Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8156836.1

Orthogroup ID

OG0017144

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 657

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8156836.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

cggcgcaaggaaggatcttcagcttcattcagcgattactcatgtgttggtcagagcgaaactatatattaaagccaggtgcttgataaaagacttgatactagatcttcagaagtcctgcaaatcccgccgggcctgtgacttggtttacaatgcacttagccgtttggagaggtctagattctctgcgcggaatgttttcggagttttgatcattgcgttatctgagatgggtcttgttgaagaagctttgcgggtgtatggcagcattggggtgctgccagcaacccaggcttgtaatgcgctcttggatgggttggtgaaggcgggtcagcttgattcgatgtgggagctttataatgatatggactctcgcggattaagacctagttgtgttacgtatggggtgttaatcgagggttgttgtaagaaaggcgatctcgtaaatgcacgtaaggtgttcgatgaaatgcctgagagagggattgaaaggacagttgtggtgtgtacgtctcttattcgtgggctgtgcaatgaggggaggatggtggaagctgaaagcatttttcggacgatgaggagagatggtgtgatgccaaatctgtggacttacaattgtctgatggatgggtattgcaaagtggctgatgtcaaaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

218

Amino Acids

24.39

Weight (kDa)

8.87

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61400
fragaria_vesca	FvH4_5g14610
prunus_persica	Prupe.5G197300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181881
rosa_laevigata	RLG00000005166
rosa_multiflora	Rmu_co8156836.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271670
rosa_rugosa	Rorug06G0444800
rosa_samantha	Rh7AG047000 Rh7BG046600 Rh7CG047100 Rh7DG046200
rosa_wichuraiana	Rw7G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	358
AccII	CGCG	2 cut(s)	191, 376
AciI	CCGC	5 cut(s)	128, 191, 254, 327, 376
AclWI	GGATC	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	2 cut(s)	243, 489
AjnI	CCWGG	2 cut(s)	75, 289
AluBI	AGCT	5 cut(s)	23, 249, 335, 353, 555
AluI	AGCT	5 cut(s)	23, 249, 335, 353, 555
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	265, 278
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	3 cut(s)	6, 191, 305
AspS9I	GGNCC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	265, 277
BccI	CCATC	6 cut(s)	224, 306, 539, 579, 617, 621
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	2 cut(s)	77, 291
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	3 cut(s)	102, 178, 388
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	2 cut(s)	266, 279
BlsI	GCNGC	2 cut(s)	267, 280
Bme1390I	CCNGG	3 cut(s)	77, 132, 291
BmgT120I	GGNCC	1 cut(s)	133
BmrFI	CCNGG	3 cut(s)	77, 132, 291
BmsI	GCATC	1 cut(s)	583
BpuMI	CCSGG	1 cut(s)	132
BsaAI	YACGTR	2 cut(s)	400, 453
BsaJI	CCNNGG	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse3DI	GCAATG	2 cut(s)	214, 539
BseBI	CCWGG	2 cut(s)	77, 291
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	3 cut(s)	317, 550, 632
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMI	GCAATG	2 cut(s)	214, 539
BseMII	CTCAG	2 cut(s)	217, 466
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	2 cut(s)	265, 277
Bsh1236I	CGCG	2 cut(s)	191, 376
BshFI	GGCC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	1 cut(s)	517
BsmBI	CGTCTC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	14, 104, 211, 437
BspACI	CCGC	5 cut(s)	128, 191, 254, 327, 376
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	2 cut(s)	218, 467
BspFNI	CGCG	2 cut(s)	191, 376
BspPI	GGATC	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	214, 539
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	4 cut(s)	14, 104, 211, 437
Bst2UI	CCWGG	2 cut(s)	77, 291
Bst4CI	ACNGT	1 cut(s)	497
BstBAI	YACGTR	2 cut(s)	400, 453
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	3 cut(s)	159, 226, 475
BstENI	CCTNNNNNAGG	1 cut(s)	478
BstF5I	GGATG	3 cut(s)	317, 550, 632
BstFNI	CGCG	2 cut(s)	191, 376
BstHHI	GCGC	3 cut(s)	6, 191, 305
BstKTI	GATC	4 cut(s)	17, 107, 214, 440
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	4 cut(s)	14, 104, 211, 437
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 291, 300
BstNI	CCWGG	2 cut(s)	77, 291
BstSCI	CCNGG	3 cut(s)	75, 130, 289
BstSNI	TACGTA	1 cut(s)	400
BstUI	CGCG	2 cut(s)	191, 376
BstV1I	GCAGC	2 cut(s)	265, 277
BstX2I	RGATCY	2 cut(s)	14, 104
