Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0017144

Physical Location & Seq

Genomic Coordinates Reverse (-)

3080525 .. 3082429

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG046600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGTTGAAGCTTTCCCGTCCGAACCGGACACTCTTCGCCAGAGCATTCGGTTCATCGTCGGCCGATTTCACCAGCACTATACTGAATTGCAGAAGCCCTACAGAAGCGTTTGAGCTCTTCAATTCGGCGTCGAAACAAGTCGGCGCAAGGAAGGATCTTCAGCTTCATTCAGCGATTACTCATGTGTTGGTCAGAGCCAAACTATATATTAAAGCCAGGTGCTTGATAAAAGACTTGATACTAGATCTTCAGAAGTCCTGCAAACCCCGCCGTGCCTGTGACTTAGTTTACAATGCACTTAGCCGTTTGGAGAGGTCTAGATTCTCTGCTCGGAATGTTTTCGGAGTTTTGATCATTGCGTTATCTGAGATGGGTCTTGTTGAAGAAGCTTTGCGGGTGTATGGCAGCATTGGGGTGTTGCCTGCAACCCAGGCTTGTAATGCGCTCTTGGATGGGTTGGTGAAGACGGGTCGGATTGATTCGATGTGGGAGCTTTATAATGATATGGGCTCTCGTGGATTAAGACCTAGTTGTGTTACATATGGGGTGTTAATTGAGGGTAGTTGTAAGAAAGGCGATCTCGTGAATGCACGTAAGGTGTTCGATGAAATGCCTGAGAGAGGGATTGAAAGGACAGTTGTGGTGTATACGTCTCTTATTCGTGGGCTGTGCAATGAGGGGAGGATGGTGGAAGCTGACAGCATTTTTCGGACGATGAGGAAAGATGGTGTGATACCAAATCTGTGGACTTACAATTGTCTGATGGATGGGTATTGCAAAGTGGCTGATGTCAAACAAGCCCTTGTGTTGTACTCGAACTTGCTAGGCGATGGCATGCGGCCGAATGTTGTCACGTTTGGTATTTTGATTGATGCATTTTGCAAAGTAGGTGAACTGATGGCTGCGAGGAGCGTTTTAGTGTGCATGGTTAAGTTTGGTGTTGCGCCTAGTACGTTTGTGTACAATGGTTTGATTTACGGGCATTGTAAGGTGGAAGATGTTTCGGAAGCAATGGATTTGAAATTGGAGATGGAGAAGTATGGTATTCTTCCGGATGTGTTCACTTACAGCATACTAATTAAGGGTCTATGTTCTGTTTGTAGAGTGGAAGAAGCGTATCAGTTGTTGCAAAACATGAAGAAGGAGGGAGTTGCTGCAAATGCTGTTACGTACAATTCACTAATCGATGGGTATTGTAAAGATCGCAATATGGAGAAGGCTTTGGAGGTGTGTTCTGAAATGACCAAAATTGGTATAGAACCAAATGTCATCACCTTCTCTACTTTGATCGATGCTTATTGCAAGATGGGGAACATGGAAGCTGCTATGGGTTTGTACTCGGAAATGGTAGTTAAAGGCCTTCTGACTGATATAGTAGCTTACACAGCTTTGATTGATGGCCATTTTAAAATCGGGAACGTGAAAGAGGCTCATCGCCTGCATAAAGAGATGTTGGAGGCAGGCCTCACGCCCAATGTTTTCACTCTTAGTTGCTTGGTAGATGGCCTTGGTAAAAATGGAAAGAGTTCTGATGCAATCAACCTCTTTTCGGAGAAAACCAAAGTCAGTTCCAATACAGATGAAACCAAGGAAATGGATGGCGACTTCTGTTCCCCAAATCATGTGACTTATACAGCTTTAATTCAGGGTCTGTCTGTAGACAGCCGGATTTTCGAGGCAACCAAGTTCTTTTTGGATATGAGAGTCAGTGGTTTGAGACCAGATGCATTCACTTACATTGTCATGTTAAAGGGCCACTTCCAAGCGAAGCATACGCTTGGCGTGATGATGCTGCATGCAGATATGATGAAGACGGGTATCATTCCCAGTATAGATATACGTCCGGTGTTATGTAGGGCTTACCAAGAAATTGGTGACCTAAAATCAGCAGCTAAGTTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

634

Amino Acids

70.23

Weight (kDa)

8.33

Isoelectric Point (pI)

28.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	143 - 190	3.7e-13	PPR repeat family
