2642, 2773, 2829 |
| ScrFI | CCNGG | 6 cut(s) | 398, 938, 1240, 1420, 2152, 2417 |
| SduI | GDGCHC | 1 cut(s) | 607 |
| SfaNI | GCATC | 7 cut(s) | 68, 865, 1007, 1049, 2311, 2333, 2587 |
| SfcI | CTRYAG | 3 cut(s) | 1301, 1467, 2503 |
| SinI | GGWCC | 2 cut(s) | 1416, 2717 |
| SmiI | ATTTAAAT | 1 cut(s) | 2392 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1290 |
| SmlI | CTYRAG | 2 cut(s) | 611, 782 |
| SmoI | CTYRAG | 2 cut(s) | 611, 782 |
| SpeI | ACTAGT | 2 cut(s) | 2084, 2804 |
| SseBI | AGGCCT | 1 cut(s) | 796 |
| SsiI | CCGC | 4 cut(s) | 202, 1853, 1920, 2576 |
| SspMI | CTAG | 7 cut(s) | 798, 1373, 1902, 2025, 2085, 2219, 2805 |
| StuI | AGGCCT | 1 cut(s) | 796 |
| StyD4I | CCNGG | 6 cut(s) | 396, 936, 1238, 1418, 2150, 2415 |
| StyI | CCWWGG | 4 cut(s) | 2218, 2227, 2624, 2640 |
| SwaI | ATTTAAAT | 1 cut(s) | 2392 |
| TaaI | ACNGT | 2 cut(s) | 970, 2204 |
| TaiI | ACGT | 2 cut(s) | 262, 366 |
| TaqI | TCGA | 2 cut(s) | 1081, 1681 |
| TatI | WGTACW | 4 cut(s) | 1152, 1366, 2483, 2807 |
| TauI | GCSGC | 1 cut(s) | 1923 |
| TfiI | GAWTC | 6 cut(s) | 662, 1256, 1589, 2095, 2561, 2710 |
| TscAI | CASTG | 6 cut(s) | 284, 468, 475, 975, 1891, 2749 |
| TseFI | GTSAC | 3 cut(s) | 425, 1313, 2439 |
| TseI | GCWGC | 4 cut(s) | 739, 851, 1085, 2538 |
| Tsp45I | GTSAC | 3 cut(s) | 425, 1313, 2439 |
| TspGWI | ACGGA | 2 cut(s) | 2095, 2147 |
| TspRI | CASTG | 6 cut(s) | 284, 468, 475, 975, 1891, 2749 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 245, 759 |
| Vha464I | CTTAAG | 1 cut(s) | 611 |
| VneI | GTGCAC | 1 cut(s) | 603 |
| VpaK11BI | GGWCC | 2 cut(s) | 1416, 2717 |
| VspI | ATTAAT | 1 cut(s) | 1937 |
| XapI | RAATTY | 7 cut(s) | 228, 1644, 1702, 1876, 2037, 2337, 2704 |
| XbaI | TCTAGA | 1 cut(s) | 1901 |
| XceI | RCATGY | 3 cut(s) | 176, 1599, 2052 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2185 |
| XmaJI | CCTAGG | 1 cut(s) | 2218 |
| XmiI | GTMKAC | 2 cut(s) | 766, 1660 |
| XmnI | GAANNNNTTC | 2 cut(s) | 33, 1077 |
| XspI | CTAG | 7 cut(s) | 798, 1373, 1902, 2025, 2085, 2219, 2805 |
| ZraI | GACGTC | 1 cut(s) | 364 |
| ZrmI | AGTACT | 2 cut(s) | 1368, 2809 |
| Zsp2I | ATGCAT | 2 cut(s) | 1952, 2326 |