Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017144

Physical Location & Seq

Genomic Coordinates Forward (+)

65576404 .. 65578329

Gene Structure 1926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1926 bp

ATGTTGAAGCTTTCCCGTCCGAACCGGACACTCTTCGCCAGAGCATTCGGTTCATCGTCGTCGTCGTCTTCTTCTTCGCCGGCCGATTTCACCAGCGCTATACTAAATTGCAGAAATCCTACAGAAGCGTTTGAACTCTTCAATTCGGCGTCGAAACGAGTCGGCGCAAGGAAGGATCTCCAGCTTCATTCAGCGATTACTCATGTGTTGGTCAGAGCCAAACTATATATTAAAGCCAGGTGCTTGATAAAAGACTTGATACTAGATCTTCAGAAGTCCTGCAAATCCCGCCGTGCCTGTGACTTGGTTTACAATGCACTTAGCCGTTTGGAGAGGTCTGGATTCTGTGCTCGGAATGTTTTTGGAGTTTTGATCATTGCGTTATCTGAGATGGGTCTTGTTGAAGAAGCTTTGCGGGTGTATAGCAGCATTGGGGTGTTGCCTGCAACCCAGGCTTGTAATGCGCTCTTGGATGGGTTGGTGAAGATGGGTCAGCTTGATTCGATGTGGGAGCTTTATAATGATATGGACTCTCGTGGATTAAGACCTAGTTGTGTTACATATGGGGTGTTAATCGAGGGTTGTTGTAAGAAAGGCGATCTCGTAATTGCACGTAAGGTGTTCGATGAAATGCCTGAGAGAGGGATTGAAAGGACAGTTGTGGTGTATACGTCTCTTATTCGTGGCCTGTGCAATGAGGGGAGGATGGTGGAAGCTGAAAGCATTTTTCGGACGATGAGGAGAGATGGTGTGTTCCCAAATCTGTGGACATACAATTGTCTGATGGATGGATATTGCAAGGTGGCTAATGTTAAACAAGCCCTTGTGTTGTACTCGAACTTGCTAGGCGATGGCTTGCAGCCGAATGTTGTGACGTTTGGTATTTTAGTTGATGCATTTTGCAAAGTAGGTGAACTGATGGCTGCGAGGAGCGTTTTAGCGTGCATGGTTAAGTTTGGTGTTGCGCCTAATACGTTTGTGTACAATGGTTTGATTGACGGGCATTGTAAGGTAGAAGATGTTTCGGAAGCAATGGATTTGAAATTGGAGATGGAAAAGTATGGTGTTCTTCCGGATGTGTTCACTTACAGCATACTAATTAAGGGTCTATGTTCTGTTTGTAGAGTGGAAGAAGCGTATCGGTTGTTGCAAAACATGAAGAAGGAGGGAGTTGCTGCAAATGCTGTTACGTACAATTCACTAATCGATGGGTATTGTAAAGATCGCGATATGGAGAAGGCTTTGGAGGTGTGTTCTGAAATGACCAAAATTGGTATAGAACCAAATGTCATCACCTTCTCTACTTTGATCGATGCTTATTGCAAGATGGGGAACATGGAAGCTGCTATGGGTTTGTACTCGGAAATGGTAGTTAAAGGCCTTCTGCCTGATATAGTAGCTTACACAGCTTTGATTGATGGCCATTTTAAAACCGGGAACGTGAAAGAGGCTCATCGCCTGCACAAAGAGATGTTGGAGGCAGGCCTCACGCCCAATGTTTTCACTCTTAGTTGCTTGGTAGATGGCCTTGGTAAAAATGGAAAGAGTTCTGATGCGATCAACCTCTTTTCGGAGAAAACTGAAGTCAGTTACAATACAGATGAAACCAAGGAAATGGATGGCGACTTCTGTTCCCCAAATCATGTGACTTATACAGCTTTAATTCAGGGTCTGTATGTAGACAGCCGGATTGTCGAGGCAACCAAGTTCTTTTTGGATATGAGAGTCAGTGGTTTGAGACCAGATGCATTCACTTACATTGTCATGTTAAAGGGCCACTTCCAAGCGAAGCATACGGTTGGCGTGATGATGCTGCATGCAGATATGATGAAGACGGGTATCATTCCCAGTATAGATATACGTCCGGTGTTATGTAGGGCTTACCAAGAAATTGGTGAACTAAAATCAGCAGCTAAGTTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

642

Amino Acids

70.96

Weight (kDa)

