Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8323287.1

Orthogroup ID

OG0011561

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 944

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8323287.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggattatcagagacctgtttcaatttgtgatagcacagctaccgatttagcaggggaaattgttgcagcattatctgctgcttcattagtatttaaagacgacgacagtgtttactcaggagaattagtgaaagcagctggggagctatttgagagtgcaactaaagaccctaataatcaaggaacttacaccagggttgaaacttgtggaggagaatctagagacttttataactcatctggttataaagacgaattagtttggggaggaacttggttattttttgctaccggtgacatttcatatctgcaatatgccacagacaagtttcaggctgcagttgatgatgaaacaagttctgataaatggattttcgattggaacaacaagctcactgctaacatggtgttgctaacgcgtcttcaattctttcatgatcttggctacccgtatgaagcctctttaaaggcatcatccaacatgactggctcgcttatgtgttcttatgtttctcgtcgagtcttcagcatgacaccaggtgggttggtcatccaaaggcctgattatggggcacctctccagtttgctgcaacagcatctttccttagtaaattgtacggcgactaccttgatcttctgcgtagttctggtggcagtggcagcacttgtgaatttaccgta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

228

Amino Acids

24.99

Weight (kDa)

4.42

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11730 FvH4_5g11730 FvH4_5g11730 FvH4_5g11730 FvH4_5g11730
malus_domestica	MD14G1229100.v1.1
prunus_persica	Prupe.5G224000_v2.0.a1
pyrus_communis	pycom14g19020
rosa_chinensis	RchiOBHm_Chr7g0186031
rosa_laevigata	RLG00000004871
rosa_multiflora	Rmu_co8323287.1_g000001 Rmu_co8360925.1_g000001 Rmu_sc0000194.1_g000020
rosa_roxburghii	Rroxscaffold_3G00268490
rosa_rugosa	Rorug06G0471800
rosa_samantha	Rh7AG070200 Rh7BG086200 Rh7CG078100 Rh7DG078100
rosa_wichuraiana	Rw7G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	234, 249
AccB1I	GGYRCC	1 cut(s)	574
AccII	CGCG	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	674
AcuI	CTGAAG	1 cut(s)	511
AdeI	CACNNNGTG	1 cut(s)	542
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	1 cut(s)	569
AflIII	ACRYGT	1 cut(s)	419
AgeI	ACCGGT	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	24, 203, 428
AjnI	CCWGG	2 cut(s)	194, 538
AluBI	AGCT	4 cut(s)	41, 140, 148, 394
AluI	AGCT	4 cut(s)	41, 140, 148, 394
Alw26I	GTCTC	2 cut(s)	7, 219
AoxI	GGCC	1 cut(s)	560
ApeKI	GCWGC	6 cut(s)	68, 80, 137, 338, 590, 663
ApoI	RAATTY	1 cut(s)	674
AsiGI	ACCGGT	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	574
BbsI	GAAGAC	2 cut(s)	416, 517
BbvI	GCAGC	6 cut(s)	67, 80, 149, 325, 577, 675
BceAI	ACGGC	1 cut(s)	637
BciT130I	CCWGG	2 cut(s)	196, 540
BcoDI	GTCTC	2 cut(s)	7, 219
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	6 cut(s)	69, 81, 138, 339, 591, 664
BlsI	GCNGC	6 cut(s)	70, 82, 139, 340, 592, 665
Bme1390I	CCNGG	2 cut(s)	196, 540
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	2 cut(s)	196, 540
BmsI	GCATC	2 cut(s)	482, 608
BpiI	GAAGAC	2 cut(s)	416, 517
BpmI	CTGGAG	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	569
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	493, 583
BseBI	CCWGG	2 cut(s)	196, 540
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	476, 552
BseLI	CCNNNNNNNGG	1 cut(s)	569
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	493, 583
BseRI	GAGGAG	1 cut(s)	228
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	6 cut(s)	67, 80, 149, 325, 577, 675
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	1 cut(s)	562
BshNI	GGYRCC	1 cut(s)	574
BshTI	ACCGGT	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	569
BsmAI	GTCTC	2 cut(s)	7, 219
BsnI	GGCC	1 cut(s)	562
Bso31I	GGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	2 cut(s)	439, 634
BspANI	GGCC	1 cut(s)	562
BspCNI	CTCAG	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	576
BspMAI	CTGCAG	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	574
BspTNI	GGTCTC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	493, 583
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	439, 634
Bst2UI	CCWGG	2 cut(s)	196, 540
Bst4CI	ACNGT	2 cut(s)	110, 682
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	118, 608
BstF5I	GGATG	2 cut(s)	476, 552
BstFNI	CGCG	1 cut(s)	421
BstKTI	GATC	2 cut(s)	442, 637
BstMAI	GTCTC	2 cut(s)	7, 219
BstMBI	GATC	2 cut(s)	439, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 596, 663
BstNI	CCWGG	2 cut(s)	196, 540
BstSCI	CCNGG	2 cut(s)	194, 538
