Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0017144

Physical Location & Seq

Genomic Coordinates Reverse (-)

3202564 .. 3203019

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG047100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTTGGAGGCAGGCCTCACGCCCAATGTTTTCACTCTTAGTTGCTTGGTAGACGGCCTTGGTAAAAATGGAAAGAGTTCTGATGCAATCAACCTCTTTTCGGAGAAAACTAAAGTCAGTTCCAATACAGATGAAACCAAGGAAATGGATGGCGACTTCTGTTCCCCAAATCATGTGACTTATACAGCTTTAATTCAGGGTCTGTCTGTAGACAGCCGGATTTTCGAGGCAACCAAGTTCTTTTTGGATATGAGAGTCAGTGGTTTGAGACCAGATGCATTCACTTACATTGTCATGTTAAAGGGTCACTTCCAAGCGAAGCACACGCTTGGCGTGATGATGCTGCATGCAGATATGATGAAGACGGGTATCATTCCCAGTATAGATATACGTCCGGTGTTATGTAGGGCTTACCAAGAAATTGGTGACCTAAAATCAGCAGCTAAATTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

151

Amino Acids

16.63

Weight (kDa)

6.4

Isoelectric Point (pI)

17.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	5 - 35	2.2e-07	PPR repeat
PPR_2	PF13041	56 - 103	9.5e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61400
fragaria_vesca	FvH4_5g14610
prunus_persica	Prupe.5G197300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181881
rosa_laevigata	RLG00000005166
rosa_multiflora	Rmu_co8156836.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271670
rosa_rugosa	Rorug06G0444800
rosa_samantha	Rh7AG047000 Rh7BG046600 Rh7CG047100 Rh7DG046200
rosa_wichuraiana	Rw7G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	51, 210
AfiI	CCNNNNNNNGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	188, 443
AluI	AGCT	2 cut(s)	188, 443
Alw26I	GTCTC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	202
AoxI	GGCC	2 cut(s)	13, 55
ApeKI	GCWGC	2 cut(s)	343, 440
Asp700I	GAANNNNTTC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	2 cut(s)	330, 452
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	262
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	2 cut(s)	344, 441
BlsI	GCNGC	2 cut(s)	345, 442
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	3 cut(s)	73, 265, 330
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	58, 138
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	58, 138
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	2 cut(s)	330, 452
BshFI	GGCC	2 cut(s)	15, 57
BsiSI	CCGG	2 cut(s)	217, 395
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	15, 57
Bso31I	GGTCTC	1 cut(s)	262
BspANI	GGCC	2 cut(s)	15, 57
BspTNI	GGTCTC	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	58, 138
BssT1I	CCWWGG	2 cut(s)	58, 138
BstC8I	GCNNGC	2 cut(s)	13, 348
BstDEI	CTNAG	1 cut(s)	38
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	350
BstPI	GGTNACC	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	330, 452
BstV2I	GAAGAC	1 cut(s)	368
BstXI	CCANNNNNNTGG	2 cut(s)	145, 422
BsuRI	GGCC	2 cut(s)	15, 57
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	13, 348
CaiI	CAGNNNCTG	1 cut(s)	202
CviAII	CATG	3 cut(s)	173, 295, 347
CviJI	RGCY	6 cut(s)	15, 57, 188, 216, 410, 443
CviKI_1	RGCY	6 cut(s)	15, 57, 188, 216, 410, 443
DdeI	CTNAG	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	58, 138
Eco147I	AGGCCT	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	262
Eco91I	GGTNACC	1 cut(s)	425
EcoO65I	GGTNACC	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	58, 138
EcoT22I	ATGCAT	1 cut(s)	280
ErhI	CCWWGG	2 cut(s)	58, 138
FaeI	CATG	3 cut(s)	176, 298, 350
FaiI	YATR	9 cut(s)	174, 183, 251, 296, 348, 356, 383, 389, 403
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	3 cut(s)	172, 294, 346
FblI	GTMKAC	2 cut(s)	51, 210
Fnu4HI	GCNGC	2 cut(s)	344, 441
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	2 cut(s)	344, 441
GluI	GCNGC	2 cut(s)	344, 441
HaeIII	GGCC	2 cut(s)	15, 57
HapII	CCGG	2 cut(s)	217, 395
Hin1II	CATG	3 cut(s)	176, 298, 350
HinfI	GANTC	1 cut(s)	255
HpaII	CCGG	2 cut(s)	217, 395
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	52, 211
Hpy188I	TCNGA	3 cut(s)	82, 103, 455
Hpy8I	GTNNAC	2 cut(s)	52, 211
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	4 cut(s)	86, 278, 346, 350
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	3 cut(s)	176, 298, 350
LpnPI	CCDG	5 cut(s)	182, 230, 285, 391, 408
Lsp1109I	GCAGC	2 cut(s)	330, 452
LweI	GCATC	3 cut(s)	73, 265, 330
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	3 cut(s)	175, 305, 425
MboII	GAAGA	1 cut(s)	373
MluCI	AATT	3 cut(s)	192, 420, 446
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	3 cut(s)	26, 104, 220
Mph1103I	ATGCAT	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	2 cut(s)	191, 299
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	2 cut(s)	217, 395
Mva1269I	GAATGC	1 cut(s)	278
NlaIII	CATG	3 cut(s)	176, 298, 350
NmuCI	GTSAC	3 cut(s)	175, 305, 425
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	15
PctI	GAATGC	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	345, 442
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspEI	GGTNACC	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	191, 299
SatI	GCNGC	2 cut(s)	344, 441
SchI	GAGTC	1 cut(s)	264
SetI	ASST	5 cut(s)	96, 190, 394, 432, 445
SfaNI	GCATC	3 cut(s)	73, 265, 330
SfcI	CTRYAG	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	3 cut(s)	192, 420, 446
SseBI	AGGCCT	1 cut(s)	15
StuI	AGGCCT	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	58, 138
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	225
TasI	AATT	3 cut(s)	192, 420, 446
Tru1I	TTAA	2 cut(s)	191, 299
Tru9I	TTAA	2 cut(s)	191, 299
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	3 cut(s)	175, 305, 425
TseI	GCWGC	2 cut(s)	343, 440
Tsp45I	GTSAC	3 cut(s)	175, 305, 425
TspDTI	ATGAA	2 cut(s)	147, 374
TspRI	CASTG	1 cut(s)	265
XceI	RCATGY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmiI	GTMKAC	2 cut(s)	51, 210
XmnI	GAANNNNTTC	1 cut(s)	76
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.