Prupe.5G230300_v2.0.a1

exonuclease

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
17593946 .. 17597964
4019 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G230300.1

Sequence Viewer

Length: 1737 bp
ATGGGTATCAAAGATCTTCTCAGATTCATGAAACCTTATATTTCACCCATTCATATCAAGAAATATGCCGGCAAGCGCGTGGGTATCGACGCCTATTCATGGCTTCACAAAGGAGCATATTCATGTAGTTTGGAGCTTTGTATGAATTCAAATAGCGAAAGGAAATTGAAATACATAGATTATTTTATGCACCGAATAAATCTGCTTCGTCACCATAAGATAACCCCAGTAGTCGTCTTTGATGGTGGCAATGTACCATGTAAGGCTGCCACTGCAGAAGAGCGCCACAGGAGAAGAAAGACTAATCATGATTTGGCAATGGCAAAATTTAAGGAAGGGGATATTAGAGCTGCCACTGAGCTCTTCCAGAGGGCAGTGAGTGTAACTCCATCTATGGCACATCAACTAATACAGATTCTGAGATCAGAGAATATTGAATTTGTAGTGGCTCCATATGAGGCTGATGCACAGCTAGCATTCCTGTCCAATCTCGAAGCAGAGAAGGGTGGAATTGCTGCAGTTATTACAGAGGATAGTGATCTAGTGGCATATGGTTGCCAAGCTGTTGTCTTTAAGATGGACCAATATGGTAACGGTGAAGAGATGGTGCTGGAGAATGTTTTTAATCCAGTGGGCCGTACACCTTCCTTCCAAAATTTTGATCAGGAATTATTCACGGGTATGTGTGTCTTGGCAGGCTGTGATTTCCTTCCATCTGTTCATGGTATTGGGATTGCAAAAGCTTATGCCTTGGTTTCTAAGTATCGTAACTTAGATCGTGCTCTATCAGTTTTGAAATCGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAAATGTTTCAAAGAAGCAGTTGCAGTTTTTCAGCATGCTCAAATATTTGATGCCGAAAAGAAAAAGGTCAAACATATGAAAGCCATTCCAGAAAACCTTGTGCAGTCTCTAGATGGAGAACTTGATTTCCTCGGACCAGAAATGCCTCCATCAGTAGCTACTGCAATTGCTGAAGGAAACTTGGACCCCATAAATATGAAGGCATTTGATCATTTCCCAGCCTCTAGACATCATCAAGAACCTATTAAGAGCCAAAATATTGGTCAAATTCAGAGACCTGAGACTGCTGTGGTAGCTGCAGAAGATAGCTGTTTTGTAAGCTTTCCCTCCCATAAAAGCCGAAGGAAAGATAGTACAGGGCCTACAGAAAGGCAGAATCCTGTTTCAAATGAAAATAAGTATTTGAATGAATCTGCAGCACTTGCAAAGCTAATTGTGCCATCGACAAATAATGTAACACTGGAGAGCACAATAGCACCCAACACCATCCCGTTGAAGGTTCGCCACAACAATCCATTCAAGAAACGGAAAGATGATGTTCACTCAGATCAAATGGGGAGCAAAACTAAACAAGTTTCAAGTGAAGCTGAGGTGGAAATTTCGGACACCTTGAATGTCTCTCCCAGTAACATCAAAACTAAAGTTGTTAACAATGTTCCTTCCAGAAAAAGGAAAAATGATATTATCTTAGAGCATGTAGAAAGCATTGGGGAAGAGGTTTCAGTGGTGACAGAGATAGAGTCTACAGACATATTGTGTGTAACTCCAGAGTCCCAGGAAAGTGTAAACTCTAAGCTTCCCAAGGGAAAAAGGATAGTGAAAAATGAGAAGTTGAAGAGAAGCAGCTTCAAGAGTTCAGGGAATAAAAATAGCAGTATCTTGAATTTCTTTTCTCGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

579

Amino Acids

64.5

Weight (kDa)