BstXI	CCANNNNNNTGG	1 cut(s)	604
BstYI	RGATCY	2 cut(s)	14, 104
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	317, 550, 632
Cac8I	GCNNGC	1 cut(s)	283
CfoI	GCGC	3 cut(s)	6, 191, 305
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	1 cut(s)	42
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	3 cut(s)	159, 226, 475
DpnI	GATC	4 cut(s)	16, 106, 213, 439
DpnII	GATC	4 cut(s)	14, 104, 211, 437
Eco105I	TACGTA	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	93
EcoNI	CCTNNNNNAGG	1 cut(s)	478
EcoRII	CCWGG	2 cut(s)	75, 289
Esp3I	CGTCTC	1 cut(s)	517
FaeI	CATG	1 cut(s)	45
FaiI	YATR	7 cut(s)	43, 65, 67, 262, 358, 366, 403
FatI	CATG	1 cut(s)	41
FauI	CCCGC	3 cut(s)	135, 247, 320
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	266, 279
FokI	GGATG	3 cut(s)	324, 557, 639
Fsp4HI	GCNGC	2 cut(s)	266, 279
FspBI	CTAG	3 cut(s)	102, 178, 388
GlaI	GCGC	3 cut(s)	5, 190, 304
GluI	GCNGC	2 cut(s)	266, 279
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	3 cut(s)	6, 191, 305
Hin1II	CATG	1 cut(s)	45
Hin6I	GCGC	3 cut(s)	4, 189, 303
HinP1I	GCGC	3 cut(s)	4, 189, 303
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	3 cut(s)	181, 339, 369
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	3 cut(s)	149, 508, 607
Hpy188I	TCNGA	6 cut(s)	54, 112, 204, 227, 571, 622
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	3 cut(s)	149, 508, 607
HpyAV	CCTTC	2 cut(s)	5, 317
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	3 cut(s)	399, 452, 510
HpyCH4V	TGCA	5 cut(s)	121, 156, 450, 532, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 291, 300
HpyF3I	CTNAG	3 cut(s)	159, 226, 475
HpySE526I	ACGT	3 cut(s)	399, 452, 510
Hsp92II	CATG	1 cut(s)	45
HspAI	GCGC	3 cut(s)	4, 189, 303
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	14, 104, 211, 437
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	9 cut(s)	62, 89, 131, 144, 149, 276, 295, 303, 487
Lsp1109I	GCAGC	2 cut(s)	265, 277
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	3 cut(s)	102, 178, 388
MaeII	ACGT	3 cut(s)	399, 452, 510
MaeIII	GTNAC	2 cut(s)	138, 395
MalI	GATC	4 cut(s)	16, 106, 213, 439
MboI	GATC	4 cut(s)	14, 104, 211, 437
MboII	GAAGA	3 cut(s)	9, 99, 255
MfeI	CAATTG	1 cut(s)	614
MflI	RGATCY	2 cut(s)	14, 104
MluCI	AATT	1 cut(s)	614
MlyI	GAGTC	1 cut(s)	363
MnlI	CCTC	6 cut(s)	166, 410, 474, 530, 535, 571
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	3 cut(s)	70, 381, 411
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	3 cut(s)	77, 132, 291
MunI	CAATTG	1 cut(s)	614
MvaI	CCWGG	2 cut(s)	77, 291
MvnI	CGCG	2 cut(s)	191, 376
MwoI	GCNNNNNNNGC	3 cut(s)	127, 291, 300
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	4 cut(s)	14, 104, 211, 437
NlaIII	CATG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	181, 339
PkrI	GCNGC	2 cut(s)	267, 280
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
Ppu21I	YACGTR	2 cut(s)	400, 453
PsiI	TTATAA	1 cut(s)	358
Psp6I	CCWGG	2 cut(s)	75, 289
PspGI	CCWGG	2 cut(s)	75, 289
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	14, 104
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	70, 381, 411
SatI	GCNGC	2 cut(s)	266, 279
Sau3AI	GATC	4 cut(s)	14, 104, 211, 437
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	3 cut(s)	77, 132, 291
SfaNI	GCATC	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	273
SnaBI	TACGTA	1 cut(s)	400
Sse9I	AATT	1 cut(s)	614
SsiI	CCGC	5 cut(s)	128, 191, 254, 327, 376
SspMI	CTAG	3 cut(s)	102, 178, 388
StyD4I	CCNGG	3 cut(s)	75, 130, 289
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	3 cut(s)	402, 455, 513
TaqI	TCGA	3 cut(s)	342, 415, 463
TasI	AATT	1 cut(s)	614
TfiI	GAWTC	2 cut(s)	181, 339
Tru1I	TTAA	3 cut(s)	70, 381, 411
Tru9I	TTAA	3 cut(s)	70, 381, 411
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	2 cut(s)	265, 278
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	15, 481
XagI	CCTNNNNNAGG	1 cut(s)	478
XbaI	TCTAGA	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	3 cut(s)	102, 178, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.