7.4

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	150 - 197	7.3e-15	PPR repeat family
PPR_long	PF17177	167 - 305	4.5e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	172 - 223	5.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	179 - 211	6.1e-10	PPR repeat
PPR_2	PF13041	186 - 232	4.2e-13	PPR repeat family
PPR	PF01535	186 - 216	1.2e-07	PPR repeat
PPR_3	PF13812	206 - 265	8.1e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	214 - 247	3.6e-09	PPR repeat
PPR_2	PF13041	219 - 267	5e-16	PPR repeat family
PPR	PF01535	221 - 251	4.9e-08	PPR repeat
PPR_1	PF12854	249 - 277	3.4e-07	PPR repeat
PPR_2	PF13041	253 - 302	8e-14	PPR repeat family
PPR_3	PF13812	280 - 332	5.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	284 - 316	4.5e-08	PPR repeat
PPR_2	PF13041	288 - 337	4.5e-11	PPR repeat family
PPR_1	PF12854	320 - 352	1.6e-07	PPR repeat
PPR_2	PF13041	323 - 371	1.1e-17	PPR repeat family
PPR_1	PF12854	355 - 387	2.3e-10	PPR repeat
PPR	PF01535	361 - 391	8e-06	PPR repeat
PPR_2	PF13041	367 - 407	1.4e-12	PPR repeat family
PPR_long	PF17177	376 - 486	5.1e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	381 - 442	5.9e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	390 - 422	5.5e-11	PPR repeat
PPR_2	PF13041	394 - 442	4.5e-19	PPR repeat family
PPR	PF01535	396 - 426	9e-10	PPR repeat
PPR_1	PF12854	425 - 457	1.1e-11	PPR repeat
PPR_2	PF13041	428 - 474	4.8e-15	PPR repeat family
PPR	PF01535	431 - 461	1.8e-08	PPR repeat
PPR_3	PF13812	453 - 512	2.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	459 - 491	9.3e-08	PPR repeat
PPR_2	PF13041	463 - 512	8.3e-15	PPR repeat family
PPR	PF01535	466 - 496	8.6e-07	PPR repeat
PPR_1	PF12854	495 - 525	1.6e-06	PPR repeat
PPR_2	PF13041	546 - 593	3e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61400
fragaria_vesca	FvH4_5g14610
prunus_persica	Prupe.5G197300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181881
rosa_laevigata	RLG00000005166
rosa_multiflora	Rmu_co8156836.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271670
rosa_rugosa	Rorug06G0444800
rosa_samantha	Rh7AG047000 Rh7BG046600 Rh7CG047100 Rh7DG046200
rosa_wichuraiana	Rw7G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AccI	GTMKAC	2 cut(s)	668, 1680
AccII	CGCG	1 cut(s)	1227
AccIII	TCCGGA	1 cut(s)	1072
AciI	CCGC	2 cut(s)	289, 415
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	2 cut(s)	81, 1420
AcuI	CTGAAG	2 cut(s)	254, 1602
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	4 cut(s)	833, 983, 1193, 1358
AfeI	AGCGCT	1 cut(s)	97
AfiI	CCNNNNNNNGG	2 cut(s)	641, 1570
AgsI	TTSAA	6 cut(s)	7, 134, 142, 404, 650, 1042
AjnI	CCWGG	2 cut(s)	236, 450
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	678, 1732
AlwI	GGATC	1 cut(s)	183
AlwNI	CAGNNNCTG	1 cut(s)	1672
Aor13HI	TCCGGA	1 cut(s)	1072
Aor51HI	AGCGCT	1 cut(s)	97
AoxI	GGCC	7 cut(s)	81, 685, 1378, 1420, 1483, 1525, 1774
