Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011561

Physical Location & Seq

Genomic Coordinates Forward (+)

17363714 .. 17364960

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G224000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCCATCTTCTCTAGGTTCCCACACTGTCTCACATACTTCTGCAACAGACTCAGAACCTGTGAGGTTTGTTCATACTTCAGAGGCCCGCCGTTTGCTTCCTTCCGCAAGTCGTTGGAATTCTATAGAAATTGACTTTAACCTTCTTCCTCAGTCTACCATGGCCAACGATTCAATCCCTTCTCAGTACTCCAAGTCCTACCAATACAATCTTGTTATCACAGATAAAAAGTACTTTAAACGTTGTCTTTACATTTCTGTCTCCACAGTTTTTCTTATCCTAGCTCTACTTTTACTGCTACACTTTTTGCCCTCAAAACATCATCACGATCGTCCTTCAAAGAATCTTACACTTGCATTGAACCAAGCTCTAACGTTCTTCGATGCTCAAAAGTCTGGGGTGTACCCCAATAACAGTCCGGTGAAATTTCGAGCAAGTTCAGGATTGCAAGATGGGAACTCAGGCAGTAAACCAGTTAATCTTGAGGGTGGTTTCTATGATTCTGGCAACAACATAAAATTCAGCTTCCCTACAGCTTATACTGTAACCCTGTTGAGTTGGAGTGTGATTGAATATCATGACAAGTATGCTGATATTGGTGAGCTTGATCATGTCAAGGACATAATCAAATGGGGAAGTGATTATTTGCTCAAACTCTTTGTTCCCCCTCACACAACTTCAGATACCATATTGTATTCTCAGGCAAGCCTTATGAACAATTTTATTGGAAGTGCAAACAGCGATGCCAAGGTTCCTAATGATATAAACTGCTGGCAAAGACCTGAAGACATGGACTACAAGAGAACCGTTTCATTTTGCGATAACACAGCTTCCGATTTAGCAGGGGAAATTGTTGCAGCATTATCAGCTGCTTCATTAGTGTTCAAAGAAGACAATGTTTACTCAGGAGAATTAGTCACAGCAGCTGAGAAGCTATTTGAGAGTGCAATTACTAAGCTAGACCCTGCTAGGCAAGGAACATACACTAAGGTTGATGCTTGTGGAGGAGAAGCTAGAAATTTTTATAACTCATCTGGTCACCAAGATGAACTGGTT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

352

Amino Acids

39.06

Weight (kDa)

