Rroxscaffold_3G00268490

Belongs to the glycosyl hydrolase 9 (cellulase E) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
61574765 .. 61577161
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268490.1

Sequence Viewer

Length: 1803 bp
ATGCCATCTTCACTAGGTTACCAGTCACCTGCAACAGACCAAGAACCCGTGATGTTTGTCCATACAGTTTCGGAGGCACGTCGTAAGCTTCCTTCAGCAAGTCGCTGGAACTCTATAGAAATTGACTTCAATCTTGTTCCTCAATCTGGCATCGCCTATGATTCACTGCCTTCTGGTTACTCCAAGTCCTATGATTACAATATTGTTATTAGAGATAGAAAGCTCTTCAAACGTTGTCTTCACATTTCTGCCTCAATAGTTAGTCTTATCTTAGCTCTAATTTTGCTGCTACTGTTTTTGCCTCACAAGCATCATCACCATGGTCCTTCAAAGAACCTGACACTTGCATTGAACCAAGCTCTAACCTTCTTTGATGCTCAAAAATCTGGGACTTACCCCAAAAATAGTCCAGTAAAATTTCGAGGGGATTCAGGATTGCAAGATGGGAATTTGACCAGTAACAGCGCAAATCTTGTGGGCGGTTTCTATGATTCTGGAAACAACATGAAGTTCAGTTTTTCTACAGCTTATACCATGACCGTGTTAAGTTGGACTGTGATTGAATATCACCAAAAGTATGCTGATATCGGTGAGCTTGACCATGTCAAGGATATAATCAAATGGGGCAGTGATTATTTGCTCAAAATTGGAACTGCAAACAGTGATGGCACGACTCCTAGTGATATAAACTGCTGGGAAAGACCTGAAGACATGGATTATCAGAGACCTGTTTCAATTTGTGATAGTACAGCTACCGATTTAGCAGGGGAAATTGTTGCAGCATTATCTGCTGCTTCATTAGTATTTAAAGACGACAACAGTTTTTTCTCAGGAGAATTAGTGAAAGCAGCTGGGGAGTTATTTGAGAGTGCAACTAAAGACCCTAATAATCAAGGAACTTACACCAGGGTTGAAAGTTGTGGAGGAGAATCTAGAGACTTTTATAACTCATCTGGTTATAAAGATGAATTAGTTTGGGGAGGAACTTGGTTGTTTTTTGCTACTGGTGACATTTCGTATCTGCAATATGCCACAGACAAGTTTCAGGCTGCAGTTGATGATGAAACAAGTTCTGATAAATGGATTTTCGATTGGAACAACAAGCTTACTGCTAACATGGTCTTGCTAACGCGTCTTCAATTCTTTCATGATCTTGGCTACCCGTATGAAGATTCTTTAAAGGCATCATCCAACATGACTGGCTCCCTTATGTGTTCTTATGTTTCTCATCGAGGCTTCAGCATGACACCAGGTGGGTTGGTCATCCAAAGGCCTGATTATGGGGCACCTCTCCAGTTTGCTGCAACAGCATCTTTCCTTAGTAAATTGTACGGCGACTACCTTGATCTTCTGCGTAGTTCTGGTGGCAGTTGCAGCACTTGTGAATTCACTGTGAATTACATTCTAGGAGATAATCCAATGAATATGAGCTACATGGTGGGATTCGGGGACAAGTTTCCGAGCCAAGTACACCATAGAAGTGCATCAATCCCTTGGGATGGTCAACATTACTCGTGTAAAGATGGATATAAATGGCGAGACTCCAAGGATCCAAATCCGAATGTGCTGTTGGGAGCCATGGTAGGAGGACCAGACCAGTTTGACAAATTTATAGATGAGAGGGACAAGCAAGAGTTCACTGAGCCTAGATTAACAAGCAATGCTGGTTTAGTTGCAGCTCTCATTGCACTTCATGATCCTCCTCATCCTAAGAAGAGCAAGAAGAGAGGCAATTATGATCCCACTAAATTGGGCATAGACCAGATGGGTATTTTTGATAAGATTGTACCCCTAGCCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

600

Amino Acids

66.66

Weight (kDa)

5.64