PPR_3	PF13812	165 - 220	1.2e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	165 - 298	8.7e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	172 - 204	6.7e-10	PPR repeat
PPR_2	PF13041	176 - 225	7.2e-13	PPR repeat family
PPR	PF01535	179 - 209	1.7e-06	PPR repeat
PPR_3	PF13812	199 - 258	4.4e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	207 - 240	2e-07	PPR repeat
PPR_2	PF13041	212 - 260	5.3e-16	PPR repeat family
PPR	PF01535	214 - 244	1.8e-07	PPR repeat
PPR_1	PF12854	243 - 270	1.7e-06	PPR repeat
PPR_2	PF13041	246 - 295	2.8e-14	PPR repeat family
PPR_3	PF13812	273 - 325	6.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	277 - 310	2e-08	PPR repeat
PPR_2	PF13041	281 - 329	2.6e-09	PPR repeat family
PPR_2	PF13041	316 - 364	2.6e-16	PPR repeat family
PPR_1	PF12854	348 - 380	1.9e-10	PPR repeat
PPR	PF01535	354 - 384	7.3e-06	PPR repeat
PPR_2	PF13041	359 - 400	3e-13	PPR repeat family
PPR_long	PF17177	369 - 479	3.6e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	375 - 435	6.2e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	383 - 415	4.6e-11	PPR repeat
PPR_2	PF13041	387 - 435	6.1e-19	PPR repeat family
PPR	PF01535	389 - 419	1e-09	PPR repeat
PPR_1	PF12854	418 - 450	1.1e-11	PPR repeat
PPR_2	PF13041	421 - 462	8.8e-11	PPR repeat family
PPR	PF01535	424 - 454	1.7e-08	PPR repeat
PPR_3	PF13812	446 - 505	3.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	452 - 484	6.6e-06	PPR repeat
PPR_2	PF13041	457 - 505	1.1e-13	PPR repeat family
PPR	PF01535	459 - 489	2.3e-06	PPR repeat
PPR_1	PF12854	488 - 518	1.6e-06	PPR repeat
PPR_2	PF13041	539 - 586	8.9e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61400
fragaria_vesca	FvH4_5g14610
prunus_persica	Prupe.5G197300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181881
rosa_laevigata	RLG00000005166
rosa_multiflora	Rmu_co8156836.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271670
rosa_rugosa	Rorug06G0444800
rosa_samantha	Rh7AG047000 Rh7BG046600 Rh7CG047100 Rh7DG046200
rosa_wichuraiana	Rw7G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AccI	GTMKAC	2 cut(s)	647, 1659
AccIII	TCCGGA	1 cut(s)	1051
AciI	CCGC	3 cut(s)	268, 394, 838
AclWI	GGATC	1 cut(s)	162
AcoI	YGGCCR	3 cut(s)	60, 839, 1399
AcuI	CTGAAG	2 cut(s)	143, 233
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	5 cut(s)	812, 952, 962, 1172, 1337
