Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017144

Physical Location & Seq

Genomic Coordinates Reverse (-)

3372464 .. 3374650

Gene Structure 2187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16223

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGTTGAAGCTTTCCCGTCCGAACCGGACACTCTTCGCCAGAGCATTCGGTTCATCGTCGTCTTCGCCGGCCGATTTCACCAGCACTATACTGAATTGCAGAAGCCCTACAGAAGCGTTTGAACTCTTCAATTCGGCGTCGAAACAAGCCGGCGCAAGGAAGGATCTTCAGCTTCATTCAGCGATTACTCATGTGTTGGTCAGAGCCAAACTATATATTAAAGCCAGGTGCTTGATAAAAGACTTGATACTAGATCTTCAGAAGTCCTGCAAATCCCGCCGGGCCTGTGACTTGGTTTACAATGCACTTAGCCGTTTGGAGAGGTCTAGATTCTCTGCGCGGAATGTTTTCGGAGTTTTGATCATTGCGTTATCTGAGATGGGTCTTGTTGAAGAAGCTTTGCGGGTGTATGGCAGCATTGGGGTGCTGCCAGCAACCCAGGCTTGTAATGCGCTCTTGGATGGGTTGGTGAAGGCGGGTCAGCTTGATTCGATGTGGGAGCTTTATAATGATATGGACTCTCGCGGATTAAGACCTAGTTGTGTTACGTATGGGGTGTTAATCGAGGGTTGTTGTAAGAAAGGCGATCTCGTAAATGCACGTAAGGTGTTCGATGAAATGCCTGAGAGAGGGATTGAAAGGACAGTTGTGGTGTGTACGTCTCTTATTCGTGGGCTGTGCAATGAGGGGAGGATGGTGGAAGCTGAAAGCATTTTTCGGACGATGAGGAGAGATGGTGTGATGCCAAATCTGTGGACTTACAATTGTCTGATGGATGGGTATTGCAAAGTGGCTGATGTCAAACAAGCCCTTGTGTTGTACTCGAACTTGCTAGGCGATGGCTTGCGGCCGAATGTTGTCACGTTTGGTATTTTGATCGATGCACTTTGCAAAGTTGGCGAACTGATGGCTGCGAGGAGCGTTTTAGTGTGCATGGTTAAGTTTGGTGTTGCGCCTAATACGTTTGTGTACAATGGTTTGATTGACGGGCATTGTAAGGTGGAGGATGTTTCGGAAGCAATGGATTTGAAATTGGAGATGGAGAAGTATGGTGTTCTTCCGGATGTGTTCACTTACAGCATACTAATTAAAGGTCTATGTTCAGTTTGTAGAGTGGAAGAAGCGTATCAGTTGTTGCAAAACATGAAGAAGGAGGGAGTTGCTGCAAATGCTGTTACGTACAATTCACTAATCGATGGGTATTGTAAAGATCGCAATATGGAGAAGGCTTTGGAGGTGTGTTCTGAAATGACCAAAATTGGTATAGAACCAAATGTCATCACCTTCTCTACTTTGATCGATGCTTATTGCAAGATGGGGAACATGGAAGCTGCTATGGGTTTGTACTCGGAAATGGTAGTTAAAGGCCTTCTGCCTGATATAGTAGCTTACACAGCTTTGATTGATGGCCATTTTAAAACCGGGAACGTGAAAGAGGCTCATCACCTGCATAAAGAGATGTTGGAGGCAGGCCTCACGCCCAATGTTTTCACTCTTAGTTGCTTGGTAGACGGCCTTGGTAAAAATGGAAAGAGTTCTGATGCAATCAACCTCTTTTCGGAGAAAACCAAAGTCAGTTCCAATACAGATGAAACCAAGGAAATGGATGGCGACTACTGTTCCCCAAATCATGTGACTTATACAGCTTTAATTCAGGGTCTGTCTGTAGATAGCCGGATTTTCGAGGCAACCAAGTTCTTTTTGGATATGAGAGTCGGTGGTTTGAGACCAGATGCATTCACTTACATTGTCATGTTAAAGGGCCACTTCCAAGCGAAGCACACGCTTGGCGTGATGATGCTGCATGCAGATATGATGAAGACCGGTATCATTCCCAGTATAGATATACGTCCGGTGTTATGTAGGGCTTACCAAGAAATTGGTGACCTAAAATCAGCAGCTAAATTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

637

Amino Acids

70.35

Weight (kDa)

7.7

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	146 - 193	4.5e-15	PPR repeat family