ApeKI	GCWGC	7 cut(s)	426, 859, 923, 1175, 1343, 1813, 1910
Asp700I	GAANNNNTTC	1 cut(s)	1546
AspLEI	GCGC	4 cut(s)	98, 167, 466, 967
AspS9I	GGNCC	1 cut(s)	1774
AsuC2I	CCSGG	1 cut(s)	1435
AsuHPI	GGTGA	5 cut(s)	82, 493, 923, 1285, 1907
BalI	TGGCCA	1 cut(s)	1422
BauI	CACGAG	1 cut(s)	534
BbsI	GAAGAC	2 cut(s)	60, 1838
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	7 cut(s)	438, 871, 910, 1162, 1330, 1800, 1922
BceAI	ACGGC	2 cut(s)	276, 309
BciT130I	CCWGG	2 cut(s)	238, 452
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	1435
BcoDI	GTCTC	2 cut(s)	678, 1732
BfaI	CTAG	3 cut(s)	263, 549, 845
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	99
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	7 cut(s)	427, 860, 924, 1176, 1344, 1814, 1911
BlsI	GCNGC	7 cut(s)	428, 861, 925, 1177, 1345, 1815, 1912
Bme1390I	CCNGG	3 cut(s)	238, 452, 1435
BmgT120I	GGNCC	1 cut(s)	1774
BmrFI	CCNGG	3 cut(s)	238, 452, 1435
BmrI	ACTGGG	1 cut(s)	1842
BmsI	GCATC	5 cut(s)	883, 1303, 1543, 1735, 1800
BmuI	ACTGGG	1 cut(s)	1842
BpiI	GAAGAC	2 cut(s)	60, 1838
BpmI	CTGGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	1435
Bsa29I	ATCGAT	2 cut(s)	1206, 1311
BsaAI	YACGTR	2 cut(s)	614, 1191
BsaHI	GRCGYC	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	1732
BsaJI	CCNNGG	3 cut(s)	450, 1528, 1608
BsaWI	WCCGGW	3 cut(s)	24, 1072, 1864
BsaXI	ACNNNNNCTCC	2 cut(s)	733, 763
Bsc4I	CCNNNNNNNGG	2 cut(s)	641, 1570
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	1848
Bse3DI	GCAATG	3 cut(s)	375, 700, 1038
BseAI	TCCGGA	1 cut(s)	1072
BseBI	CCWGG	2 cut(s)	238, 452
BseCI	ATCGAT	2 cut(s)	1206, 1311
BseDI	CCNNGG	3 cut(s)	450, 1528, 1608
BseGI	GGATG	5 cut(s)	478, 711, 793, 1081, 1624
BseLI	CCNNNNNNNGG	2 cut(s)	641, 1570
BseMI	GCAATG	3 cut(s)	375, 700, 1038
BseMII	CTCAG	2 cut(s)	378, 627
BseNI	ACTGG	1 cut(s)	1848
BseRI	GAGGAG	2 cut(s)	754, 943
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	7 cut(s)	438, 871, 910, 1162, 1330, 1800, 1922
BsgI	GTGCAG	1 cut(s)	1445
Bsh1236I	CGCG	1 cut(s)	1227
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	7 cut(s)	83, 687, 1380, 1422, 1485, 1527, 1776
BshVI	ATCGAT	2 cut(s)	1206, 1311
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	6 cut(s)	25, 80, 1073, 1434, 1687, 1865
BslI	CCNNNNNNNGG	2 cut(s)	641, 1570
BsmAI	GTCTC	2 cut(s)	678, 1732
BsmBI	CGTCTC	1 cut(s)	678
BsmI	GAATGC	2 cut(s)	44, 1748
BsnI	GGCC	7 cut(s)	83, 687, 1380, 1422, 1485, 1527, 1776
Bso31I	GGTCTC	1 cut(s)	1732
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp13I	TCCGGA	1 cut(s)	1072
Bsp1407I	TGTACA	1 cut(s)	981
Bsp143I	GATC	7 cut(s)	175, 265, 372, 598, 1222, 1308, 1557
Bsp68I	TCGCGA	1 cut(s)	1227
BspACI	CCGC	2 cut(s)	289, 415
BspANI	GGCC	7 cut(s)	83, 687, 1380, 1422, 1485, 1527, 1776
BspCNI	CTCAG	2 cut(s)	379, 628
BspDI	ATCGAT	2 cut(s)	1206, 1311
BspEI	TCCGGA	1 cut(s)	1072
BspFNI	CGCG	1 cut(s)	1227
BspPI	GGATC	1 cut(s)	183
