Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G61400 |
| fragaria_vesca | FvH4_5g14610 |
| prunus_persica | Prupe.5G197300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0181881 |
| rosa_laevigata | RLG00000005166 |
| rosa_multiflora | Rmu_co8156836.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00271670 |
| rosa_rugosa | Rorug06G0444800 |
| rosa_samantha | Rh7AG047000 Rh7BG046600 Rh7CG047100 Rh7DG046200 |
| rosa_wichuraiana | Rw7G003890 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 528, 1203 |
| AciI | CCGC | 2 cut(s) | 433, 725 |
| AcsI | RAATTY | 2 cut(s) | 1074, 1189 |
| AcuI | CTGAAG | 1 cut(s) | 176 |
| AfaI | GTAC | 4 cut(s) | 431, 787, 1123, 1367 |
| AjnI | CCWGG | 1 cut(s) | 248 |
| Alw21I | GWGCWC | 5 cut(s) | 22, 110, 150, 765, 1265 |
| Ama87I | CYCGRG | 1 cut(s) | 349 |
| AoxI | GGCC | 7 cut(s) | 175, 403, 618, 919, 1489, 1531, 1594 |
| ApaI | GGGCCC | 1 cut(s) | 179 |
| ApeKI | GCWGC | 4 cut(s) | 203, 868, 932, 1352 |
| ApoI | RAATTY | 2 cut(s) | 1074, 1189 |
| AseI | ATTAAT | 1 cut(s) | 1181 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1552 |
| AspLEI | GCGC | 1 cut(s) | 475 |
| AspS9I | GGNCC | 5 cut(s) | 175, 176, 403, 619, 1595 |
| AsuHPI | GGTGA | 6 cut(s) | 546, 656, 869, 1294, 1387, 1486 |
| AvaI | CYCGRG | 1 cut(s) | 349 |
| BaeGI | GKGCMC | 2 cut(s) | 179, 1014 |
| BanII | GRGCYC | 2 cut(s) | 150, 179 |
| BauI | CACGAG | 2 cut(s) | 103, 543 |
| BbsI | GAAGAC | 2 cut(s) | 313, 500 |
| Bbv12I | GWGCWC | 5 cut(s) | 22, 110, 150, 765, 1265 |
| BbvI | GCAGC | 4 cut(s) | 215, 880, 919, 1339 |
| BciT130I | CCWGG | 1 cut(s) | 250 |
| BfaI | CTAG | 4 cut(s) | 143, 558, 854, 1657 |
| BisI | GCNGC | 4 cut(s) | 204, 869, 933, 1353 |
| BlsI | GCNGC | 4 cut(s) | 205, 870, 934, 1354 |
| BmcAI | AGTACT | 1 cut(s) | 787 |
| Bme1390I | CCNGG | 1 cut(s) | 250 |
| BmeT110I | CYCGRG | 1 cut(s) | 349 |
| BmgT120I | GGNCC | 5 cut(s) | 175, 176, 403, 619, 1595 |
| BmiI | GGNNCC | 3 cut(s) | 177, 1290, 1597 |
| BmrFI | CCNGG | 1 cut(s) | 250 |
| BmsI | GCATC | 6 cut(s) | 316, 840, 892, 1312, 1467, 1477 |
| BpiI | GAAGAC | 2 cut(s) | 313, 500 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 343, 375, 1247, 1279 |
| BpmI | CTGGAG | 3 cut(s) | 345, 1502, 1598 |
| BpuEI | CTTGAG | 1 cut(s) | 1020 |
| Bsa29I | ATCGAT | 1 cut(s) | 1422 |
| Bse1I | ACTGG | 1 cut(s) | 1377 |
| Bse3DI | GCAATG | 2 cut(s) | 462, 709 |
| BseBI | CCWGG | 1 cut(s) | 250 |
| BseCI | ATCGAT | 1 cut(s) | 1422 |
| BseGI | GGATG | 3 cut(s) | 270, 1090, 1101 |
| BseMI | GCAATG | 2 cut(s) | 462, 709 |
| BseMII | CTCAG | 1 cut(s) | 917 |
| BseNI | ACTGG | 1 cut(s) | 1377 |
| BseSI | GKGCMC | 2 cut(s) | 179, 1014 |
| BseXI | GCAGC | 4 cut(s) | 215, 880, 919, 1339 |
| BseYI | CCCAGC | 1 cut(s) | 299 |