PPR_long	PF17177	158 - 301	2.1e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	175 - 207	1.4e-10	PPR repeat
PPR_2	PF13041	182 - 216	2.7e-07	PPR repeat family
PPR	PF01535	182 - 212	3.6e-08	PPR repeat
PPR_3	PF13812	202 - 261	8.7e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	210 - 243	6e-06	PPR repeat
PPR_2	PF13041	215 - 263	3e-15	PPR repeat family
PPR	PF01535	217 - 247	6e-07	PPR repeat
PPR_1	PF12854	245 - 273	5e-07	PPR repeat
PPR_2	PF13041	249 - 298	1.8e-14	PPR repeat family
PPR_3	PF13812	276 - 328	2.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	280 - 313	1.8e-08	PPR repeat
PPR_2	PF13041	284 - 333	1.2e-11	PPR repeat family
PPR_1	PF12854	316 - 348	1.6e-07	PPR repeat
PPR_2	PF13041	319 - 367	1.1e-17	PPR repeat family
PPR_1	PF12854	351 - 383	2.1e-10	PPR repeat
PPR	PF01535	357 - 387	7.3e-06	PPR repeat
PPR_2	PF13041	367 - 403	1.6e-10	PPR repeat family
PPR_long	PF17177	372 - 479	1.9e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	378 - 438	6.3e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	386 - 418	4.6e-11	PPR repeat
PPR_2	PF13041	390 - 438	6.2e-19	PPR repeat family
PPR	PF01535	392 - 422	1e-09	PPR repeat
PPR_1	PF12854	421 - 453	1.1e-11	PPR repeat
PPR_2	PF13041	426 - 465	8.8e-11	PPR repeat family
PPR	PF01535	427 - 457	1.7e-08	PPR repeat
PPR_3	PF13812	449 - 508	5.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	455 - 487	5.8e-07	PPR repeat
PPR_2	PF13041	459 - 508	2.1e-14	PPR repeat family
PPR	PF01535	462 - 492	2.4e-06	PPR repeat
PPR_1	PF12854	491 - 521	1.6e-06	PPR repeat
PPR_2	PF13041	542 - 589	1.9e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61400
fragaria_vesca	FvH4_5g14610
prunus_persica	Prupe.5G197300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181881
rosa_laevigata	RLG00000005166
rosa_multiflora	Rmu_co8156836.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271670
rosa_rugosa	Rorug06G0444800
rosa_samantha	Rh7AG047000 Rh7BG046600 Rh7CG047100 Rh7DG046200
rosa_wichuraiana	Rw7G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	507
AarI	CACCTGC	1 cut(s)	1455
Acc36I	ACCTGC	1 cut(s)	1455
AccI	GTMKAC	1 cut(s)	1509
AccII	CGCG	2 cut(s)	340, 525
AccIII	TCCGGA	1 cut(s)	1060
AciI	CCGC	6 cut(s)	277, 340, 403, 476, 525, 847
AclWI	GGATC	1 cut(s)	171
AcoI	YGGCCR	3 cut(s)	69, 848, 1408
AcuI	CTGAAG	2 cut(s)	152, 242
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	5 cut(s)	658, 821, 971, 1181, 1346
AfiI	CCNNNNNNNGG	3 cut(s)	156, 629, 1558