AfiI	CCNNNNNNNGG	2 cut(s)	620, 1549
AgsI	TTSAA	5 cut(s)	7, 121, 383, 629, 1021
AjnI	CCWGG	2 cut(s)	215, 429
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	2 cut(s)	657, 1711
AlwI	GGATC	1 cut(s)	162
AlwNI	CAGNNNCTG	1 cut(s)	1651
Aor13HI	TCCGGA	1 cut(s)	1051
AoxI	GGCC	7 cut(s)	60, 839, 1357, 1399, 1462, 1504, 1753
ApeKI	GCWGC	6 cut(s)	405, 902, 1154, 1322, 1792, 1889
Asp700I	GAANNNNTTC	2 cut(s)	338, 1525
AspLEI	GCGC	3 cut(s)	146, 445, 946
AspS9I	GGNCC	1 cut(s)	1753
AsuHPI	GGTGA	5 cut(s)	61, 472, 902, 1264, 1886
BalI	TGGCCA	1 cut(s)	1401
BanII	GRGCYC	2 cut(s)	117, 512
BauI	CACGAG	2 cut(s)	513, 581
BbsI	GAAGAC	2 cut(s)	470, 1817
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	6 cut(s)	417, 889, 1141, 1309, 1779, 1901
BceAI	ACGGC	2 cut(s)	255, 288
BciT130I	CCWGG	2 cut(s)	217, 431
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	657, 1711
BfaI	CTAG	5 cut(s)	242, 318, 528, 824, 948
BfmI	CTRYAG	2 cut(s)	99, 1656
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	7 cut(s)	406, 839, 903, 1155, 1323, 1793, 1890
BlsI	GCNGC	7 cut(s)	407, 840, 904, 1156, 1324, 1794, 1891
Bme1390I	CCNGG	2 cut(s)	217, 431
BmgT120I	GGNCC	1 cut(s)	1753
BmrFI	CCNGG	2 cut(s)	217, 431
BmrI	ACTGGG	1 cut(s)	1821
BmsI	GCATC	5 cut(s)	862, 1282, 1522, 1714, 1779
BmuI	ACTGGG	1 cut(s)	1821
BpiI	GAAGAC	2 cut(s)	470, 1817
Bsa29I	ATCGAT	2 cut(s)	1185, 1290
BsaAI	YACGTR	2 cut(s)	593, 1170
BsaHI	GRCGYC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	1711
BsaJI	CCNNGG	3 cut(s)	429, 1507, 1587
BsaWI	WCCGGW	3 cut(s)	24, 1051, 1843
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 1549
Bse1I	ACTGG	1 cut(s)	1827
Bse3DI	GCAATG	3 cut(s)	354, 679, 1017
BseAI	TCCGGA	1 cut(s)	1051
BseBI	CCWGG	2 cut(s)	217, 431
BseCI	ATCGAT	2 cut(s)	1185, 1290
BseDI	CCNNGG	3 cut(s)	429, 1507, 1587
BseGI	GGATG	5 cut(s)	457, 690, 772, 1060, 1603
BseLI	CCNNNNNNNGG	2 cut(s)	620, 1549
BseMI	GCAATG	3 cut(s)	354, 679, 1017
BseMII	CTCAG	2 cut(s)	357, 606
BseNI	ACTGG	1 cut(s)	1827
BseRI	GAGGAG	1 cut(s)	922
BseX3I	CGGCCG	2 cut(s)	60, 839
BseXI	GCAGC	6 cut(s)	417, 889, 1141, 1309, 1779, 1901
Bsh1285I	CGRYCG	2 cut(s)	63, 842
BshFI	GGCC	7 cut(s)	62, 841, 1359, 1401, 1464, 1506, 1755
BshVI	ATCGAT	2 cut(s)	1185, 1290
BsiEI	CGRYCG	2 cut(s)	63, 842
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	4 cut(s)	25, 1052, 1666, 1844