| BshFI | GGCC | 7 cut(s) | 177, 405, 620, 921, 1491, 1533, 1596 |
| BshVI | ATCGAT | 1 cut(s) | 1422 |
| BsiHKAI | GWGCWC | 5 cut(s) | 22, 110, 150, 765, 1265 |
| BsiHKCI | CYCGRG | 1 cut(s) | 349 |
| BsiSI | CCGG | 1 cut(s) | 1082 |
| BsnI | GGCC | 7 cut(s) | 177, 405, 620, 921, 1491, 1533, 1596 |
| BsoBI | CYCGRG | 1 cut(s) | 349 |
| Bsp120I | GGGCCC | 1 cut(s) | 175 |
| Bsp1286I | GDGCHC | 7 cut(s) | 22, 110, 150, 179, 765, 1014, 1265 |
| Bsp143I | GATC | 2 cut(s) | 672, 1419 |
| BspACI | CCGC | 2 cut(s) | 433, 725 |
| BspANI | GGCC | 7 cut(s) | 177, 405, 620, 921, 1491, 1533, 1596 |
| BspCNI | CTCAG | 1 cut(s) | 918 |
| BspDI | ATCGAT | 1 cut(s) | 1422 |
| BspLI | GGNNCC | 3 cut(s) | 177, 1290, 1597 |
| BspQI | GCTCTTC | 1 cut(s) | 155 |
| BsrDI | GCAATG | 2 cut(s) | 462, 709 |
| BsrI | ACTGG | 1 cut(s) | 1377 |
| BssMI | GATC | 2 cut(s) | 672, 1419 |
| BssSI | CACGAG | 2 cut(s) | 103, 543 |
| Bst2BI | CACGAG | 2 cut(s) | 103, 543 |
| Bst2UI | CCWGG | 1 cut(s) | 250 |
| Bst4CI | ACNGT | 6 cut(s) | 237, 667, 785, 1016, 1126, 1513 |
| Bst6I | CTCTTC | 4 cut(s) | 49, 82, 88, 155 |
| BstC8I | GCNNGC | 7 cut(s) | 453, 462, 828, 866, 1489, 1594, 1637 |
| BstDEI | CTNAG | 4 cut(s) | 340, 478, 926, 1652 |
| BstF5I | GGATG | 3 cut(s) | 270, 1090, 1101 |
| BstHHI | GCGC | 1 cut(s) | 475 |
| BstKTI | GATC | 2 cut(s) | 675, 1422 |
| BstMBI | GATC | 2 cut(s) | 672, 1419 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 300, 345, 457, 461, 470, 918, 1193, 1653 |
| BstNI | CCWGG | 1 cut(s) | 250 |
| BstNSI | RCATGY | 1 cut(s) | 1635 |
| BstSCI | CCNGG | 1 cut(s) | 248 |
| BstSLI | GKGCMC | 2 cut(s) | 179, 1014 |
| BstV1I | GCAGC | 4 cut(s) | 215, 880, 919, 1339 |
| BstV2I | GAAGAC | 2 cut(s) | 313, 500 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 774 |
| Bsu15I | ATCGAT | 1 cut(s) | 1422 |
| BsuRI | GGCC | 7 cut(s) | 177, 405, 620, 921, 1491, 1533, 1596 |
| BsuTUI | ATCGAT | 1 cut(s) | 1422 |
| BtsCI | GGATG | 3 cut(s) | 270, 1090, 1101 |
| BtsIMutI | CAGTG | 2 cut(s) | 1012, 1370 |
| Cac8I | GCNNGC | 7 cut(s) | 453, 462, 828, 866, 1489, 1594, 1637 |
| CfoI | GCGC | 1 cut(s) | 475 |
| Cfr13I | GGNCC | 5 cut(s) | 175, 176, 403, 619, 1595 |
| ClaI | ATCGAT | 1 cut(s) | 1422 |
| Csp6I | GTAC | 4 cut(s) | 430, 786, 1122, 1366 |
| CviAII | CATG | 4 cut(s) | 215, 470, 1345, 1632 |
| CviQI | GTAC | 4 cut(s) | 430, 786, 1122, 1366 |
| DdeI | CTNAG | 4 cut(s) | 340, 478, 926, 1652 |
| DpnI | GATC | 2 cut(s) | 674, 1421 |
| DpnII | GATC | 2 cut(s) | 672, 1419 |
| DraI | TTTAAA | 1 cut(s) | 1435 |
| Eam1104I | CTCTTC | 4 cut(s) | 49, 82, 88, 155 |
| EarI | CTCTTC | 4 cut(s) | 49, 82, 88, 155 |
| Ecl136II | GAGCTC | 1 cut(s) | 148 |
| Eco147I | AGGCCT | 1 cut(s) | 1491 |
| Eco24I | GRGCYC | 2 cut(s) | 150, 179 |