AgeI	ACCGGT	1 cut(s)	1823
AgsI	TTSAA	6 cut(s)	7, 122, 130, 392, 638, 1030
AjnI	CCWGG	2 cut(s)	224, 438
Alw26I	GTCTC	2 cut(s)	666, 1720
AlwI	GGATC	1 cut(s)	171
AlwNI	CAGNNNCTG	1 cut(s)	1660
Aor13HI	TCCGGA	1 cut(s)	1060
AoxI	GGCC	8 cut(s)	69, 282, 848, 1366, 1408, 1471, 1513, 1762
ApeKI	GCWGC	7 cut(s)	414, 427, 911, 1163, 1331, 1801, 1898
AsiGI	ACCGGT	1 cut(s)	1823
Asp700I	GAANNNNTTC	2 cut(s)	347, 1534
AspLEI	GCGC	4 cut(s)	155, 340, 454, 955
AspS9I	GGNCC	2 cut(s)	282, 1762
AsuC2I	CCSGG	2 cut(s)	281, 1423
AsuHPI	GGTGA	5 cut(s)	70, 481, 1273, 1436, 1895
BalI	TGGCCA	1 cut(s)	1410
BbsI	GAAGAC	2 cut(s)	54, 1826
BbvI	GCAGC	7 cut(s)	414, 426, 898, 1150, 1318, 1788, 1910
BceAI	ACGGC	2 cut(s)	297, 1528
BciT130I	CCWGG	2 cut(s)	226, 440
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	281, 1423
BcoDI	GTCTC	2 cut(s)	666, 1720
BfaI	CTAG	4 cut(s)	251, 327, 537, 833
BfmI	CTRYAG	2 cut(s)	108, 1665
BfuAI	ACCTGC	1 cut(s)	1455
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	8 cut(s)	415, 428, 848, 912, 1164, 1332, 1802, 1899
BlsI	GCNGC	8 cut(s)	416, 429, 849, 913, 1165, 1333, 1803, 1900
Bme1390I	CCNGG	4 cut(s)	226, 281, 440, 1423
BmgT120I	GGNCC	2 cut(s)	282, 1762
BmrFI	CCNGG	4 cut(s)	226, 281, 440, 1423
BmrI	ACTGGG	1 cut(s)	1830
BmsI	GCATC	6 cut(s)	732, 871, 1291, 1531, 1723, 1788
BmuI	ACTGGG	1 cut(s)	1830
BpiI	GAAGAC	2 cut(s)	54, 1826
BpuMI	CCSGG	2 cut(s)	281, 1423
Bsa29I	ATCGAT	3 cut(s)	879, 1194, 1299
BsaAI	YACGTR	3 cut(s)	549, 602, 1179
BsaHI	GRCGYC	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	1720
BsaJI	CCNNGG	3 cut(s)	438, 1516, 1596
BsaWI	WCCGGW	4 cut(s)	24, 1060, 1823, 1852
BsaXI	ACNNNNNCTCC	2 cut(s)	721, 751
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 629, 1558
Bse118I	RCCGGY	3 cut(s)	67, 149, 1823
Bse1I	ACTGG	1 cut(s)	1836
Bse3DI	GCAATG	3 cut(s)	363, 688, 1026
BseAI	TCCGGA	1 cut(s)	1060
BseBI	CCWGG	2 cut(s)	226, 440
BseCI	ATCGAT	3 cut(s)	879, 1194, 1299
BseDI	CCNNGG	3 cut(s)	438, 1516, 1596
BseGI	GGATG	6 cut(s)	466, 699, 781, 1012, 1069, 1612
BseLI	CCNNNNNNNGG	3 cut(s)	156, 629, 1558
BseMI	GCAATG	3 cut(s)	363, 688, 1026
BseMII	CTCAG	2 cut(s)	366, 615
BseNI	ACTGG	1 cut(s)	1836
BseRI	GAGGAG	2 cut(s)	742, 931
BseX3I	CGGCCG	2 cut(s)	69, 848
BseXI	GCAGC	7 cut(s)	414, 426, 898, 1150, 1318, 1788, 1910
Bsh1236I	CGCG	2 cut(s)	340, 525
Bsh1285I	CGRYCG	2 cut(s)	72, 851
BshFI	GGCC	8 cut(s)	71, 284, 850, 1368, 1410, 1473, 1515, 1764