5.87

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11730 FvH4_5g11730 FvH4_5g11730 FvH4_5g11730 FvH4_5g11730
malus_domestica	MD14G1229100.v1.1
prunus_persica	Prupe.5G224000_v2.0.a1
pyrus_communis	pycom14g19020
rosa_chinensis	RchiOBHm_Chr7g0186031
rosa_laevigata	RLG00000004871
rosa_multiflora	Rmu_co8323287.1_g000001 Rmu_co8360925.1_g000001 Rmu_sc0000194.1_g000020
rosa_roxburghii	Rroxscaffold_3G00268490
rosa_rugosa	Rorug06G0471800
rosa_samantha	Rh7AG070200 Rh7BG086200 Rh7CG078100 Rh7DG078100
rosa_wichuraiana	Rw7G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1026
AccI	GTMKAC	1 cut(s)	155
AciI	CCGC	2 cut(s)	88, 105
AclI	AACGTT	2 cut(s)	241, 374
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	4 cut(s)	118, 425, 518, 1018
AcuI	CTGAAG	3 cut(s)	63, 663, 804
AfaI	GTAC	3 cut(s)	188, 233, 404
AgsI	TTSAA	5 cut(s)	174, 339, 361, 572, 886
Alw26I	GTCTC	2 cut(s)	34, 265
AlwNI	CAGNNNCTG	2 cut(s)	59, 926
AoxI	GGCC	2 cut(s)	84, 162
ApeKI	GCWGC	3 cut(s)	857, 869, 923
ApoI	RAATTY	4 cut(s)	118, 425, 518, 1018
Asp700I	GAANNNNTTC	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	3 cut(s)	433, 611, 1031
BalI	TGGCCA	1 cut(s)	164
BbsI	GAAGAC	2 cut(s)	792, 897
BbvI	GCAGC	3 cut(s)	856, 869, 935
BccI	CCATC	2 cut(s)	13, 446
BceAI	ACGGC	1 cut(s)	75
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	2 cut(s)	34, 265
BfaI	CTAG	5 cut(s)	14, 281, 959, 969, 1014
BfmI	CTRYAG	2 cut(s)	123, 531
BisI	GCNGC	3 cut(s)	858, 870, 924
BlsI	GCNGC	3 cut(s)	859, 871, 925
BmcAI	AGTACT	2 cut(s)	188, 233
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	19, 753
BmsI	GCATC	3 cut(s)	373, 733, 985
BpiI	GAAGAC	2 cut(s)	792, 897
BpuEI	CTTGAG	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	159, 747
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	900, 930
Bse1I	ACTGG	2 cut(s)	473, 1056
BseDI	CCNNGG	2 cut(s)	159, 747
BseMII	CTCAG	7 cut(s)	66, 164, 197, 474, 713, 918, 918
BseNI	ACTGG	2 cut(s)	473, 1056
BseRI	GAGGAG	1 cut(s)	1020
BseXI	GCAGC	3 cut(s)	856, 869, 935
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	86, 164
BsiEI	CGRYCG	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	419
BsmAI	GTCTC	2 cut(s)	34, 265
BsnI	GGCC	2 cut(s)	86, 164
Bsp143I	GATC	2 cut(s)	328, 607
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	2 cut(s)	88, 105
BspANI	GGCC	2 cut(s)	86, 164
BspCNI	CTCAG	7 cut(s)	65, 163, 196, 473, 712, 917, 919
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	2 cut(s)	19, 753
BsrI	ACTGG	2 cut(s)	473, 1056
BssECI	CCNNGG	2 cut(s)	159, 747
BssMI	GATC	2 cut(s)	328, 607
BssT1I	CCWWGG	2 cut(s)	159, 747
Bst4CI	ACNGT	5 cut(s)	28, 268, 416, 544, 808
BstC8I	GCNNGC	3 cut(s)	88, 706, 773
BstDEI	CTNAG	9 cut(s)	52, 150, 183, 460, 699, 904, 927, 954, 987
BstDSI	CCRYGG	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	1037
BstKTI	GATC	2 cut(s)	331, 610
BstMAI	GTCTC	2 cut(s)	34, 265
BstMBI	GATC	2 cut(s)	328, 607
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	866
BstPI	GGTNACC	1 cut(s)	1037
BstSFI	CTRYAG	2 cut(s)	123, 531
BstV1I	GCAGC	3 cut(s)	856, 869, 935
BstV2I	GAAGAC	2 cut(s)	792, 897
BsuRI	GGCC	2 cut(s)	86, 164
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	756
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	88, 706, 773
CaiI	CAGNNNCTG	2 cut(s)	59, 926
CciI	TCATGA	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	187, 232, 403
CviAII	CATG	4 cut(s)	160, 578, 611, 790
CviQI	GTAC	3 cut(s)	187, 232, 403
DdeI	CTNAG	9 cut(s)	52, 150, 183, 460, 699, 904, 927, 954, 987
DpnI	GATC	2 cut(s)	330, 609
DpnII	GATC	2 cut(s)	328, 607
DraI	TTTAAA	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	159, 747
Eco57I	CTGAAG	3 cut(s)	63, 663, 804
Eco91I	GGTNACC	1 cut(s)	1037
EcoO65I	GGTNACC	1 cut(s)	1037
EcoRI	GAATTC	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	159, 747
ErhI	CCWWGG	2 cut(s)	159, 747
FaeI	CATG	4 cut(s)	163, 581, 614, 793