BslI	CCNNNNNNNGG	2 cut(s)	620, 1549
BsmAI	GTCTC	2 cut(s)	657, 1711
BsmBI	CGTCTC	1 cut(s)	657
BsmI	GAATGC	3 cut(s)	44, 592, 1727
BsnI	GGCC	7 cut(s)	62, 841, 1359, 1401, 1464, 1506, 1755
Bso31I	GGTCTC	1 cut(s)	1711
Bsp1286I	GDGCHC	2 cut(s)	117, 512
Bsp13I	TCCGGA	1 cut(s)	1051
Bsp1407I	TGTACA	1 cut(s)	960
Bsp143I	GATC	6 cut(s)	154, 244, 351, 577, 1201, 1287
BspACI	CCGC	3 cut(s)	268, 394, 838
BspANI	GGCC	7 cut(s)	62, 841, 1359, 1401, 1464, 1506, 1755
BspCNI	CTCAG	2 cut(s)	358, 607
BspDI	ATCGAT	2 cut(s)	1185, 1290
BspEI	TCCGGA	1 cut(s)	1051
BspPI	GGATC	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	1711
BsrDI	GCAATG	3 cut(s)	354, 679, 1017
BsrGI	TGTACA	1 cut(s)	960
BsrI	ACTGG	1 cut(s)	1827
BssECI	CCNNGG	3 cut(s)	429, 1507, 1587
BssMI	GATC	6 cut(s)	154, 244, 351, 577, 1201, 1287
BssNAI	GTATAC	1 cut(s)	648
BssNI	GRCGYC	1 cut(s)	128
BssSI	CACGAG	2 cut(s)	513, 581
BssT1I	CCWWGG	2 cut(s)	1507, 1587
Bst1107I	GTATAC	1 cut(s)	648
Bst2BI	CACGAG	2 cut(s)	513, 581
Bst2UI	CCWGG	2 cut(s)	217, 431
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	2 cut(s)	38, 122
BstACI	GRCGYC	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	960
BstBAI	YACGTR	2 cut(s)	593, 1170
BstC8I	GCNNGC	5 cut(s)	423, 836, 1439, 1462, 1797
BstDEI	CTNAG	6 cut(s)	283, 299, 366, 615, 1487, 1893
BstEII	GGTNACC	1 cut(s)	1874
BstENI	CCTNNNNNAGG	1 cut(s)	618
BstF5I	GGATG	5 cut(s)	457, 690, 772, 1060, 1603
BstHHI	GCGC	3 cut(s)	146, 445, 946
BstKTI	GATC	6 cut(s)	157, 247, 354, 580, 1204, 1290
BstMAI	GTCTC	2 cut(s)	657, 1711
BstMBI	GATC	6 cut(s)	154, 244, 351, 577, 1201, 1287
BstMCI	CGRYCG	2 cut(s)	63, 842
BstMWI	GCNNNNNNNGC	5 cut(s)	267, 431, 440, 1160, 1385
BstNI	CCWGG	2 cut(s)	217, 431
BstNSI	RCATGY	2 cut(s)	838, 1799
BstPI	GGTNACC	1 cut(s)	1874
BstSCI	CCNGG	2 cut(s)	215, 429
BstSFI	CTRYAG	2 cut(s)	99, 1656
BstSNI	TACGTA	1 cut(s)	1170
BstV1I	GCAGC	6 cut(s)	417, 889, 1141, 1309, 1779, 1901
BstV2I	GAAGAC	2 cut(s)	470, 1817
BstX2I	RGATCY	2 cut(s)	154, 244
BstXI	CCANNNNNNTGG	3 cut(s)	744, 1594, 1871
BstYI	RGATCY	2 cut(s)	154, 244
BstZ17I	GTATAC	1 cut(s)	648
BstZI	CGGCCG	2 cut(s)	60, 839
Bsu15I	ATCGAT	2 cut(s)	1185, 1290
BsuRI	GGCC	7 cut(s)	62, 841, 1359, 1401, 1464, 1506, 1755
BsuTUI	ATCGAT	2 cut(s)	1185, 1290
BtgZI	GCGATG	2 cut(s)	843, 1418
BtsCI	GGATG	5 cut(s)	457, 690, 772, 1060, 1603
BtsIMutI	CAGTG	1 cut(s)	1714