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	577
BstUI	CGCG	1 cut(s)	421
BstV1I	GCAGC	6 cut(s)	67, 80, 149, 325, 577, 675
BstV2I	GAAGAC	2 cut(s)	416, 517
BsuRI	GGCC	1 cut(s)	562
BtsCI	GGATG	2 cut(s)	476, 552
BtsI	GCAGTG	2 cut(s)	396, 664
BtsIMutI	CAGTG	3 cut(s)	115, 396, 664
Cac8I	GCNNGC	1 cut(s)	494
CciI	TCATGA	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	293
CseI	GACGC	1 cut(s)	410
CsiI	ACCWGGT	1 cut(s)	538
Csp6I	GTAC	1 cut(s)	619
CspAI	ACCGGT	1 cut(s)	293
CviAII	CATG	4 cut(s)	406, 437, 484, 532
CviJI	RGCY	9 cut(s)	41, 140, 148, 338, 394, 447, 461, 492, 562
CviKI_1	RGCY	9 cut(s)	41, 140, 148, 338, 394, 447, 461, 492, 562
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	2 cut(s)	118, 608
DpnI	GATC	2 cut(s)	441, 636
DpnII	GATC	2 cut(s)	439, 634
DraI	TTTAAA	2 cut(s)	97, 468
DraIII	CACNNNGTG	1 cut(s)	542
Eco147I	AGGCCT	1 cut(s)	562
Eco31I	GGTCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	511
EcoRII	CCWGG	2 cut(s)	194, 538
FaeI	CATG	4 cut(s)	409, 440, 487, 535
FatI	CATG	4 cut(s)	405, 436, 483, 531
Fnu4HI	GCNGC	6 cut(s)	69, 81, 138, 339, 591, 664
FokI	GGATG	2 cut(s)	463, 539
Fsp4HI	GCNGC	6 cut(s)	69, 81, 138, 339, 591, 664
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	6 cut(s)	69, 81, 138, 339, 591, 664
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	562
HapII	CCGG	1 cut(s)	294
HgaI	GACGC	1 cut(s)	410
Hin1II	CATG	4 cut(s)	409, 440, 487, 535
HinfI	GANTC	2 cut(s)	218, 522
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	12, 364
Hpy188III	TCNNGA	3 cut(s)	120, 222, 437
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	2 cut(s)	107, 522
HpyCH4III	ACNGT	2 cut(s)	110, 682
HpyCH4V	TGCA	5 cut(s)	68, 161, 313, 341, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 596, 663
HpyF3I	CTNAG	2 cut(s)	118, 608
Hsp92II	CATG	4 cut(s)	409, 440, 487, 535
Kzo9I	GATC	2 cut(s)	439, 634
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	6 cut(s)	67, 80, 149, 325, 577, 675
LweI	GCATC	2 cut(s)	482, 608
MabI	ACCWGGT	1 cut(s)	538
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	441, 636
MboI	GATC	2 cut(s)	439, 634
MboII	GAAGA	3 cut(s)	416, 517, 629
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	7 cut(s)	24, 60, 125, 257, 428, 614, 674
MluI	ACGCGT	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	531
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	4 cut(s)	206, 263, 472, 588
MseI	TTAA	2 cut(s)	96, 467
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	2 cut(s)	196, 540
MvaI	CCWGG	2 cut(s)	196, 540
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	3 cut(s)	77, 596, 663
NdeII	GATC	2 cut(s)	439, 634
NlaIII	CATG	4 cut(s)	409, 440, 487, 535
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	296
PagI	TCATGA	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	293
PkrI	GCNGC	6 cut(s)	70, 82, 139, 340, 592, 665
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
PsiI	TTATAA	2 cut(s)	234, 249
Psp6I	CCWGG	2 cut(s)	194, 538
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	2 cut(s)	194, 538
PspN4I	GGNNCC	1 cut(s)	576
PstI	CTGCAG	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
SaqAI	TTAA	2 cut(s)	96, 467
SatI	GCNGC	6 cut(s)	69, 81, 138, 339, 591, 664
Sau3AI	GATC	2 cut(s)	439, 634
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	2 cut(s)	196, 540
SduI	GDGCHC	1 cut(s)	577
SetI	ASST	8 cut(s)	19, 43, 142, 150, 396, 544, 580, 633
SexAI	ACCWGGT	1 cut(s)	538
SfaNI	GCATC	2 cut(s)	482, 608
SfcI	CTRYAG	1 cut(s)	339
Sse9I	AATT	7 cut(s)	24, 60, 125, 257, 428, 614, 674
SseBI	AGGCCT	1 cut(s)	562
SspMI	CTAG	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	562
StyD4I	CCNGG	2 cut(s)	194, 538
TaaI	ACNGT	2 cut(s)	110, 682
TaqI	TCGA	2 cut(s)	378, 520
TasI	AATT	7 cut(s)	24, 60, 125, 257, 428, 614, 674
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	96, 467
Tru9I	TTAA	2 cut(s)	96, 467
TscAI	CASTG	3 cut(s)	115, 403, 664
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	6 cut(s)	68, 80, 137, 338, 590, 663
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	5 cut(s)	75, 294, 366, 425, 471
TspRI	CASTG	3 cut(s)	115, 403, 664
XapI	RAATTY	1 cut(s)	674
XbaI	TCTAGA	1 cut(s)	221
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.