exonuclease
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G18090 AT1G18090 |
| fragaria_vesca | FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 |
| malus_domestica | MD14G1234100.v1.1 |
| prunus_persica | Prupe.5G230300_v2.0.a1 |
| pyrus_communis | pycom14g19510 |
| rosa_chinensis | RchiOBHm_Chr7g0178771 |
| rosa_laevigata | RLG00000005417 |
| rosa_multiflora | Rmu_sc0015029.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00274630 |
| rosa_rugosa | Rorug06G0419200 |
| rosa_samantha | Rh7AG018700 Rh7AG018800 Rh7BG018100 Rh7CG018900 Rh7DG018700 |
| rosa_wichuraiana | Rw7G001510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1577 |
| AccII | CGCG | 1 cut(s) | 78 |
| AcsI | RAATTY | 7 cut(s) | 145, 326, 437, 655, 1101, 1431, 1717 |
| AcuI | CTGAAG | 2 cut(s) | 843, 1026 |
| AcyI | GRCGYC | 1 cut(s) | 90 |
| AfaI | GTAC | 3 cut(s) | 255, 640, 1189 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 99, 1330, 1503 |
| AjnI | CCWGG | 1 cut(s) | 1608 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 945, 977 |
| Alw21I | GWGCWC | 3 cut(s) | 363, 784, 1304 |
| Alw26I | GTCTC | 4 cut(s) | 945, 1102, 1109, 1456 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 418 |
| AoxI | GGCC | 2 cut(s) | 634, 1193 |
| ApeKI | GCWGC | 6 cut(s) | 266, 350, 515, 1130, 1250, 1677 |
| ApoI | RAATTY | 7 cut(s) | 145, 326, 437, 655, 1101, 1431, 1717 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1081, 1113 |
| AspLEI | GCGC | 2 cut(s) | 78, 285 |
| AspS9I | GGNCC | 5 cut(s) | 580, 634, 968, 1018, 1193 |
| AsuHPI | GGTGA | 4 cut(s) | 36, 203, 608, 1573 |
| AsuNHI | GCTAGC | 1 cut(s) | 472 |
| AvaII | GGWCC | 3 cut(s) | 580, 968, 1018 |
| BanII | GRGCYC | 1 cut(s) | 363 |
| BauI | CACGAG | 1 cut(s) | 1728 |
| Bbv12I | GWGCWC | 3 cut(s) | 363, 784, 1304 |
| BbvCI | CCTCAGC | 1 cut(s) | 1422 |
| BbvI | GCAGC | 6 cut(s) | 253, 337, 502, 1117, 1262, 1689 |
| BccI | CCATC | 9 cut(s) | 236, 397, 571, 598, 721, 941, 991, 1282, 1328 |
| BceAI | ACGGC | 1 cut(s) | 621 |
| BciT130I | CCWGG | 1 cut(s) | 1610 |
| BclI | TGATCA | 2 cut(s) | 661, 1042 |
| BcoDI | GTCTC | 4 cut(s) | 945, 1102, 1109, 1456 |
| BfaI | CTAG | 4 cut(s) | 473, 542, 944, 1059 |
| BfmI | CTRYAG | 6 cut(s) | 273, 516, 1131, 1197, 1248, 1578 |
| BfoI | RGCGCY | 1 cut(s) | 286 |
| BglII | AGATCT | 1 cut(s) | 13 |
| BisI | GCNGC | 6 cut(s) | 267, 351, 516, 1131, 1251, 1678 |