BspTNI	GGTCTC	1 cut(s)	1732
BsrDI	GCAATG	3 cut(s)	375, 700, 1038
BsrFI	RCCGGY	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	981
BsrI	ACTGG	1 cut(s)	1848
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	450, 1528, 1608
BssMI	GATC	7 cut(s)	175, 265, 372, 598, 1222, 1308, 1557
BssNAI	GTATAC	1 cut(s)	669
BssNI	GRCGYC	1 cut(s)	149
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	2 cut(s)	1528, 1608
Bst1107I	GTATAC	1 cut(s)	669
Bst2BI	CACGAG	1 cut(s)	534
Bst2UI	CCWGG	2 cut(s)	238, 452
Bst4CI	ACNGT	2 cut(s)	658, 1798
Bst6I	CTCTTC	2 cut(s)	38, 143
BstACI	GRCGYC	1 cut(s)	149
BstAUI	TGTACA	1 cut(s)	981
BstBAI	YACGTR	2 cut(s)	614, 1191
BstC8I	GCNNGC	7 cut(s)	81, 444, 857, 943, 1460, 1483, 1818
BstDEI	CTNAG	5 cut(s)	320, 387, 636, 1508, 1914
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	5 cut(s)	478, 711, 793, 1081, 1624
BstFNI	CGCG	1 cut(s)	1227
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	4 cut(s)	98, 167, 466, 967
BstKTI	GATC	7 cut(s)	178, 268, 375, 601, 1225, 1311, 1560
BstMAI	GTCTC	2 cut(s)	678, 1732
BstMBI	GATC	7 cut(s)	175, 265, 372, 598, 1222, 1308, 1557
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	5 cut(s)	288, 452, 461, 1181, 1406
BstNI	CCWGG	2 cut(s)	238, 452
BstNSI	RCATGY	1 cut(s)	1820
BstSCI	CCNGG	3 cut(s)	236, 450, 1433
BstSFI	CTRYAG	1 cut(s)	120
BstSNI	TACGTA	1 cut(s)	1191
BstUI	CGCG	1 cut(s)	1227
BstV1I	GCAGC	7 cut(s)	438, 871, 910, 1162, 1330, 1800, 1922
BstV2I	GAAGAC	2 cut(s)	60, 1838
BstX2I	RGATCY	2 cut(s)	175, 265
BstXI	CCANNNNNNTGG	3 cut(s)	765, 1615, 1892
BstYI	RGATCY	2 cut(s)	175, 265
BstZ17I	GTATAC	1 cut(s)	669
BstZI	CGGCCG	1 cut(s)	81
Bsu15I	ATCGAT	2 cut(s)	1206, 1311
BsuRI	GGCC	7 cut(s)	83, 687, 1380, 1422, 1485, 1527, 1776
BsuTUI	ATCGAT	2 cut(s)	1206, 1311
BtgZI	GCGATG	2 cut(s)	864, 1439
BtsCI	GGATG	5 cut(s)	478, 711, 793, 1081, 1624
BtsIMutI	CAGTG	1 cut(s)	1735
BtuMI	TCGCGA	1 cut(s)	1227
Cac8I	GCNNGC	7 cut(s)	81, 444, 857, 943, 1460, 1483, 1818
CaiI	CAGNNNCTG	1 cut(s)	1672
CfoI	GCGC	4 cut(s)	98, 167, 466, 967
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	1774
ClaI	ATCGAT	2 cut(s)	1206, 1311
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	4 cut(s)	832, 982, 1192, 1357
CviAII	CATG	7 cut(s)	203, 946, 1156, 1336, 1643, 1765, 1817
CviQI	GTAC	4 cut(s)	832, 982, 1192, 1357
DdeI	CTNAG	5 cut(s)	320, 387, 636, 1508, 1914
DpnI	GATC	7 cut(s)	177, 267, 374, 600, 1224, 1310, 1559
DpnII	GATC	7 cut(s)	175, 265, 372, 598, 1222, 1308, 1557
DraI	TTTAAA	1 cut(s)	1429
EaeI	YGGCCR	2 cut(s)	81, 1420
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	38, 143
EarI	CTCTTC	2 cut(s)	38, 143
EclXI	CGGCCG	1 cut(s)	81
Eco105I	TACGTA	1 cut(s)	1191
Eco130I	CCWWGG	2 cut(s)	1528, 1608
Eco147I	AGGCCT	2 cut(s)	1380, 1485
Eco31I	GGTCTC	1 cut(s)	1732
Eco47III	AGCGCT	1 cut(s)	97
Eco52I	CGGCCG	1 cut(s)	81
Eco57I	CTGAAG	2 cut(s)	254, 1602