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 116 - 561 1.5e-118 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 945, 960
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 1285
AccII CGCG 1 cut(s) 1132
AciI CCGC 1 cut(s) 480
AclI AACGTT 1 cut(s) 232
AclWI GGATC 4 cut(s) 1544, 1557, 1691, 1733
AcsI RAATTY 4 cut(s) 416, 448, 1385, 1607
AcuI CTGAAG 3 cut(s) 78, 726, 1222
AdeI CACNNNGTG 1 cut(s) 1253
AfaI GTAC 4 cut(s) 748, 1331, 1470, 1788
AfiI CCNNNNNNNGG 4 cut(s) 146, 607, 1280, 1499
AflIII ACRYGT 1 cut(s) 1130
AgsI TTSAA 8 cut(s) 130, 229, 330, 352, 563, 735, 914, 1139
AjiI CACGTC 1 cut(s) 80
AjnI CCWGG 2 cut(s) 905, 1249
AjuI GAANNNNNNNTTGG 2 cut(s) 1553, 1585
Alw26I GTCTC 3 cut(s) 718, 930, 1533
AlwI GGATC 4 cut(s) 1544, 1557, 1691, 1733
AoxI GGCC 1 cut(s) 1271
ApeKI GCWGC 8 cut(s) 286, 779, 791, 848, 1049, 1301, 1374, 1676
ApoI RAATTY 4 cut(s) 416, 448, 1385, 1607
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 323, 1589
AsuHPI GGTGA 5 cut(s) 18, 308, 560, 602, 1019
AvaII GGWCC 2 cut(s) 323, 1589
BaeGI GKGCMC 1 cut(s) 1288
BamHI GGATCC 1 cut(s) 1549
BanI GGYRCC 1 cut(s) 1285
BarI GAAGNNNNNNTAC 2 cut(s) 76, 108
BauI CACGAG 1 cut(s) 1513
BbsI GAAGAC 3 cut(s) 230, 714, 1127
BbvI GCAGC 8 cut(s) 273, 778, 791, 860, 1036, 1288, 1386, 1688
BccI CCATC 6 cut(s) 13, 437, 659, 1493, 1517, 1759
BceAI ACGGC 1 cut(s) 1348
BciT130I CCWGG 2 cut(s) 907, 1251
BcoDI GTCTC 3 cut(s) 718, 930, 1533
BfaI CTAG 6 cut(s) 14, 678, 933, 1406, 1647, 1793
BfmI CTRYAG 3 cut(s) 114, 522, 1050
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 8 cut(s) 287, 780, 792, 849, 1050, 1302, 1375, 1677
BlsI GCNGC 8 cut(s) 288, 781, 793, 850, 1051, 1303, 1376, 1678
Bme1390I CCNGG 2 cut(s) 907, 1251
Bme18I GGWCC 2 cut(s) 323, 1589
BmgBI CACGTC 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 323, 1589
BmiI GGNNCC 4 cut(s) 1204, 1287, 1551, 1576
BmrFI CCNGG 2 cut(s) 907, 1251
BmsI GCATC 6 cut(s) 159, 319, 364, 1193, 1319, 1493
BpiI GAAGAC 3 cut(s) 230, 714, 1127
BpmI CTGGAG 1 cut(s) 1277
BsaBI GATNNNNATC 1 cut(s) 1554
BsaI GGTCTC 1 cut(s) 718
BsaJI CCNNGG 5 cut(s) 319, 906, 1493, 1545, 1578
BsaXI ACNNNNNCTCC 4 cut(s) 825, 855, 1566, 1596