| BlsI | GCNGC | 6 cut(s) | 268, 352, 517, 1132, 1252, 1679 |
| Bme1390I | CCNGG | 1 cut(s) | 1610 |
| Bme18I | GGWCC | 3 cut(s) | 580, 968, 1018 |
| BmgT120I | GGNCC | 5 cut(s) | 580, 634, 968, 1018, 1193 |
| BmiI | GGNNCC | 2 cut(s) | 450, 1020 |
| BmrFI | CCNGG | 1 cut(s) | 1610 |
| BmrI | ACTGGG | 2 cut(s) | 221, 1452 |
| BmsI | GCATC | 2 cut(s) | 454, 874 |
| BmtI | GCTAGC | 1 cut(s) | 476 |
| BmuI | ACTGGG | 2 cut(s) | 221, 1452 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 370, 402 |
| BpmI | CTGGAG | 3 cut(s) | 632, 1316, 1584 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1422 |
| BsaBI | GATNNNNATC | 1 cut(s) | 537 |
| BsaHI | GRCGYC | 1 cut(s) | 90 |
| BsaI | GGTCTC | 1 cut(s) | 1102 |
| BsaJI | CCNNGG | 4 cut(s) | 750, 964, 1608, 1635 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 99, 1330, 1503 |
| Bse118I | RCCGGY | 1 cut(s) | 68 |
| Bse1I | ACTGG | 4 cut(s) | 227, 629, 1299, 1458 |
| Bse3DI | GCAATG | 2 cut(s) | 256, 324 |
| Bse8I | GATNNNNATC | 1 cut(s) | 537 |
| BseBI | CCWGG | 1 cut(s) | 1610 |
| BseDI | CCNNGG | 4 cut(s) | 750, 964, 1608, 1635 |
| BseGI | GGATG | 1 cut(s) | 1320 |
| BseJI | GATNNNNATC | 1 cut(s) | 537 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 99, 1330, 1503 |
| BseMI | GCAATG | 2 cut(s) | 256, 324 |
| BseMII | CTCAG | 6 cut(s) | 34, 348, 410, 1104, 1392, 1413 |
| BseNI | ACTGG | 4 cut(s) | 227, 629, 1299, 1458 |
| BseXI | GCAGC | 6 cut(s) | 253, 337, 502, 1117, 1262, 1689 |
| BseYI | CCCAGC | 1 cut(s) | 1051 |
| BsgI | GTGCAG | 1 cut(s) | 956 |
| Bsh1236I | CGCG | 1 cut(s) | 78 |
| BshFI | GGCC | 2 cut(s) | 636, 1195 |
| BsiHKAI | GWGCWC | 3 cut(s) | 363, 784, 1304 |
| BsiSI | CCGG | 1 cut(s) | 69 |
| BslFI | GGGAC | 1 cut(s) | 1591 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 99, 1330, 1503 |
| BsmAI | GTCTC | 4 cut(s) | 945, 1102, 1109, 1456 |
| BsmFI | GGGAC | 1 cut(s) | 1591 |
| BsmI | GAATGC | 1 cut(s) | 476 |
| BsnI | GGCC | 2 cut(s) | 636, 1195 |
| Bso31I | GGTCTC | 1 cut(s) | 1102 |
| Bsp1286I | GDGCHC | 3 cut(s) | 363, 784, 1304 |
| Bsp143I | GATC | 7 cut(s) | 13, 422, 538, 661, 775, 1042, 1381 |
| BspANI | GGCC | 2 cut(s) | 636, 1195 |
| BspCNI | CTCAG | 6 cut(s) | 33, 349, 411, 1105, 1391, 1414 |
| BspFNI | CGCG | 1 cut(s) | 78 |
| BspHI | TCATGA | 2 cut(s) | 27, 307 |
| BspLI | GGNNCC | 2 cut(s) | 450, 1020 |