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoRII	CCWGG	2 cut(s)	236, 450
EcoT14I	CCWWGG	2 cut(s)	1528, 1608
EcoT22I	ATGCAT	2 cut(s)	898, 1750
ErhI	CCWWGG	2 cut(s)	1528, 1608
Esp3I	CGTCTC	1 cut(s)	678
FaeI	CATG	7 cut(s)	206, 949, 1159, 1339, 1646, 1768, 1820
FalI	AAGNNNNNCTT	2 cut(s)	1763, 1795
FatI	CATG	7 cut(s)	202, 945, 1155, 1335, 1642, 1764, 1816
FauI	CCCGC	2 cut(s)	296, 408
FauNDI	CATATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	372
FblI	GTMKAC	2 cut(s)	668, 1680
Fnu4HI	GCNGC	7 cut(s)	427, 860, 924, 1176, 1344, 1814, 1911
FokI	GGATG	5 cut(s)	485, 718, 800, 1088, 1631
Fsp4HI	GCNGC	7 cut(s)	427, 860, 924, 1176, 1344, 1814, 1911
FspBI	CTAG	3 cut(s)	263, 549, 845
GlaI	GCGC	4 cut(s)	97, 166, 465, 966
GluI	GCNGC	7 cut(s)	427, 860, 924, 1176, 1344, 1814, 1911
GsuI	CTGGAG	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	7 cut(s)	83, 687, 1380, 1422, 1485, 1527, 1776
HapII	CCGG	6 cut(s)	25, 80, 1073, 1434, 1687, 1865
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	4 cut(s)	98, 167, 466, 967
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	7 cut(s)	206, 949, 1159, 1339, 1646, 1768, 1820
Hin6I	GCGC	4 cut(s)	96, 165, 464, 965
HinP1I	GCGC	4 cut(s)	96, 165, 464, 965
HindIII	AAGCTT	2 cut(s)	8, 408
HinfI	GANTC	5 cut(s)	159, 342, 500, 530, 1725
HpaII	CCGG	6 cut(s)	25, 80, 1073, 1434, 1687, 1865
HphI	GGTGA	5 cut(s)	82, 493, 923, 1285, 1907
Hpy166II	GTNNAC	8 cut(s)	310, 669, 768, 914, 982, 1083, 1681, 1898
Hpy188III	TCNNGA	3 cut(s)	339, 1073, 1226
Hpy8I	GTNNAC	8 cut(s)	310, 669, 768, 914, 982, 1083, 1681, 1898
Hpy99I	CGWCG	4 cut(s)	61, 64, 67, 154
HpyAV	CCTTC	5 cut(s)	166, 1156, 1231, 1306, 1391
HpyCH4III	ACNGT	2 cut(s)	658, 1798
HpyCH4IV	ACGT	7 cut(s)	613, 671, 875, 974, 1190, 1440, 1861
HpyF10VI	GCNNNNNNNGC	5 cut(s)	288, 452, 461, 1181, 1406
HpyF3I	CTNAG	5 cut(s)	320, 387, 636, 1508, 1914
HpySE526I	ACGT	7 cut(s)	613, 671, 875, 974, 1190, 1440, 1861
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	7 cut(s)	206, 949, 1159, 1339, 1646, 1768, 1820
HspAI	GCGC	4 cut(s)	96, 165, 464, 965
Kpn2I	TCCGGA	1 cut(s)	1072
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	7 cut(s)	175, 265, 372, 598, 1222, 1308, 1557
LmnI	GCTCC	2 cut(s)	511, 930
Lsp1109I	GCAGC	7 cut(s)	438, 871, 910, 1162, 1330, 1800, 1922
LweI	GCATC	5 cut(s)	883, 1303, 1543, 1735, 1800
MaeI	CTAG	3 cut(s)	263, 549, 845
MaeII	ACGT	7 cut(s)	613, 671, 875, 974, 1190, 1440, 1861
MaeIII	GTNAC	6 cut(s)	299, 556, 871, 1186, 1589, 1645
MalI	GATC	7 cut(s)	177, 267, 374, 600, 1224, 1310, 1559
MboI	GATC	7 cut(s)	175, 265, 372, 598, 1222, 1308, 1557
MfeI	CAATTG	1 cut(s)	775
MflI	RGATCY	2 cut(s)	175, 265
MhlI	GDGCHC	1 cut(s)	352
MlsI	TGGCCA	1 cut(s)	1422
MluNI	TGGCCA	1 cut(s)	1422
MlyI	GAGTC	3 cut(s)	168, 524, 1734
MmeI	TCCRAC	1 cut(s)	1455
Mox20I	TGGCCA	1 cut(s)	1422
Mph1103I	ATGCAT	2 cut(s)	898, 1750
MroI	TCCGGA	1 cut(s)	1072