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 607, 1280, 1499
Bse1I ACTGG 7 cut(s) 22, 410, 456, 1009, 1204, 1294, 1597
Bse3DI GCAATG 2 cut(s) 1666, 1683
Bse8I GATNNNNATC 1 cut(s) 1554
BseBI CCWGG 2 cut(s) 907, 1251
BseDI CCNNGG 5 cut(s) 319, 906, 1493, 1545, 1578
BseGI GGATG 4 cut(s) 1187, 1263, 1504, 1705
BseJI GATNNNNATC 1 cut(s) 1554
BseLI CCNNNNNNNGG 4 cut(s) 146, 607, 1280, 1499
BseMI GCAATG 2 cut(s) 1666, 1683
BseMII CTCAG 2 cut(s) 843, 1632
BseNI ACTGG 7 cut(s) 22, 410, 456, 1009, 1204, 1294, 1597
BseRI GAGGAG 2 cut(s) 939, 1692
BseSI GKGCMC 1 cut(s) 1288
BseXI GCAGC 8 cut(s) 273, 778, 791, 860, 1036, 1288, 1386, 1688
BseYI CCCAGC 2 cut(s) 693, 851
Bsh1236I CGCG 1 cut(s) 1132
BshFI GGCC 1 cut(s) 1273
BshNI GGYRCC 1 cut(s) 1285
BslFI GGGAC 3 cut(s) 403, 1463, 1637
BslI CCNNNNNNNGG 4 cut(s) 146, 607, 1280, 1499
BsmAI GTCTC 3 cut(s) 718, 930, 1533
BsmFI GGGAC 3 cut(s) 403, 1463, 1637
BsnI GGCC 1 cut(s) 1273
Bso31I GGTCTC 1 cut(s) 718
Bsp1286I GDGCHC 1 cut(s) 1288
Bsp143I GATC 5 cut(s) 1150, 1345, 1549, 1696, 1738
Bsp19I CCATGG 2 cut(s) 319, 1578
BspACI CCGC 1 cut(s) 480
BspANI GGCC 1 cut(s) 1273
BspCNI CTCAG 2 cut(s) 842, 1633
BspFNI CGCG 1 cut(s) 1132
BspHI TCATGA 2 cut(s) 1147, 1693
BspLI GGNNCC 4 cut(s) 1204, 1287, 1551, 1576
BspMAI CTGCAG 1 cut(s) 1054
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 4 cut(s) 1544, 1557, 1691, 1733
BspQI GCTCTTC 2 cut(s) 230, 1709
BspT107I GGYRCC 1 cut(s) 1285
BspTNI GGTCTC 1 cut(s) 718
BsrDI GCAATG 2 cut(s) 1666, 1683
BsrI ACTGG 7 cut(s) 22, 410, 456, 1009, 1204, 1294, 1597
BssECI CCNNGG 5 cut(s) 319, 906, 1493, 1545, 1578
BssMI GATC 5 cut(s) 1150, 1345, 1549, 1696, 1738
BssSI CACGAG 1 cut(s) 1513
BssT1I CCWWGG 4 cut(s) 319, 1493, 1545, 1578
Bst2BI CACGAG 1 cut(s) 1513
Bst2UI CCWGG 2 cut(s) 907, 1251
Bst4CI ACNGT 7 cut(s) 67, 294, 541, 556, 662, 821, 1393
Bst6I CTCTTC 3 cut(s) 230, 1709, 1718
BstAPI GCANNNNNTGC 1 cut(s) 788
BstDEI CTNAG 5 cut(s) 271, 829, 1319, 1641, 1710
BstDSI CCRYGG 2 cut(s) 319, 1578
BstEII GGTNACC 1 cut(s) 17
BstF5I GGATG 4 cut(s) 1187, 1263, 1504, 1705
BstFNI CGCG 1 cut(s) 1132
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 5 cut(s) 1153, 1348, 1552, 1699, 1741