Cac8I	GCNNGC	5 cut(s)	423, 836, 1439, 1462, 1797
CaiI	CAGNNNCTG	1 cut(s)	1651
CfoI	GCGC	3 cut(s)	146, 445, 946
Cfr13I	GGNCC	1 cut(s)	1753
ClaI	ATCGAT	2 cut(s)	1185, 1290
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	5 cut(s)	811, 951, 961, 1171, 1336
CviAII	CATG	8 cut(s)	182, 835, 925, 1135, 1315, 1622, 1744, 1796
CviQI	GTAC	5 cut(s)	811, 951, 961, 1171, 1336
DdeI	CTNAG	6 cut(s)	283, 299, 366, 615, 1487, 1893
DpnI	GATC	6 cut(s)	156, 246, 353, 579, 1203, 1289
DpnII	GATC	6 cut(s)	154, 244, 351, 577, 1201, 1287
DraI	TTTAAA	1 cut(s)	1408
EaeI	YGGCCR	3 cut(s)	60, 839, 1399
EagI	CGGCCG	2 cut(s)	60, 839
Eam1104I	CTCTTC	2 cut(s)	38, 122
EarI	CTCTTC	2 cut(s)	38, 122
Ecl136II	GAGCTC	1 cut(s)	115
EclXI	CGGCCG	2 cut(s)	60, 839
Eco105I	TACGTA	1 cut(s)	1170
Eco130I	CCWWGG	2 cut(s)	1507, 1587
Eco147I	AGGCCT	2 cut(s)	1359, 1464
Eco24I	GRGCYC	2 cut(s)	117, 512
Eco31I	GGTCTC	1 cut(s)	1711
Eco52I	CGGCCG	2 cut(s)	60, 839
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	143, 233
Eco91I	GGTNACC	1 cut(s)	1874
EcoICRI	GAGCTC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	618
EcoO65I	GGTNACC	1 cut(s)	1874
EcoRII	CCWGG	2 cut(s)	215, 429
EcoT14I	CCWWGG	2 cut(s)	1507, 1587
EcoT22I	ATGCAT	2 cut(s)	877, 1729
EcoT38I	GRGCYC	2 cut(s)	117, 512
ErhI	CCWWGG	2 cut(s)	1507, 1587
Esp3I	CGTCTC	1 cut(s)	657
FaeI	CATG	8 cut(s)	185, 838, 928, 1138, 1318, 1625, 1747, 1799
FalI	AAGNNNNNCTT	2 cut(s)	1742, 1774
FatI	CATG	8 cut(s)	181, 834, 924, 1134, 1314, 1621, 1743, 1795
FauI	CCCGC	2 cut(s)	275, 387
FauNDI	CATATG	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	351
FblI	GTMKAC	2 cut(s)	647, 1659
Fnu4HI	GCNGC	7 cut(s)	406, 839, 903, 1155, 1323, 1793, 1890
FokI	GGATG	5 cut(s)	464, 697, 779, 1067, 1610
FriOI	GRGCYC	2 cut(s)	117, 512
Fsp4HI	GCNGC	7 cut(s)	406, 839, 903, 1155, 1323, 1793, 1890
FspBI	CTAG	5 cut(s)	242, 318, 528, 824, 948
GlaI	GCGC	3 cut(s)	145, 444, 945
GluI	GCNGC	7 cut(s)	406, 839, 903, 1155, 1323, 1793, 1890
HaeIII	GGCC	7 cut(s)	62, 841, 1359, 1401, 1464, 1506, 1755
HapII	CCGG	4 cut(s)	25, 1052, 1666, 1844
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	3 cut(s)	146, 445, 946
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	8 cut(s)	185, 838, 928, 1138, 1318, 1625, 1747, 1799
Hin6I	GCGC	3 cut(s)	144, 443, 944
HinP1I	GCGC	3 cut(s)	144, 443, 944
HindIII	AAGCTT	2 cut(s)	8, 387