8.79

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010147)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1577
AccII CGCG 1 cut(s) 78
AcsI RAATTY 7 cut(s) 145, 326, 437, 655, 1101, 1431, 1717
AcuI CTGAAG 2 cut(s) 843, 1026
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 3 cut(s) 255, 640, 1189
AfiI CCNNNNNNNGG 3 cut(s) 99, 1330, 1503
AjnI CCWGG 1 cut(s) 1608
AloI GAACNNNNNNTCC 2 cut(s) 945, 977
Alw21I GWGCWC 3 cut(s) 363, 784, 1304
Alw26I GTCTC 4 cut(s) 945, 1102, 1109, 1456
AlwNI CAGNNNCTG 1 cut(s) 418
AoxI GGCC 2 cut(s) 634, 1193
ApeKI GCWGC 6 cut(s) 266, 350, 515, 1130, 1250, 1677
ApoI RAATTY 7 cut(s) 145, 326, 437, 655, 1101, 1431, 1717
ArsI GACNNNNNNTTYG 2 cut(s) 1081, 1113
AspLEI GCGC 2 cut(s) 78, 285
AspS9I GGNCC 5 cut(s) 580, 634, 968, 1018, 1193
AsuHPI GGTGA 4 cut(s) 36, 203, 608, 1573
AsuNHI GCTAGC 1 cut(s) 472
AvaII GGWCC 3 cut(s) 580, 968, 1018
BanII GRGCYC 1 cut(s) 363
BauI CACGAG 1 cut(s) 1728
Bbv12I GWGCWC 3 cut(s) 363, 784, 1304
BbvCI CCTCAGC 1 cut(s) 1422
BbvI GCAGC 6 cut(s) 253, 337, 502, 1117, 1262, 1689
BccI CCATC 9 cut(s) 236, 397, 571, 598, 721, 941, 991, 1282, 1328
BceAI ACGGC 1 cut(s) 621
BciT130I CCWGG 1 cut(s) 1610
BclI TGATCA 2 cut(s) 661, 1042
BcoDI GTCTC 4 cut(s) 945, 1102, 1109, 1456
BfaI CTAG 4 cut(s) 473, 542, 944, 1059
BfmI CTRYAG 6 cut(s) 273, 516, 1131, 1197, 1248, 1578
BfoI RGCGCY 1 cut(s) 286
BglII AGATCT 1 cut(s) 13
BisI GCNGC 6 cut(s) 267, 351, 516, 1131, 1251, 1678
BlsI GCNGC 6 cut(s) 268, 352, 517, 1132, 1252, 1679
Bme1390I CCNGG 1 cut(s) 1610
Bme18I GGWCC 3 cut(s) 580, 968, 1018
BmgT120I GGNCC 5 cut(s) 580, 634, 968, 1018, 1193
BmiI GGNNCC 2 cut(s) 450, 1020
BmrFI CCNGG 1 cut(s) 1610
BmrI ACTGGG 2 cut(s) 221, 1452
BmsI GCATC 2 cut(s) 454, 874
BmtI GCTAGC 1 cut(s) 476
BmuI ACTGGG 2 cut(s) 221, 1452
BplI GAGNNNNNCTC 2 cut(s) 370, 402
BpmI CTGGAG 3 cut(s) 632, 1316, 1584
Bpu10I CCTNAGC 1 cut(s) 1422
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 1102
BsaJI CCNNGG 4 cut(s) 750, 964, 1608, 1635
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 1330, 1503
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 4 cut(s) 227, 629, 1299, 1458
Bse3DI GCAATG 2 cut(s) 256, 324
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 1610
BseDI CCNNGG 4 cut(s) 750, 964, 1608, 1635
BseGI GGATG 1 cut(s) 1320
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 99, 1330, 1503
BseMI GCAATG 2 cut(s) 256, 324
BseMII CTCAG 6 cut(s) 34, 348, 410, 1104, 1392, 1413
BseNI ACTGG 4 cut(s) 227, 629, 1299, 1458
BseXI GCAGC 6 cut(s) 253, 337, 502, 1117, 1262, 1689
BseYI CCCAGC 1 cut(s) 1051
BsgI GTGCAG 1 cut(s) 956
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 636, 1195
BsiHKAI GWGCWC 3 cut(s) 363, 784, 1304
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 1591
BslI CCNNNNNNNGG 3 cut(s) 99, 1330, 1503
BsmAI GTCTC 4 cut(s) 945, 1102, 1109, 1456
BsmFI GGGAC 1 cut(s) 1591
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 2 cut(s) 636, 1195
Bso31I GGTCTC 1 cut(s) 1102
Bsp1286I GDGCHC 3 cut(s) 363, 784, 1304
Bsp143I GATC 7 cut(s) 13, 422, 538, 661, 775, 1042, 1381
BspANI GGCC 2 cut(s) 636, 1195
BspCNI CTCAG 6 cut(s) 33, 349, 411, 1105, 1391, 1414
BspFNI CGCG 1 cut(s) 78
BspHI TCATGA 2 cut(s) 27, 307
BspLI GGNNCC 2 cut(s) 450, 1020
BspMAI CTGCAG 4 cut(s) 277, 520, 1135, 1252
BspOI GCTAGC 1 cut(s) 476
BspQI GCTCTTC 2 cut(s) 273, 368
BspTNI GGTCTC 1 cut(s) 1102
BsrDI GCAATG 2 cut(s) 256, 324
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 4 cut(s) 227, 629, 1299, 1458