BstMAI GTCTC 3 cut(s) 718, 930, 1533
BstMBI GATC 5 cut(s) 1150, 1345, 1549, 1696, 1738
BstMWI GCNNNNNNNGC 5 cut(s) 307, 788, 1307, 1374, 1685
BstNI CCWGG 2 cut(s) 907, 1251
BstPI GGTNACC 1 cut(s) 17
BstSCI CCNGG 2 cut(s) 905, 1249
BstSFI CTRYAG 3 cut(s) 114, 522, 1050
BstSLI GKGCMC 1 cut(s) 1288
BstUI CGCG 1 cut(s) 1132
BstV1I GCAGC 8 cut(s) 273, 778, 791, 860, 1036, 1288, 1386, 1688
BstV2I GAAGAC 3 cut(s) 230, 714, 1127
BstX2I RGATCY 1 cut(s) 1549
BstXI CCANNNNNNTGG 1 cut(s) 1750
BstYI RGATCY 1 cut(s) 1549
BsuRI GGCC 1 cut(s) 1273
BtgI CCRYGG 2 cut(s) 319, 1578
BtgZI GCGATG 1 cut(s) 136
BtrI CACGTC 1 cut(s) 80
BtsCI GGATG 4 cut(s) 1187, 1263, 1504, 1705
BtsI GCAGTG 2 cut(s) 164, 634
BtsIMutI CAGTG 5 cut(s) 164, 634, 667, 1389, 1638
BveI ACCTGC 1 cut(s) 37
CciI TCATGA 2 cut(s) 1147, 1693
CfoI GCGC 1 cut(s) 467
Cfr13I GGNCC 2 cut(s) 323, 1589
CseI GACGC 1 cut(s) 1121
CsiI ACCWGGT 1 cut(s) 1249
Csp6I GTAC 4 cut(s) 747, 1330, 1469, 1787
CspCI CAANNNNNGTGG 2 cut(s) 456, 491
CviQI GTAC 4 cut(s) 747, 1330, 1469, 1787
DdeI CTNAG 5 cut(s) 271, 829, 1319, 1641, 1710
DpnI GATC 5 cut(s) 1152, 1347, 1551, 1698, 1740
DpnII GATC 5 cut(s) 1150, 1345, 1549, 1696, 1738
DraI TTTAAA 2 cut(s) 808, 1179
DraIII CACNNNGTG 1 cut(s) 1253
Eam1104I CTCTTC 3 cut(s) 230, 1709, 1718
EarI CTCTTC 3 cut(s) 230, 1709, 1718
Eco130I CCWWGG 4 cut(s) 319, 1493, 1545, 1578
Eco147I AGGCCT 1 cut(s) 1273
Eco31I GGTCTC 1 cut(s) 718
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 323, 1589
Eco57I CTGAAG 3 cut(s) 78, 726, 1222
Eco91I GGTNACC 1 cut(s) 17
EcoO65I GGTNACC 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 1385
EcoRII CCWGG 2 cut(s) 905, 1249
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 4 cut(s) 319, 1493, 1545, 1578
ErhI CCWWGG 4 cut(s) 319, 1493, 1545, 1578
FaqI GGGAC 3 cut(s) 403, 1463, 1637
Fnu4HI GCNGC 8 cut(s) 287, 780, 792, 849, 1050, 1302, 1375, 1677
FokI GGATG 4 cut(s) 1174, 1250, 1511, 1692
Fsp4HI GCNGC 8 cut(s) 287, 780, 792, 849, 1050, 1302, 1375, 1677
FspBI CTAG 6 cut(s) 14, 678, 933, 1406, 1647, 1793
GlaI GCGC 1 cut(s) 466
GluI GCNGC 8 cut(s) 287, 780, 792, 849, 1050, 1302, 1375, 1677
GsaI CCCAGC 2 cut(s) 697, 855