HinfI	GANTC	3 cut(s)	321, 479, 1704
HpaII	CCGG	4 cut(s)	25, 1052, 1666, 1844
HphI	GGTGA	5 cut(s)	61, 472, 902, 1264, 1886
Hpy166II	GTNNAC	7 cut(s)	289, 648, 747, 893, 961, 1062, 1660
Hpy188III	TCNNGA	4 cut(s)	318, 583, 1052, 1414
Hpy8I	GTNNAC	7 cut(s)	289, 648, 747, 893, 961, 1062, 1660
Hpy99I	CGWCG	2 cut(s)	61, 133
HpyAV	CCTTC	5 cut(s)	145, 1135, 1210, 1285, 1370
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	7 cut(s)	592, 650, 854, 953, 1169, 1419, 1840
HpyF10VI	GCNNNNNNNGC	5 cut(s)	267, 431, 440, 1160, 1385
HpyF3I	CTNAG	6 cut(s)	283, 299, 366, 615, 1487, 1893
HpySE526I	ACGT	7 cut(s)	592, 650, 854, 953, 1169, 1419, 1840
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	8 cut(s)	185, 838, 928, 1138, 1318, 1625, 1747, 1799
HspAI	GCGC	3 cut(s)	144, 443, 944
Kpn2I	TCCGGA	1 cut(s)	1051
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	6 cut(s)	154, 244, 351, 577, 1201, 1287
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	490, 909
Lsp1109I	GCAGC	6 cut(s)	417, 889, 1141, 1309, 1779, 1901
LweI	GCATC	5 cut(s)	862, 1282, 1522, 1714, 1779
MaeI	CTAG	5 cut(s)	242, 318, 528, 824, 948
MaeII	ACGT	7 cut(s)	592, 650, 854, 953, 1169, 1419, 1840
MaeIII	GTNAC	6 cut(s)	278, 535, 850, 1165, 1624, 1874
MalI	GATC	6 cut(s)	156, 246, 353, 579, 1203, 1289
MboI	GATC	6 cut(s)	154, 244, 351, 577, 1201, 1287
MfeI	CAATTG	1 cut(s)	754
MflI	RGATCY	2 cut(s)	154, 244
MhlI	GDGCHC	2 cut(s)	117, 512
MlsI	TGGCCA	1 cut(s)	1401
MluNI	TGGCCA	1 cut(s)	1401
MlyI	GAGTC	1 cut(s)	1713
MmeI	TCCRAC	2 cut(s)	452, 1434
Mox20I	TGGCCA	1 cut(s)	1401
Mph1103I	ATGCAT	2 cut(s)	877, 1729
MroI	TCCGGA	1 cut(s)	1051
MroXI	GAANNNNTTC	2 cut(s)	338, 1525
MscI	TGGCCA	1 cut(s)	1401
MseI	TTAA	9 cut(s)	210, 521, 551, 930, 1080, 1353, 1407, 1640, 1748
MslI	CAYNNNNRTG	2 cut(s)	413, 1742
Msp20I	TGGCCA	1 cut(s)	1401
MspI	CCGG	4 cut(s)	25, 1052, 1666, 1844
MspR9I	CCNGG	2 cut(s)	217, 431
MunI	CAATTG	1 cut(s)	754
Mva1269I	GAATGC	3 cut(s)	44, 592, 1727
MvaI	CCWGG	2 cut(s)	217, 431
MwoI	GCNNNNNNNGC	5 cut(s)	267, 431, 440, 1160, 1385
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	6 cut(s)	154, 244, 351, 577, 1201, 1287
NlaIII	CATG	8 cut(s)	185, 838, 928, 1138, 1318, 1625, 1747, 1799
NmuCI	GTSAC	4 cut(s)	278, 850, 1624, 1874
NsiI	ATGCAT	2 cut(s)	877, 1729
NspI	RCATGY	2 cut(s)	838, 1799
PaeI	GCATGC	2 cut(s)	838, 1799
PceI	AGGCCT	2 cut(s)	1359, 1464