| Eco53kI | GAGCTC | 1 cut(s) | 148 |
| Eco57I | CTGAAG | 1 cut(s) | 176 |
| Eco88I | CYCGRG | 1 cut(s) | 349 |
| EcoICRI | GAGCTC | 1 cut(s) | 148 |
| EcoRI | GAATTC | 1 cut(s) | 1189 |
| EcoRII | CCWGG | 1 cut(s) | 248 |
| EcoT22I | ATGCAT | 1 cut(s) | 1327 |
| EcoT38I | GRGCYC | 2 cut(s) | 150, 179 |
| FaeI | CATG | 4 cut(s) | 218, 473, 1348, 1635 |
| FatI | CATG | 4 cut(s) | 214, 469, 1344, 1631 |
| FauNDI | CATATG | 2 cut(s) | 571, 1641 |
| Fnu4HI | GCNGC | 4 cut(s) | 204, 869, 933, 1353 |
| FokI | GGATG | 3 cut(s) | 257, 1088, 1097 |
| FriOI | GRGCYC | 2 cut(s) | 150, 179 |
| Fsp4HI | GCNGC | 4 cut(s) | 204, 869, 933, 1353 |
| FspBI | CTAG | 4 cut(s) | 143, 558, 854, 1657 |
| GlaI | GCGC | 1 cut(s) | 474 |
| GluI | GCNGC | 4 cut(s) | 204, 869, 933, 1353 |
| GsaI | CCCAGC | 1 cut(s) | 303 |
| GsuI | CTGGAG | 3 cut(s) | 345, 1502, 1598 |
| HaeIII | GGCC | 7 cut(s) | 177, 405, 620, 921, 1491, 1533, 1596 |
| HapII | CCGG | 1 cut(s) | 1082 |
| HhaI | GCGC | 1 cut(s) | 475 |
| Hin1II | CATG | 4 cut(s) | 218, 473, 1348, 1635 |
| Hin6I | GCGC | 1 cut(s) | 473 |
| HinP1I | GCGC | 1 cut(s) | 473 |
| HindIII | AAGCTT | 1 cut(s) | 8 |
| HinfI | GANTC | 2 cut(s) | 187, 1273 |
| HpaII | CCGG | 1 cut(s) | 1082 |
| HphI | GGTGA | 6 cut(s) | 546, 656, 869, 1294, 1387, 1486 |
| Hpy166II | GTNNAC | 3 cut(s) | 430, 777, 1122 |
| Hpy188I | TCNGA | 3 cut(s) | 397, 792, 1057 |
| Hpy188III | TCNNGA | 5 cut(s) | 103, 362, 1090, 1472, 1577 |
| Hpy8I | GTNNAC | 3 cut(s) | 430, 777, 1122 |
| HpyAV | CCTTC | 6 cut(s) | 290, 596, 610, 1240, 1315, 1542 |
| HpyCH4III | ACNGT | 6 cut(s) | 237, 667, 785, 1016, 1126, 1513 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 300, 345, 457, 461, 470, 918, 1193, 1653 |
| HpyF3I | CTNAG | 4 cut(s) | 340, 478, 926, 1652 |
| Hsp92II | CATG | 4 cut(s) | 218, 473, 1348, 1635 |
| HspAI | GCGC | 1 cut(s) | 473 |
| Kzo9I | GATC | 2 cut(s) | 672, 1419 |
| LguI | GCTCTTC | 1 cut(s) | 155 |
| LmnI | GCTCC | 2 cut(s) | 768, 939 |
| Lsp1109I | GCAGC | 4 cut(s) | 215, 880, 919, 1339 |
| LweI | GCATC | 6 cut(s) | 316, 840, 892, 1312, 1467, 1477 |
| MaeI | CTAG | 4 cut(s) | 143, 558, 854, 1657 |
| MaeIII | GTNAC | 5 cut(s) | 311, 552, 565, 1090, 1402 |
| MalI | GATC | 2 cut(s) | 674, 1421 |
| MboI | GATC | 2 cut(s) | 672, 1419 |
| MhlI | GDGCHC | 7 cut(s) | 22, 110, 150, 179, 765, 1014, 1265 |
| Mph1103I | ATGCAT | 1 cut(s) | 1327 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1552 |
| MslI | CAYNNNNRTG | 1 cut(s) | 443 |
| MspI | CCGG | 1 cut(s) | 1082 |
| MspR9I | CCNGG | 1 cut(s) | 250 |
| MvaI | CCWGG | 1 cut(s) | 250 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 300, 345, 457, 461, 470, 918, 1193, 1653 |
| NdeI | CATATG | 2 cut(s) | 571, 1641 |