MroNI	GCCGGC	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	1546
MscI	TGGCCA	1 cut(s)	1422
MslI	CAYNNNNRTG	2 cut(s)	434, 1763
Msp20I	TGGCCA	1 cut(s)	1422
MspI	CCGG	6 cut(s)	25, 80, 1073, 1434, 1687, 1865
MspR9I	CCNGG	3 cut(s)	238, 452, 1435
MunI	CAATTG	1 cut(s)	775
Mva1269I	GAATGC	2 cut(s)	44, 1748
MvaI	CCWGG	2 cut(s)	238, 452
MvnI	CGCG	1 cut(s)	1227
MwoI	GCNNNNNNNGC	5 cut(s)	288, 452, 461, 1181, 1406
NaeI	GCCGGC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	1435
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	7 cut(s)	175, 265, 372, 598, 1222, 1308, 1557
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	7 cut(s)	206, 949, 1159, 1339, 1646, 1768, 1820
NmuCI	GTSAC	3 cut(s)	299, 871, 1645
NruI	TCGCGA	1 cut(s)	1227
NsiI	ATGCAT	2 cut(s)	898, 1750
NspI	RCATGY	1 cut(s)	1820
PaeI	GCATGC	1 cut(s)	1820
PceI	AGGCCT	2 cut(s)	1380, 1485
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PctI	GAATGC	2 cut(s)	44, 1748
PdiI	GCCGGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	1546
PfeI	GAWTC	2 cut(s)	342, 500
PkrI	GCNGC	7 cut(s)	428, 861, 925, 1177, 1345, 1815, 1912
PleI	GAGTC	3 cut(s)	167, 524, 1733
PpsI	GAGTC	3 cut(s)	167, 524, 1733
Ppu21I	YACGTR	2 cut(s)	614, 1191
PsiI	TTATAA	1 cut(s)	519
Psp6I	CCWGG	2 cut(s)	236, 450
PspGI	CCWGG	2 cut(s)	236, 450
PspPI	GGNCC	1 cut(s)	1774
PstNI	CAGNNNCTG	1 cut(s)	1672
PsuI	RGATCY	2 cut(s)	175, 265
RruI	TCGCGA	1 cut(s)	1227
RsaI	GTAC	4 cut(s)	833, 983, 1193, 1358
RsaNI	GTAC	4 cut(s)	832, 982, 1192, 1357
RseI	CAYNNNNRTG	2 cut(s)	434, 1763
SatI	GCNGC	7 cut(s)	427, 860, 924, 1176, 1344, 1814, 1911
Sau3AI	GATC	7 cut(s)	175, 265, 372, 598, 1222, 1308, 1557
Sau96I	GGNCC	1 cut(s)	1774
SchI	GAGTC	3 cut(s)	168, 524, 1734
ScrFI	CCNGG	3 cut(s)	238, 452, 1435
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	5 cut(s)	883, 1303, 1543, 1735, 1800
SfcI	CTRYAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	434, 1763
SnaBI	TACGTA	1 cut(s)	1191
SphI	GCATGC	1 cut(s)	1820
SseBI	AGGCCT	2 cut(s)	1380, 1485
SsiI	CCGC	2 cut(s)	289, 415
SspMI	CTAG	3 cut(s)	263, 549, 845
StuI	AGGCCT	2 cut(s)	1380, 1485
StyD4I	CCNGG	3 cut(s)	236, 450, 1433
StyI	CCWWGG	2 cut(s)	1528, 1608
TaaI	ACNGT	2 cut(s)	658, 1798
TaiI	ACGT	7 cut(s)	616, 674, 878, 977, 1193, 1443, 1864
TaqI	TCGA	8 cut(s)	152, 503, 576, 624, 836, 1206, 1311, 1695
TatI	WGTACW	3 cut(s)	831, 981, 1356
TfiI	GAWTC	2 cut(s)	342, 500
TscAI	CASTG	1 cut(s)	1735
TseFI	GTSAC	3 cut(s)	299, 871, 1645
TseI	GCWGC	7 cut(s)	426, 859, 923, 1175, 1343, 1813, 1910
Tsp45I	GTSAC	3 cut(s)	299, 871, 1645
TspDTI	ATGAA	6 cut(s)	42, 176, 642, 1172, 1617, 1844
TspRI	CASTG	1 cut(s)	1735
XagI	CCTNNNNNAGG	1 cut(s)	639
XceI	RCATGY	1 cut(s)	1820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1711
XmiI	GTMKAC	2 cut(s)	668, 1680
XmnI	GAANNNNTTC	1 cut(s)	1546
XspI	CTAG	3 cut(s)	263, 549, 845
Zsp2I	ATGCAT	2 cut(s)	898, 1750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.