PciSI	GCTCTTC	1 cut(s)	122
PctI	GAATGC	3 cut(s)	44, 592, 1727
PdmI	GAANNNNTTC	2 cut(s)	338, 1525
PfeI	GAWTC	2 cut(s)	321, 479
PkrI	GCNGC	7 cut(s)	407, 840, 904, 1156, 1324, 1794, 1891
PleI	GAGTC	1 cut(s)	1712
PpsI	GAGTC	1 cut(s)	1712
Ppu21I	YACGTR	2 cut(s)	593, 1170
PsiI	TTATAA	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	215, 429
PspEI	GGTNACC	1 cut(s)	1874
PspGI	CCWGG	2 cut(s)	215, 429
PspPI	GGNCC	1 cut(s)	1753
PstNI	CAGNNNCTG	1 cut(s)	1651
PsuI	RGATCY	2 cut(s)	154, 244
RsaI	GTAC	5 cut(s)	812, 952, 962, 1172, 1337
RsaNI	GTAC	5 cut(s)	811, 951, 961, 1171, 1336
RseI	CAYNNNNRTG	2 cut(s)	413, 1742
SacI	GAGCTC	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	9 cut(s)	210, 521, 551, 930, 1080, 1353, 1407, 1640, 1748
SatI	GCNGC	7 cut(s)	406, 839, 903, 1155, 1323, 1793, 1890
Sau3AI	GATC	6 cut(s)	154, 244, 351, 577, 1201, 1287
Sau96I	GGNCC	1 cut(s)	1753
SchI	GAGTC	1 cut(s)	1713
ScrFI	CCNGG	2 cut(s)	217, 431
SduI	GDGCHC	2 cut(s)	117, 512
SfaNI	GCATC	5 cut(s)	862, 1282, 1522, 1714, 1779
SfcI	CTRYAG	2 cut(s)	99, 1656
SmiMI	CAYNNNNRTG	2 cut(s)	413, 1742
SnaBI	TACGTA	1 cut(s)	1170
SphI	GCATGC	2 cut(s)	838, 1799
SseBI	AGGCCT	2 cut(s)	1359, 1464
SsiI	CCGC	3 cut(s)	268, 394, 838
SspMI	CTAG	5 cut(s)	242, 318, 528, 824, 948
SstI	GAGCTC	1 cut(s)	117
StuI	AGGCCT	2 cut(s)	1359, 1464
StyD4I	CCNGG	2 cut(s)	215, 429
StyI	CCWWGG	2 cut(s)	1507, 1587
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	7 cut(s)	595, 653, 857, 956, 1172, 1422, 1843
TaqI	TCGA	7 cut(s)	131, 482, 603, 815, 1185, 1290, 1674
TatI	WGTACW	3 cut(s)	810, 960, 1335
TauI	GCSGC	1 cut(s)	841
TfiI	GAWTC	2 cut(s)	321, 479
Tru1I	TTAA	9 cut(s)	210, 521, 551, 930, 1080, 1353, 1407, 1640, 1748
Tru9I	TTAA	9 cut(s)	210, 521, 551, 930, 1080, 1353, 1407, 1640, 1748
TscAI	CASTG	1 cut(s)	1714
TseFI	GTSAC	4 cut(s)	278, 850, 1624, 1874
TseI	GCWGC	6 cut(s)	405, 902, 1154, 1322, 1792, 1889
Tsp45I	GTSAC	4 cut(s)	278, 850, 1624, 1874
TspDTI	ATGAA	6 cut(s)	42, 155, 621, 1151, 1596, 1823
TspRI	CASTG	1 cut(s)	1714
XagI	CCTNNNNNAGG	1 cut(s)	618
XbaI	TCTAGA	1 cut(s)	317
XceI	RCATGY	2 cut(s)	838, 1799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1690
XmiI	GTMKAC	2 cut(s)	647, 1659
XmnI	GAANNNNTTC	2 cut(s)	338, 1525
XspI	CTAG	5 cut(s)	242, 318, 528, 824, 948
Zsp2I	ATGCAT	2 cut(s)	877, 1729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.