BshTI	ACCGGT	1 cut(s)	1823
BshVI	ATCGAT	3 cut(s)	879, 1194, 1299
BsiEI	CGRYCG	2 cut(s)	72, 851
BsiSI	CCGG	9 cut(s)	25, 68, 150, 280, 1061, 1422, 1675, 1824, 1853
BslI	CCNNNNNNNGG	3 cut(s)	156, 629, 1558
BsmAI	GTCTC	2 cut(s)	666, 1720
BsmBI	CGTCTC	1 cut(s)	666
BsmI	GAATGC	2 cut(s)	44, 1736
BsnI	GGCC	8 cut(s)	71, 284, 850, 1368, 1410, 1473, 1515, 1764
Bso31I	GGTCTC	1 cut(s)	1720
Bsp13I	TCCGGA	1 cut(s)	1060
Bsp1407I	TGTACA	1 cut(s)	969
Bsp143I	GATC	7 cut(s)	163, 253, 360, 586, 876, 1210, 1296
BspACI	CCGC	6 cut(s)	277, 340, 403, 476, 525, 847
BspANI	GGCC	8 cut(s)	71, 284, 850, 1368, 1410, 1473, 1515, 1764
BspCNI	CTCAG	2 cut(s)	367, 616
BspDI	ATCGAT	3 cut(s)	879, 1194, 1299
BspEI	TCCGGA	1 cut(s)	1060
BspFNI	CGCG	2 cut(s)	340, 525
BspMI	ACCTGC	1 cut(s)	1455
BspPI	GGATC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	1720
BsrDI	GCAATG	3 cut(s)	363, 688, 1026
BsrFI	RCCGGY	3 cut(s)	67, 149, 1823
BsrGI	TGTACA	1 cut(s)	969
BsrI	ACTGG	1 cut(s)	1836
BssAI	RCCGGY	3 cut(s)	67, 149, 1823
BssECI	CCNNGG	3 cut(s)	438, 1516, 1596
BssMI	GATC	7 cut(s)	163, 253, 360, 586, 876, 1210, 1296
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	2 cut(s)	1516, 1596
Bst2UI	CCWGG	2 cut(s)	226, 440
Bst4CI	ACNGT	2 cut(s)	646, 1619
Bst6I	CTCTTC	2 cut(s)	38, 131
BstACI	GRCGYC	1 cut(s)	137
BstAUI	TGTACA	1 cut(s)	969
BstBAI	YACGTR	3 cut(s)	549, 602, 1179
BstC8I	GCNNGC	6 cut(s)	69, 151, 432, 845, 1471, 1806
BstDEI	CTNAG	4 cut(s)	308, 375, 624, 1496
BstEII	GGTNACC	1 cut(s)	1883
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	6 cut(s)	466, 699, 781, 1012, 1069, 1612
BstFNI	CGCG	2 cut(s)	340, 525
BstHHI	GCGC	4 cut(s)	155, 340, 454, 955
BstKTI	GATC	7 cut(s)	166, 256, 363, 589, 879, 1213, 1299
BstMAI	GTCTC	2 cut(s)	666, 1720
BstMBI	GATC	7 cut(s)	163, 253, 360, 586, 876, 1210, 1296
BstMCI	CGRYCG	2 cut(s)	72, 851
BstMWI	GCNNNNNNNGC	6 cut(s)	276, 440, 449, 897, 1169, 1394
BstNI	CCWGG	2 cut(s)	226, 440
BstNSI	RCATGY	1 cut(s)	1808
BstPI	GGTNACC	1 cut(s)	1883
BstSCI	CCNGG	4 cut(s)	224, 279, 438, 1421
BstSFI	CTRYAG	2 cut(s)	108, 1665
BstSNI	TACGTA	2 cut(s)	549, 1179
BstUI	CGCG	2 cut(s)	340, 525
BstV1I	GCAGC	7 cut(s)	414, 426, 898, 1150, 1318, 1788, 1910
BstV2I	GAAGAC	2 cut(s)	54, 1826
BstX2I	RGATCY	2 cut(s)	163, 253
BstXI	CCANNNNNNTGG	3 cut(s)	753, 1603, 1880
BstYI	RGATCY	2 cut(s)	163, 253
BstZI	CGGCCG	2 cut(s)	69, 848
Bsu15I	ATCGAT	3 cut(s)	879, 1194, 1299
BsuRI	GGCC	8 cut(s)	71, 284, 850, 1368, 1410, 1473, 1515, 1764