| NdeII | GATC | 2 cut(s) | 672, 1419 |
| NlaIII | CATG | 4 cut(s) | 218, 473, 1348, 1635 |
| NlaIV | GGNNCC | 3 cut(s) | 177, 1290, 1597 |
| NmuCI | GTSAC | 3 cut(s) | 311, 552, 1090 |
| NsiI | ATGCAT | 1 cut(s) | 1327 |
| NspI | RCATGY | 1 cut(s) | 1635 |
| PaeR7I | CTCGAG | 1 cut(s) | 349 |
| PceI | AGGCCT | 1 cut(s) | 1491 |
| PciSI | GCTCTTC | 1 cut(s) | 155 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1552 |
| PfeI | GAWTC | 2 cut(s) | 187, 1273 |
| PkrI | GCNGC | 4 cut(s) | 205, 870, 934, 1354 |
| PshBI | ATTAAT | 1 cut(s) | 1181 |
| PsiI | TTATAA | 2 cut(s) | 528, 1203 |
| Psp124BI | GAGCTC | 1 cut(s) | 150 |
| Psp6I | CCWGG | 1 cut(s) | 248 |
| PspFI | CCCAGC | 1 cut(s) | 299 |
| PspGI | CCWGG | 1 cut(s) | 248 |
| PspN4I | GGNNCC | 3 cut(s) | 177, 1290, 1597 |
| PspOMI | GGGCCC | 1 cut(s) | 175 |
| PspPI | GGNCC | 5 cut(s) | 175, 176, 403, 619, 1595 |
| PspXI | VCTCGAGB | 1 cut(s) | 349 |
| RsaI | GTAC | 4 cut(s) | 431, 787, 1123, 1367 |
| RsaNI | GTAC | 4 cut(s) | 430, 786, 1122, 1366 |
| RseI | CAYNNNNRTG | 1 cut(s) | 443 |
| SacI | GAGCTC | 1 cut(s) | 150 |
| SapI | GCTCTTC | 1 cut(s) | 155 |
| SatI | GCNGC | 4 cut(s) | 204, 869, 933, 1353 |
| Sau3AI | GATC | 2 cut(s) | 672, 1419 |
| Sau96I | GGNCC | 5 cut(s) | 175, 176, 403, 619, 1595 |
| ScaI | AGTACT | 1 cut(s) | 787 |
| ScrFI | CCNGG | 1 cut(s) | 250 |
| SduI | GDGCHC | 7 cut(s) | 22, 110, 150, 179, 765, 1014, 1265 |
| SfaNI | GCATC | 6 cut(s) | 316, 840, 892, 1312, 1467, 1477 |
| Sfr274I | CTCGAG | 1 cut(s) | 349 |
| SlaI | CTCGAG | 1 cut(s) | 349 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 443 |
| SmlI | CTYRAG | 2 cut(s) | 349, 1035 |
| SmoI | CTYRAG | 2 cut(s) | 349, 1035 |
| SseBI | AGGCCT | 1 cut(s) | 1491 |
| SsiI | CCGC | 2 cut(s) | 433, 725 |
| SspI | AATATT | 2 cut(s) | 157, 820 |
| SspMI | CTAG | 4 cut(s) | 143, 558, 854, 1657 |
| SstI | GAGCTC | 1 cut(s) | 150 |
| StuI | AGGCCT | 1 cut(s) | 1491 |
| StyD4I | CCNGG | 1 cut(s) | 248 |
| TaaI | ACNGT | 6 cut(s) | 237, 667, 785, 1016, 1126, 1513 |
| TaqI | TCGA | 3 cut(s) | 324, 350, 1422 |
| TatI | WGTACW | 3 cut(s) | 785, 1121, 1365 |
| TfiI | GAWTC | 2 cut(s) | 187, 1273 |
| TscAI | CASTG | 2 cut(s) | 1019, 1377 |
| TseFI | GTSAC | 3 cut(s) | 311, 552, 1090 |
| TseI | GCWGC | 4 cut(s) | 203, 868, 932, 1352 |
| Tsp45I | GTSAC | 3 cut(s) | 311, 552, 1090 |
| TspDTI | ATGAA | 4 cut(s) | 78, 546, 651, 809 |
| TspRI | CASTG | 2 cut(s) | 1019, 1377 |
| VspI | ATTAAT | 1 cut(s) | 1181 |
| XapI | RAATTY | 2 cut(s) | 1074, 1189 |
| XceI | RCATGY | 1 cut(s) | 1635 |
| XhoI | CTCGAG | 1 cut(s) | 349 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1552 |
| XspI | CTAG | 4 cut(s) | 143, 558, 854, 1657 |
| ZrmI | AGTACT | 1 cut(s) | 787 |
| Zsp2I | ATGCAT | 1 cut(s) | 1327 |