| BspMAI | CTGCAG | 4 cut(s) | 277, 520, 1135, 1252 |
| BspOI | GCTAGC | 1 cut(s) | 476 |
| BspQI | GCTCTTC | 2 cut(s) | 273, 368 |
| BspTNI | GGTCTC | 1 cut(s) | 1102 |
| BsrDI | GCAATG | 2 cut(s) | 256, 324 |
| BsrFI | RCCGGY | 1 cut(s) | 68 |
| BsrI | ACTGG | 4 cut(s) | 227, 629, 1299, 1458 |
| BssAI | RCCGGY | 1 cut(s) | 68 |
| BssECI | CCNNGG | 4 cut(s) | 750, 964, 1608, 1635 |
| BssMI | GATC | 7 cut(s) | 13, 422, 538, 661, 775, 1042, 1381 |
| BssNI | GRCGYC | 1 cut(s) | 90 |
| BssSI | CACGAG | 1 cut(s) | 1728 |
| BssT1I | CCWWGG | 2 cut(s) | 750, 1635 |
| Bst2BI | CACGAG | 1 cut(s) | 1728 |
| Bst2UI | CCWGG | 1 cut(s) | 1610 |
| Bst4CI | ACNGT | 1 cut(s) | 596 |
| Bst6I | CTCTTC | 5 cut(s) | 273, 368, 594, 1542, 1664 |
| BstACI | GRCGYC | 1 cut(s) | 90 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1256 |
| BstC8I | GCNNGC | 5 cut(s) | 70, 74, 474, 697, 870 |
| BstF5I | GGATG | 1 cut(s) | 1320 |
| BstFNI | CGCG | 1 cut(s) | 78 |
| BstH2I | RGCGCY | 1 cut(s) | 286 |
| BstHHI | GCGC | 2 cut(s) | 78, 285 |
| BstKTI | GATC | 7 cut(s) | 16, 425, 541, 664, 778, 1045, 1384 |
| BstMAI | GTCTC | 4 cut(s) | 945, 1102, 1109, 1456 |
| BstMBI | GATC | 7 cut(s) | 13, 422, 538, 661, 775, 1042, 1381 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 272, 473, 1127, 1256, 1270 |
| BstNI | CCWGG | 1 cut(s) | 1610 |
| BstNSI | RCATGY | 2 cut(s) | 872, 1532 |
| BstSCI | CCNGG | 1 cut(s) | 1608 |
| BstSFI | CTRYAG | 6 cut(s) | 273, 516, 1131, 1197, 1248, 1578 |
| BstUI | CGCG | 1 cut(s) | 78 |
| BstV1I | GCAGC | 6 cut(s) | 253, 337, 502, 1117, 1262, 1689 |
| BstX2I | RGATCY | 1 cut(s) | 13 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1094 |
| BstYI | RGATCY | 1 cut(s) | 13 |
| BsuRI | GGCC | 2 cut(s) | 636, 1195 |
| BtsCI | GGATG | 1 cut(s) | 1320 |
| BtsI | GCAGTG | 2 cut(s) | 270, 381 |
| BtsIMutI | CAGTG | 6 cut(s) | 270, 354, 381, 636, 1292, 1563 |
| Cac8I | GCNNGC | 5 cut(s) | 70, 74, 474, 697, 870 |
| CaiI | CAGNNNCTG | 1 cut(s) | 418 |
| CciI | TCATGA | 2 cut(s) | 27, 307 |
| CfoI | GCGC | 2 cut(s) | 78, 285 |
| Cfr10I | RCCGGY | 1 cut(s) | 68 |
| Cfr13I | GGNCC | 5 cut(s) | 580, 634, 968, 1018, 1193 |
| CseI | GACGC | 1 cut(s) | 98 |
| Csp6I | GTAC | 3 cut(s) | 254, 639, 1188 |
| CviAII | CATG | 8 cut(s) | 28, 99, 123, 258, 308, 722, 869, 1529 |
| CviQI | GTAC | 3 cut(s) | 254, 639, 1188 |
| DpnI | GATC | 7 cut(s) | 15, 424, 540, 663, 777, 1044, 1383 |