BsuTUI	ATCGAT	3 cut(s)	879, 1194, 1299
BtgZI	GCGATG	1 cut(s)	852
BtsCI	GGATG	6 cut(s)	466, 699, 781, 1012, 1069, 1612
BveI	ACCTGC	1 cut(s)	1455
Cac8I	GCNNGC	6 cut(s)	69, 151, 432, 845, 1471, 1806
CaiI	CAGNNNCTG	1 cut(s)	1660
CfoI	GCGC	4 cut(s)	155, 340, 454, 955
Cfr10I	RCCGGY	3 cut(s)	67, 149, 1823
Cfr13I	GGNCC	2 cut(s)	282, 1762
ClaI	ATCGAT	3 cut(s)	879, 1194, 1299
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	5 cut(s)	657, 820, 970, 1180, 1345
CspAI	ACCGGT	1 cut(s)	1823
CviAII	CATG	7 cut(s)	191, 934, 1144, 1324, 1631, 1753, 1805
CviQI	GTAC	5 cut(s)	657, 820, 970, 1180, 1345
DdeI	CTNAG	4 cut(s)	308, 375, 624, 1496
DpnI	GATC	7 cut(s)	165, 255, 362, 588, 878, 1212, 1298
DpnII	GATC	7 cut(s)	163, 253, 360, 586, 876, 1210, 1296
DraI	TTTAAA	1 cut(s)	1417
EaeI	YGGCCR	3 cut(s)	69, 848, 1408
EagI	CGGCCG	2 cut(s)	69, 848
Eam1104I	CTCTTC	2 cut(s)	38, 131
EarI	CTCTTC	2 cut(s)	38, 131
EclXI	CGGCCG	2 cut(s)	69, 848
Eco105I	TACGTA	2 cut(s)	549, 1179
Eco130I	CCWWGG	2 cut(s)	1516, 1596
Eco147I	AGGCCT	2 cut(s)	1368, 1473
Eco31I	GGTCTC	1 cut(s)	1720
Eco52I	CGGCCG	2 cut(s)	69, 848
Eco57I	CTGAAG	2 cut(s)	152, 242
Eco91I	GGTNACC	1 cut(s)	1883
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoO65I	GGTNACC	1 cut(s)	1883
EcoRII	CCWGG	2 cut(s)	224, 438
EcoT14I	CCWWGG	2 cut(s)	1516, 1596
EcoT22I	ATGCAT	1 cut(s)	1738
ErhI	CCWWGG	2 cut(s)	1516, 1596
Esp3I	CGTCTC	1 cut(s)	666
FaeI	CATG	7 cut(s)	194, 937, 1147, 1327, 1634, 1756, 1808
FalI	AAGNNNNNCTT	2 cut(s)	1751, 1783
FatI	CATG	7 cut(s)	190, 933, 1143, 1323, 1630, 1752, 1804
FauI	CCCGC	3 cut(s)	284, 396, 469
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	1509
Fnu4HI	GCNGC	8 cut(s)	415, 428, 848, 912, 1164, 1332, 1802, 1899
FokI	GGATG	6 cut(s)	473, 706, 788, 1019, 1076, 1619
Fsp4HI	GCNGC	8 cut(s)	415, 428, 848, 912, 1164, 1332, 1802, 1899
FspBI	CTAG	4 cut(s)	251, 327, 537, 833
GlaI	GCGC	4 cut(s)	154, 339, 453, 954
GluI	GCNGC	8 cut(s)	415, 428, 848, 912, 1164, 1332, 1802, 1899
HaeIII	GGCC	8 cut(s)	71, 284, 850, 1368, 1410, 1473, 1515, 1764
HapII	CCGG	9 cut(s)	25, 68, 150, 280, 1061, 1422, 1675, 1824, 1853
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	4 cut(s)	155, 340, 454, 955
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	7 cut(s)	194, 937, 1147, 1327, 1634, 1756, 1808
Hin6I	GCGC	4 cut(s)	153, 338, 452, 953
HinP1I	GCGC	4 cut(s)	153, 338, 452, 953
HindIII	AAGCTT	2 cut(s)	8, 396