FatI	CATG	4 cut(s)	159, 577, 610, 789
FauI	CCCGC	1 cut(s)	95
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	3 cut(s)	858, 870, 924
Fsp4HI	GCNGC	3 cut(s)	858, 870, 924
FspBI	CTAG	5 cut(s)	14, 281, 959, 969, 1014
GluI	GCNGC	3 cut(s)	858, 870, 924
HaeIII	GGCC	2 cut(s)	86, 164
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	4 cut(s)	163, 581, 614, 793
HinfI	GANTC	4 cut(s)	50, 170, 343, 500
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	3 cut(s)	433, 611, 1031
Hpy166II	GTNNAC	4 cut(s)	156, 403, 470, 901
Hpy188I	TCNGA	4 cut(s)	55, 82, 682, 835
Hpy188III	TCNNGA	5 cut(s)	326, 441, 482, 578, 906
Hpy8I	GTNNAC	4 cut(s)	156, 403, 470, 901
HpyAV	CCTTC	4 cut(s)	111, 152, 189, 345
HpyCH4III	ACNGT	5 cut(s)	28, 268, 416, 544, 808
HpyCH4IV	ACGT	2 cut(s)	241, 374
HpyCH4V	TGCA	6 cut(s)	44, 356, 448, 734, 857, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	866
HpyF3I	CTNAG	9 cut(s)	52, 150, 183, 460, 699, 904, 927, 954, 987
HpySE526I	ACGT	2 cut(s)	241, 374
Hsp92II	CATG	4 cut(s)	163, 581, 614, 793
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	2 cut(s)	328, 607
Lsp1109I	GCAGC	3 cut(s)	856, 869, 935
LweI	GCATC	3 cut(s)	373, 733, 985
MaeI	CTAG	5 cut(s)	14, 281, 959, 969, 1014
MaeII	ACGT	2 cut(s)	241, 374
MaeIII	GTNAC	3 cut(s)	544, 916, 1037
MalI	GATC	2 cut(s)	330, 609
MboI	GATC	2 cut(s)	328, 607
MboII	GAAGA	4 cut(s)	137, 370, 797, 902
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	9 cut(s)	118, 129, 425, 518, 718, 849, 911, 948, 1018
MluNI	TGGCCA	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	95, 539
MnlI	CCTC	7 cut(s)	57, 76, 159, 322, 478, 678, 998
Mox20I	TGGCCA	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	808
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	3 cut(s)	138, 237, 477
MslI	CAYNNNNRTG	1 cut(s)	1044
Msp20I	TGGCCA	1 cut(s)	164
MspA1I	CMGCKG	2 cut(s)	869, 926
MspI	CCGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	866
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	328, 607
NlaIII	CATG	4 cut(s)	163, 581, 614, 793
NlaIV	GGNNCC	2 cut(s)	19, 753
NmuCI	GTSAC	2 cut(s)	916, 1037
PagI	TCATGA	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	808
PfeI	GAWTC	3 cut(s)	170, 343, 500
PkrI	GCNGC	3 cut(s)	859, 871, 925
Ple19I	CGATCG	1 cut(s)	331
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	1026
Psp1406I	AACGTT	2 cut(s)	241, 374
PspEI	GGTNACC	1 cut(s)	1037
PspN4I	GGNNCC	2 cut(s)	19, 753
PspPI	GGNCC	1 cut(s)	85
PstNI	CAGNNNCTG	2 cut(s)	59, 926
PvuI	CGATCG	1 cut(s)	331
PvuII	CAGCTG	2 cut(s)	869, 926
RsaI	GTAC	3 cut(s)	188, 233, 404
RsaNI	GTAC	3 cut(s)	187, 232, 403
RseI	CAYNNNNRTG	1 cut(s)	1044
SaqAI	TTAA	3 cut(s)	138, 237, 477
SatI	GCNGC	3 cut(s)	858, 870, 924
Sau3AI	GATC	2 cut(s)	328, 607
Sau96I	GGNCC	1 cut(s)	85
ScaI	AGTACT	2 cut(s)	188, 233
SchI	GAGTC	1 cut(s)	44
SfaNI	GCATC	3 cut(s)	373, 733, 985
SfcI	CTRYAG	2 cut(s)	123, 531
SmiMI	CAYNNNNRTG	1 cut(s)	1044
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	9 cut(s)	118, 129, 425, 518, 718, 849, 911, 948, 1018
SsiI	CCGC	2 cut(s)	88, 105
SspMI	CTAG	5 cut(s)	14, 281, 959, 969, 1014
StyI	CCWWGG	2 cut(s)	159, 747
TaaI	ACNGT	5 cut(s)	28, 268, 416, 544, 808
TaiI	ACGT	2 cut(s)	244, 377
TaqI	TCGA	2 cut(s)	381, 430
TasI	AATT	9 cut(s)	118, 129, 425, 518, 718, 849, 911, 948, 1018
TatI	WGTACW	2 cut(s)	186, 231
TfiI	GAWTC	3 cut(s)	170, 343, 500
Tru1I	TTAA	3 cut(s)	138, 237, 477
Tru9I	TTAA	3 cut(s)	138, 237, 477
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	916, 1037
TseI	GCWGC	3 cut(s)	857, 869, 923
Tsp45I	GTSAC	2 cut(s)	916, 1037
TspDTI	ATGAA	4 cut(s)	62, 728, 801, 864
TspRI	CASTG	1 cut(s)	31
XapI	RAATTY	4 cut(s)	118, 425, 518, 1018
XmiI	GTMKAC	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	808
XspI	CTAG	5 cut(s)	14, 281, 959, 969, 1014
ZrmI	AGTACT	2 cut(s)	188, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.