| DpnII | GATC | 7 cut(s) | 13, 422, 538, 661, 775, 1042, 1381 |
| Eam1104I | CTCTTC | 5 cut(s) | 273, 368, 594, 1542, 1664 |
| EarI | CTCTTC | 5 cut(s) | 273, 368, 594, 1542, 1664 |
| Ecl136II | GAGCTC | 1 cut(s) | 361 |
| Eco130I | CCWWGG | 2 cut(s) | 750, 1635 |
| Eco24I | GRGCYC | 1 cut(s) | 363 |
| Eco31I | GGTCTC | 1 cut(s) | 1102 |
| Eco47I | GGWCC | 3 cut(s) | 580, 968, 1018 |
| Eco53kI | GAGCTC | 1 cut(s) | 361 |
| Eco57I | CTGAAG | 2 cut(s) | 843, 1026 |
| EcoICRI | GAGCTC | 1 cut(s) | 361 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1193 |
| EcoRI | GAATTC | 1 cut(s) | 145 |
| EcoRII | CCWGG | 1 cut(s) | 1608 |
| EcoT14I | CCWWGG | 2 cut(s) | 750, 1635 |
| EcoT38I | GRGCYC | 1 cut(s) | 363 |
| ErhI | CCWWGG | 2 cut(s) | 750, 1635 |
| FaeI | CATG | 8 cut(s) | 31, 102, 126, 261, 311, 725, 872, 1532 |
| FaqI | GGGAC | 1 cut(s) | 1591 |
| FatI | CATG | 8 cut(s) | 27, 98, 122, 257, 307, 721, 868, 1528 |
| FauNDI | CATATG | 3 cut(s) | 454, 550, 909 |
| FbaI | TGATCA | 2 cut(s) | 661, 1042 |
| FblI | GTMKAC | 1 cut(s) | 1577 |
| Fnu4HI | GCNGC | 6 cut(s) | 267, 351, 516, 1131, 1251, 1678 |
| FokI | GGATG | 1 cut(s) | 1307 |
| FriOI | GRGCYC | 1 cut(s) | 363 |
| Fsp4HI | GCNGC | 6 cut(s) | 267, 351, 516, 1131, 1251, 1678 |
| FspBI | CTAG | 4 cut(s) | 473, 542, 944, 1059 |
| GlaI | GCGC | 2 cut(s) | 77, 284 |
| GluI | GCNGC | 6 cut(s) | 267, 351, 516, 1131, 1251, 1678 |
| GsaI | CCCAGC | 1 cut(s) | 1055 |
| GsuI | CTGGAG | 3 cut(s) | 632, 1316, 1584 |
| HaeII | RGCGCY | 1 cut(s) | 286 |
| HaeIII | GGCC | 2 cut(s) | 636, 1195 |
| HapII | CCGG | 1 cut(s) | 69 |
| HgaI | GACGC | 1 cut(s) | 98 |
| HhaI | GCGC | 2 cut(s) | 78, 285 |
| Hin1I | GRCGYC | 1 cut(s) | 90 |
| Hin1II | CATG | 8 cut(s) | 31, 102, 126, 261, 311, 725, 872, 1532 |
| Hin6I | GCGC | 2 cut(s) | 76, 283 |
| HinP1I | GCGC | 2 cut(s) | 76, 283 |
| HincII | GTYRAC | 1 cut(s) | 1483 |
| HindII | GTYRAC | 1 cut(s) | 1483 |
| HindIII | AAGCTT | 3 cut(s) | 741, 1153, 1628 |
| HinfI | GANTC | 6 cut(s) | 24, 415, 1210, 1244, 1574, 1604 |
| HpaI | GTTAAC | 1 cut(s) | 1483 |
| HpaII | CCGG | 1 cut(s) | 69 |
| HphI | GGTGA | 4 cut(s) | 36, 203, 608, 1573 |
| Hpy166II | GTNNAC | 5 cut(s) | 641, 1375, 1483, 1578, 1621 |
| Hpy188I | TCNGA | 7 cut(s) | 23, 420, 427, 968, 1107, 1381, 1438 |
| Hpy8I | GTNNAC | 5 cut(s) | 641, 1375, 1483, 1578, 1621 |
| Hpy99I | CGWCG | 1 cut(s) | 92 |