HinfI	GANTC	4 cut(s)	330, 488, 518, 1713
HpaII	CCGG	9 cut(s)	25, 68, 150, 280, 1061, 1422, 1675, 1824, 1853
HphI	GGTGA	5 cut(s)	70, 481, 1273, 1436, 1895
Hpy166II	GTNNAC	6 cut(s)	298, 657, 756, 970, 1071, 1510
Hpy188III	TCNNGA	2 cut(s)	327, 1061
Hpy8I	GTNNAC	6 cut(s)	298, 657, 756, 970, 1071, 1510
Hpy99I	CGWCG	2 cut(s)	61, 142
HpyAV	CCTTC	6 cut(s)	154, 466, 1144, 1219, 1294, 1379
HpyCH4III	ACNGT	2 cut(s)	646, 1619
HpyCH4IV	ACGT	8 cut(s)	548, 601, 659, 863, 962, 1178, 1428, 1849
HpyF10VI	GCNNNNNNNGC	6 cut(s)	276, 440, 449, 897, 1169, 1394
HpyF3I	CTNAG	4 cut(s)	308, 375, 624, 1496
HpySE526I	ACGT	8 cut(s)	548, 601, 659, 863, 962, 1178, 1428, 1849
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	7 cut(s)	194, 937, 1147, 1327, 1634, 1756, 1808
HspAI	GCGC	4 cut(s)	153, 338, 452, 953
Kpn2I	TCCGGA	1 cut(s)	1060
KroI	GCCGGC	2 cut(s)	67, 149
KroNI	GCCGGC	2 cut(s)	69, 151
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	7 cut(s)	163, 253, 360, 586, 876, 1210, 1296
LmnI	GCTCC	2 cut(s)	499, 918
Lsp1109I	GCAGC	7 cut(s)	414, 426, 898, 1150, 1318, 1788, 1910
LweI	GCATC	6 cut(s)	732, 871, 1291, 1531, 1723, 1788
MaeI	CTAG	4 cut(s)	251, 327, 537, 833
MaeII	ACGT	8 cut(s)	548, 601, 659, 863, 962, 1178, 1428, 1849
MaeIII	GTNAC	6 cut(s)	287, 544, 859, 1174, 1633, 1883
MalI	GATC	7 cut(s)	165, 255, 362, 588, 878, 1212, 1298
MboI	GATC	7 cut(s)	163, 253, 360, 586, 876, 1210, 1296
MfeI	CAATTG	1 cut(s)	763
MflI	RGATCY	2 cut(s)	163, 253
MlsI	TGGCCA	1 cut(s)	1410
MluNI	TGGCCA	1 cut(s)	1410
MlyI	GAGTC	2 cut(s)	512, 1722
MmeI	TCCRAC	1 cut(s)	1443
Mox20I	TGGCCA	1 cut(s)	1410
Mph1103I	ATGCAT	1 cut(s)	1738
MroI	TCCGGA	1 cut(s)	1060
MroNI	GCCGGC	2 cut(s)	67, 149
MroXI	GAANNNNTTC	2 cut(s)	347, 1534
MscI	TGGCCA	1 cut(s)	1410
MseI	TTAA	9 cut(s)	219, 530, 560, 939, 1089, 1362, 1416, 1649, 1757
MslI	CAYNNNNRTG	2 cut(s)	422, 1751
Msp20I	TGGCCA	1 cut(s)	1410
MspI	CCGG	9 cut(s)	25, 68, 150, 280, 1061, 1422, 1675, 1824, 1853
MspR9I	CCNGG	4 cut(s)	226, 281, 440, 1423
MunI	CAATTG	1 cut(s)	763
Mva1269I	GAATGC	2 cut(s)	44, 1736
MvaI	CCWGG	2 cut(s)	226, 440
MvnI	CGCG	2 cut(s)	340, 525
MwoI	GCNNNNNNNGC	6 cut(s)	276, 440, 449, 897, 1169, 1394
NaeI	GCCGGC	2 cut(s)	69, 151
NciI	CCSGG	2 cut(s)	281, 1423
NdeII	GATC	7 cut(s)	163, 253, 360, 586, 876, 1210, 1296
NgoMIV	GCCGGC	2 cut(s)	67, 149
NlaIII	CATG	7 cut(s)	194, 937, 1147, 1327, 1634, 1756, 1808
NmuCI	GTSAC	4 cut(s)	287, 859, 1633, 1883