GsuI CTGGAG 1 cut(s) 1277
HaeIII GGCC 1 cut(s) 1273
HgaI GACGC 1 cut(s) 1121
HhaI GCGC 1 cut(s) 467
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HincII GTYRAC 1 cut(s) 1505
HindII GTYRAC 1 cut(s) 1505
HindIII AAGCTT 2 cut(s) 86, 1103
HinfI GANTC 8 cut(s) 161, 428, 491, 673, 929, 1172, 1443, 1541
HphI GGTGA 5 cut(s) 18, 308, 560, 602, 1019
Hpy166II GTNNAC 3 cut(s) 1471, 1505, 1638
Hpy188I TCNGA 5 cut(s) 73, 723, 1075, 1461, 1560
Hpy188III TCNNGA 6 cut(s) 432, 495, 831, 933, 1148, 1694
Hpy8I GTNNAC 3 cut(s) 1471, 1505, 1638
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 4 cut(s) 102, 180, 336, 376
HpyCH4III ACNGT 7 cut(s) 67, 294, 541, 556, 662, 821, 1393
HpyCH4IV ACGT 2 cut(s) 79, 232
HpyF10VI GCNNNNNNNGC 5 cut(s) 307, 788, 1307, 1374, 1685
HpyF3I CTNAG 5 cut(s) 271, 829, 1319, 1641, 1710
HpySE526I ACGT 2 cut(s) 79, 232
HspAI GCGC 1 cut(s) 465
Kzo9I GATC 5 cut(s) 1150, 1345, 1549, 1696, 1738
LguI GCTCTTC 2 cut(s) 230, 1709
LmnI GCTCC 2 cut(s) 1208, 1574
Lsp1109I GCAGC 8 cut(s) 273, 778, 791, 860, 1036, 1288, 1386, 1688
LweI GCATC 6 cut(s) 159, 319, 364, 1193, 1319, 1493
MabI ACCWGGT 1 cut(s) 1249
MaeI CTAG 6 cut(s) 14, 678, 933, 1406, 1647, 1793
MaeII ACGT 2 cut(s) 79, 232
MaeIII GTNAC 5 cut(s) 17, 24, 176, 458, 1007
MalI GATC 5 cut(s) 1152, 1347, 1551, 1698, 1740
MboI GATC 5 cut(s) 1150, 1345, 1549, 1696, 1738
MboII GAAGA 8 cut(s) 217, 230, 719, 1127, 1181, 1340, 1726, 1735
MflI RGATCY 1 cut(s) 1549
MhlI GDGCHC 1 cut(s) 1288
MluI ACGCGT 1 cut(s) 1130
MlyI GAGTC 2 cut(s) 667, 1535
MmeI TCCRAC 2 cut(s) 530, 1215
MseI TTAA 5 cut(s) 545, 807, 1178, 1652, 1801
MslI CAYNNNNRTG 3 cut(s) 318, 539, 1479
MspA1I CMGCKG 1 cut(s) 851
MspR9I CCNGG 2 cut(s) 907, 1251
MvaI CCWGG 2 cut(s) 907, 1251
MvnI CGCG 1 cut(s) 1132
MwoI GCNNNNNNNGC 5 cut(s) 307, 788, 1307, 1374, 1685
NcoI CCATGG 2 cut(s) 319, 1578
NdeII GATC 5 cut(s) 1150, 1345, 1549, 1696, 1738
NlaIV GGNNCC 4 cut(s) 1204, 1287, 1551, 1576
NmuCI GTSAC 2 cut(s) 24, 1007
PagI TCATGA 2 cut(s) 1147, 1693
PaqCI CACCTGC 1 cut(s) 37
PceI AGGCCT 1 cut(s) 1273
PciSI GCTCTTC 2 cut(s) 230, 1709
PfeI GAWTC 6 cut(s) 161, 428, 491, 929, 1172, 1443
PflFI GACNNNGTC 1 cut(s) 602