| HpyCH4III | ACNGT | 1 cut(s) | 596 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 272, 473, 1127, 1256, 1270 |
| Hsp92I | GRCGYC | 1 cut(s) | 90 |
| Hsp92II | CATG | 8 cut(s) | 31, 102, 126, 261, 311, 725, 872, 1532 |
| HspAI | GCGC | 2 cut(s) | 76, 283 |
| KroI | GCCGGC | 1 cut(s) | 68 |
| KroNI | GCCGGC | 1 cut(s) | 70 |
| Ksp22I | TGATCA | 2 cut(s) | 661, 1042 |
| KspAI | GTTAAC | 1 cut(s) | 1483 |
| Kzo9I | GATC | 7 cut(s) | 13, 422, 538, 661, 775, 1042, 1381 |
| LguI | GCTCTTC | 2 cut(s) | 273, 368 |
| LmnI | GCTCC | 4 cut(s) | 113, 133, 454, 1392 |
| Lsp1109I | GCAGC | 6 cut(s) | 253, 337, 502, 1117, 1262, 1689 |
| LweI | GCATC | 2 cut(s) | 454, 874 |
| MaeI | CTAG | 4 cut(s) | 473, 542, 944, 1059 |
| MaeIII | GTNAC | 8 cut(s) | 209, 382, 590, 767, 1288, 1460, 1561, 1594 |
| MalI | GATC | 7 cut(s) | 15, 424, 540, 663, 777, 1044, 1383 |
| MboI | GATC | 7 cut(s) | 13, 422, 538, 661, 775, 1042, 1381 |
| MboII | GAAGA | 9 cut(s) | 8, 290, 306, 355, 611, 836, 1148, 1559, 1681 |
| MfeI | CAATTG | 1 cut(s) | 999 |
| MflI | RGATCY | 1 cut(s) | 13 |
| MhlI | GDGCHC | 3 cut(s) | 363, 784, 1304 |
| MlyI | GAGTC | 2 cut(s) | 1583, 1613 |
| MnlI | CCTC | 9 cut(s) | 363, 451, 523, 974, 990, 1066, 1171, 1417, 1543 |
| MroNI | GCCGGC | 1 cut(s) | 68 |
| MseI | TTAA | 5 cut(s) | 330, 573, 624, 1080, 1482 |
| MslI | CAYNNNNRTG | 3 cut(s) | 121, 680, 1028 |
| MspI | CCGG | 1 cut(s) | 69 |
| MspR9I | CCNGG | 1 cut(s) | 1610 |
| MunI | CAATTG | 1 cut(s) | 999 |
| Mva1269I | GAATGC | 1 cut(s) | 476 |
| MvaI | CCWGG | 1 cut(s) | 1610 |
| MvnI | CGCG | 1 cut(s) | 78 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 272, 473, 1127, 1256, 1270 |
| NaeI | GCCGGC | 1 cut(s) | 70 |
| NdeI | CATATG | 3 cut(s) | 454, 550, 909 |
| NdeII | GATC | 7 cut(s) | 13, 422, 538, 661, 775, 1042, 1381 |
| NgoMIV | GCCGGC | 1 cut(s) | 68 |
| NheI | GCTAGC | 1 cut(s) | 472 |
| NlaIII | CATG | 8 cut(s) | 31, 102, 126, 261, 311, 725, 872, 1532 |
| NlaIV | GGNNCC | 2 cut(s) | 450, 1020 |
| NmuCI | GTSAC | 2 cut(s) | 209, 1561 |
| NspI | RCATGY | 2 cut(s) | 872, 1532 |
| PaeI | GCATGC | 1 cut(s) | 872 |
| PagI | TCATGA | 2 cut(s) | 27, 307 |
| PciSI | GCTCTTC | 2 cut(s) | 273, 368 |
| PctI | GAATGC | 1 cut(s) | 476 |
| PdiI | GCCGGC | 1 cut(s) | 70 |
| PfeI | GAWTC | 4 cut(s) | 24, 415, 1210, 1244 |
| PkrI | GCNGC | 6 cut(s) | 268, 352, 517, 1132, 1252, 1679 |