NsiI	ATGCAT	1 cut(s)	1738
NspI	RCATGY	1 cut(s)	1808
PaeI	GCATGC	1 cut(s)	1808
PaqCI	CACCTGC	1 cut(s)	1455
PceI	AGGCCT	2 cut(s)	1368, 1473
PctI	GAATGC	2 cut(s)	44, 1736
PdiI	GCCGGC	2 cut(s)	69, 151
PdmI	GAANNNNTTC	2 cut(s)	347, 1534
PfeI	GAWTC	2 cut(s)	330, 488
PinAI	ACCGGT	1 cut(s)	1823
PkrI	GCNGC	8 cut(s)	416, 429, 849, 913, 1165, 1333, 1803, 1900
PleI	GAGTC	2 cut(s)	512, 1721
PpsI	GAGTC	2 cut(s)	512, 1721
Ppu21I	YACGTR	3 cut(s)	549, 602, 1179
PsiI	TTATAA	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	224, 438
PspEI	GGTNACC	1 cut(s)	1883
PspGI	CCWGG	2 cut(s)	224, 438
PspPI	GGNCC	2 cut(s)	282, 1762
PstNI	CAGNNNCTG	1 cut(s)	1660
PsuI	RGATCY	2 cut(s)	163, 253
RsaI	GTAC	5 cut(s)	658, 821, 971, 1181, 1346
RsaNI	GTAC	5 cut(s)	657, 820, 970, 1180, 1345
RseI	CAYNNNNRTG	2 cut(s)	422, 1751
SaqAI	TTAA	9 cut(s)	219, 530, 560, 939, 1089, 1362, 1416, 1649, 1757
SatI	GCNGC	8 cut(s)	415, 428, 848, 912, 1164, 1332, 1802, 1899
Sau3AI	GATC	7 cut(s)	163, 253, 360, 586, 876, 1210, 1296
Sau96I	GGNCC	2 cut(s)	282, 1762
SchI	GAGTC	2 cut(s)	512, 1722
ScrFI	CCNGG	4 cut(s)	226, 281, 440, 1423
SfaNI	GCATC	6 cut(s)	732, 871, 1291, 1531, 1723, 1788
SfcI	CTRYAG	2 cut(s)	108, 1665
SmiMI	CAYNNNNRTG	2 cut(s)	422, 1751
SnaBI	TACGTA	2 cut(s)	549, 1179
SphI	GCATGC	1 cut(s)	1808
SseBI	AGGCCT	2 cut(s)	1368, 1473
SsiI	CCGC	6 cut(s)	277, 340, 403, 476, 525, 847
SspMI	CTAG	4 cut(s)	251, 327, 537, 833
StuI	AGGCCT	2 cut(s)	1368, 1473
StyD4I	CCNGG	4 cut(s)	224, 279, 438, 1421
StyI	CCWWGG	2 cut(s)	1516, 1596
TaaI	ACNGT	2 cut(s)	646, 1619
TaiI	ACGT	8 cut(s)	551, 604, 662, 866, 965, 1181, 1431, 1852
TaqI	TCGA	9 cut(s)	140, 491, 564, 612, 824, 879, 1194, 1299, 1683
TatI	WGTACW	3 cut(s)	819, 969, 1344
TauI	GCSGC	1 cut(s)	850
TfiI	GAWTC	2 cut(s)	330, 488
Tru1I	TTAA	9 cut(s)	219, 530, 560, 939, 1089, 1362, 1416, 1649, 1757
Tru9I	TTAA	9 cut(s)	219, 530, 560, 939, 1089, 1362, 1416, 1649, 1757
TseFI	GTSAC	4 cut(s)	287, 859, 1633, 1883
TseI	GCWGC	7 cut(s)	414, 427, 911, 1163, 1331, 1801, 1898
Tsp45I	GTSAC	4 cut(s)	287, 859, 1633, 1883
TspDTI	ATGAA	6 cut(s)	42, 164, 630, 1160, 1605, 1832
XagI	CCTNNNNNAGG	1 cut(s)	627
XbaI	TCTAGA	1 cut(s)	326
XceI	RCATGY	1 cut(s)	1808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1699
XmiI	GTMKAC	1 cut(s)	1509
XmnI	GAANNNNTTC	2 cut(s)	347, 1534
XspI	CTAG	4 cut(s)	251, 327, 537, 833
Zsp2I	ATGCAT	1 cut(s)	1738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.