PkrI GCNGC 8 cut(s) 288, 781, 793, 850, 1051, 1303, 1376, 1678
PleI GAGTC 2 cut(s) 667, 1535
PpsI GAGTC 2 cut(s) 667, 1535
PsiI TTATAA 2 cut(s) 945, 960
Psp1406I AACGTT 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 905, 1249
PspEI GGTNACC 1 cut(s) 17
PspFI CCCAGC 2 cut(s) 693, 851
PspGI CCWGG 2 cut(s) 905, 1249
PspN4I GGNNCC 4 cut(s) 1204, 1287, 1551, 1576
PspPI GGNCC 2 cut(s) 323, 1589
PstI CTGCAG 1 cut(s) 1054
PsuI RGATCY 1 cut(s) 1549
PsyI GACNNNGTC 1 cut(s) 602
PvuII CAGCTG 1 cut(s) 851
RsaI GTAC 4 cut(s) 748, 1331, 1470, 1788
RsaNI GTAC 4 cut(s) 747, 1330, 1469, 1787
RseI CAYNNNNRTG 3 cut(s) 318, 539, 1479
SapI GCTCTTC 2 cut(s) 230, 1709
SaqAI TTAA 5 cut(s) 545, 807, 1178, 1652, 1801
SatI GCNGC 8 cut(s) 287, 780, 792, 849, 1050, 1302, 1375, 1677
Sau3AI GATC 5 cut(s) 1150, 1345, 1549, 1696, 1738
Sau96I GGNCC 2 cut(s) 323, 1589
SchI GAGTC 2 cut(s) 667, 1535
ScrFI CCNGG 2 cut(s) 907, 1251
SduI GDGCHC 1 cut(s) 1288
SexAI ACCWGGT 1 cut(s) 1249
SfaNI GCATC 6 cut(s) 159, 319, 364, 1193, 1319, 1493
SfcI CTRYAG 3 cut(s) 114, 522, 1050
SinI GGWCC 2 cut(s) 323, 1589
SmiMI CAYNNNNRTG 3 cut(s) 318, 539, 1479
SseBI AGGCCT 1 cut(s) 1273
SsiI CCGC 1 cut(s) 480
SspI AATATT 1 cut(s) 202
SspMI CTAG 6 cut(s) 14, 678, 933, 1406, 1647, 1793
StuI AGGCCT 1 cut(s) 1273
StyD4I CCNGG 2 cut(s) 905, 1249
StyI CCWWGG 4 cut(s) 319, 1493, 1545, 1578
TaaI ACNGT 7 cut(s) 67, 294, 541, 556, 662, 821, 1393
TaiI ACGT 2 cut(s) 82, 235
TaqI TCGA 3 cut(s) 421, 1089, 1231
TatI WGTACW 2 cut(s) 746, 1468
TfiI GAWTC 6 cut(s) 161, 428, 491, 929, 1172, 1443
Tru1I TTAA 5 cut(s) 545, 807, 1178, 1652, 1801
Tru9I TTAA 5 cut(s) 545, 807, 1178, 1652, 1801
TscAI CASTG 5 cut(s) 171, 634, 667, 1396, 1645
TseFI GTSAC 2 cut(s) 24, 1007
TseI GCWGC 8 cut(s) 286, 779, 791, 848, 1049, 1301, 1374, 1676
Tsp45I GTSAC 2 cut(s) 24, 1007
TspDTI ATGAA 8 cut(s) 521, 786, 981, 1077, 1136, 1182, 1436, 1682
TspRI CASTG 5 cut(s) 171, 634, 667, 1396, 1645
Tth111I GACNNNGTC 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 323, 1589
XapI RAATTY 4 cut(s) 416, 448, 1385, 1607
XbaI TCTAGA 1 cut(s) 932
XspI CTAG 6 cut(s) 14, 678, 933, 1406, 1647, 1793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.