| PleI | GAGTC | 2 cut(s) | 1582, 1612 |
| PpsI | GAGTC | 2 cut(s) | 1582, 1612 |
| Psp124BI | GAGCTC | 1 cut(s) | 363 |
| Psp6I | CCWGG | 1 cut(s) | 1608 |
| PspFI | CCCAGC | 1 cut(s) | 1051 |
| PspGI | CCWGG | 1 cut(s) | 1608 |
| PspN4I | GGNNCC | 2 cut(s) | 450, 1020 |
| PspPI | GGNCC | 5 cut(s) | 580, 634, 968, 1018, 1193 |
| PstI | CTGCAG | 4 cut(s) | 277, 520, 1135, 1252 |
| PstNI | CAGNNNCTG | 1 cut(s) | 418 |
| PsuI | RGATCY | 1 cut(s) | 13 |
| RsaI | GTAC | 3 cut(s) | 255, 640, 1189 |
| RsaNI | GTAC | 3 cut(s) | 254, 639, 1188 |
| RseI | CAYNNNNRTG | 3 cut(s) | 121, 680, 1028 |
| SacI | GAGCTC | 1 cut(s) | 363 |
| SapI | GCTCTTC | 2 cut(s) | 273, 368 |
| SaqAI | TTAA | 5 cut(s) | 330, 573, 624, 1080, 1482 |
| SatI | GCNGC | 6 cut(s) | 267, 351, 516, 1131, 1251, 1678 |
| Sau3AI | GATC | 7 cut(s) | 13, 422, 538, 661, 775, 1042, 1381 |
| Sau96I | GGNCC | 5 cut(s) | 580, 634, 968, 1018, 1193 |
| SchI | GAGTC | 2 cut(s) | 1583, 1613 |
| ScrFI | CCNGG | 1 cut(s) | 1610 |
| SduI | GDGCHC | 3 cut(s) | 363, 784, 1304 |
| SfaNI | GCATC | 2 cut(s) | 454, 874 |
| SfcI | CTRYAG | 6 cut(s) | 273, 516, 1131, 1197, 1248, 1578 |
| SinI | GGWCC | 3 cut(s) | 580, 968, 1018 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 121, 680, 1028 |
| SphI | GCATGC | 1 cut(s) | 872 |
| SspI | AATATT | 3 cut(s) | 433, 879, 1093 |
| SspMI | CTAG | 4 cut(s) | 473, 542, 944, 1059 |
| SstI | GAGCTC | 1 cut(s) | 363 |
| StyD4I | CCNGG | 1 cut(s) | 1608 |
| StyI | CCWWGG | 2 cut(s) | 750, 1635 |
| TaaI | ACNGT | 1 cut(s) | 596 |
| TaqI | TCGA | 3 cut(s) | 87, 492, 1277 |
| TatI | WGTACW | 1 cut(s) | 1187 |
| TfiI | GAWTC | 4 cut(s) | 24, 415, 1210, 1244 |
| Tru1I | TTAA | 5 cut(s) | 330, 573, 624, 1080, 1482 |
| Tru9I | TTAA | 5 cut(s) | 330, 573, 624, 1080, 1482 |
| TscAI | CASTG | 6 cut(s) | 277, 361, 381, 636, 1299, 1563 |
| TseFI | GTSAC | 2 cut(s) | 209, 1561 |
| TseI | GCWGC | 6 cut(s) | 266, 350, 515, 1130, 1250, 1677 |
| Tsp45I | GTSAC | 2 cut(s) | 209, 1561 |
| TspGWI | ACGGA | 1 cut(s) | 1375 |
| TspRI | CASTG | 6 cut(s) | 277, 361, 381, 636, 1299, 1563 |
| VpaK11BI | GGWCC | 3 cut(s) | 580, 968, 1018 |
| XapI | RAATTY | 7 cut(s) | 145, 326, 437, 655, 1101, 1431, 1717 |
| XbaI | TCTAGA | 2 cut(s) | 943, 1058 |
| XceI | RCATGY | 2 cut(s) | 872, 1532 |
| XmiI | GTMKAC | 1 cut(s) | 1577 |
| XspI | CTAG | 4 cut(s) | 473, 542, 944, 1059 |