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 4 cut(s) 750, 964, 1608, 1635
BssMI GATC 7 cut(s) 13, 422, 538, 661, 775, 1042, 1381
BssNI GRCGYC 1 cut(s) 90
BssSI CACGAG 1 cut(s) 1728
BssT1I CCWWGG 2 cut(s) 750, 1635
Bst2BI CACGAG 1 cut(s) 1728
Bst2UI CCWGG 1 cut(s) 1610
Bst4CI ACNGT 1 cut(s) 596
Bst6I CTCTTC 5 cut(s) 273, 368, 594, 1542, 1664
BstACI GRCGYC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 1256
BstC8I GCNNGC 5 cut(s) 70, 74, 474, 697, 870
BstF5I GGATG 1 cut(s) 1320
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 2 cut(s) 78, 285
BstKTI GATC 7 cut(s) 16, 425, 541, 664, 778, 1045, 1384
BstMAI GTCTC 4 cut(s) 945, 1102, 1109, 1456
BstMBI GATC 7 cut(s) 13, 422, 538, 661, 775, 1042, 1381
BstMWI GCNNNNNNNGC 5 cut(s) 272, 473, 1127, 1256, 1270
BstNI CCWGG 1 cut(s) 1610
BstNSI RCATGY 2 cut(s) 872, 1532
BstSCI CCNGG 1 cut(s) 1608
BstSFI CTRYAG 6 cut(s) 273, 516, 1131, 1197, 1248, 1578
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 6 cut(s) 253, 337, 502, 1117, 1262, 1689
BstX2I RGATCY 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 1094
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 2 cut(s) 636, 1195
BtsCI GGATG 1 cut(s) 1320
BtsI GCAGTG 2 cut(s) 270, 381
BtsIMutI CAGTG 6 cut(s) 270, 354, 381, 636, 1292, 1563
Cac8I GCNNGC 5 cut(s) 70, 74, 474, 697, 870
CaiI CAGNNNCTG 1 cut(s) 418
CciI TCATGA 2 cut(s) 27, 307
CfoI GCGC 2 cut(s) 78, 285
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 5 cut(s) 580, 634, 968, 1018, 1193
CseI GACGC 1 cut(s) 98
Csp6I GTAC 3 cut(s) 254, 639, 1188
CviAII CATG 8 cut(s) 28, 99, 123, 258, 308, 722, 869, 1529
CviQI GTAC 3 cut(s) 254, 639, 1188
DpnI GATC 7 cut(s) 15, 424, 540, 663, 777, 1044, 1383
DpnII GATC 7 cut(s) 13, 422, 538, 661, 775, 1042, 1381
Eam1104I CTCTTC 5 cut(s) 273, 368, 594, 1542, 1664
EarI CTCTTC 5 cut(s) 273, 368, 594, 1542, 1664
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 750, 1635
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 1102
Eco47I GGWCC 3 cut(s) 580, 968, 1018
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 843, 1026
EcoICRI GAGCTC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 1193
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 1608
EcoT14I CCWWGG 2 cut(s) 750, 1635
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 2 cut(s) 750, 1635
FaeI CATG 8 cut(s) 31, 102, 126, 261, 311, 725, 872, 1532
FaqI GGGAC 1 cut(s) 1591
FatI CATG 8 cut(s) 27, 98, 122, 257, 307, 721, 868, 1528
FauNDI CATATG 3 cut(s) 454, 550, 909
FbaI TGATCA 2 cut(s) 661, 1042
FblI GTMKAC 1 cut(s) 1577
Fnu4HI GCNGC 6 cut(s) 267, 351, 516, 1131, 1251, 1678
FokI GGATG 1 cut(s) 1307
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 6 cut(s) 267, 351, 516, 1131, 1251, 1678
FspBI CTAG 4 cut(s) 473, 542, 944, 1059
GlaI GCGC 2 cut(s) 77, 284
GluI GCNGC 6 cut(s) 267, 351, 516, 1131, 1251, 1678
GsaI CCCAGC 1 cut(s) 1055
GsuI CTGGAG 3 cut(s) 632, 1316, 1584
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 2 cut(s) 636, 1195
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 98
HhaI GCGC 2 cut(s) 78, 285
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 8 cut(s) 31, 102, 126, 261, 311, 725, 872, 1532
Hin6I GCGC 2 cut(s) 76, 283
HinP1I GCGC 2 cut(s) 76, 283
HincII GTYRAC 1 cut(s) 1483
HindII GTYRAC 1 cut(s) 1483
HindIII AAGCTT 3 cut(s) 741, 1153, 1628
HinfI GANTC 6 cut(s) 24, 415, 1210, 1244, 1574, 1604
HpaI GTTAAC 1 cut(s) 1483
HpaII CCGG 1 cut(s) 69
HphI GGTGA 4 cut(s) 36, 203, 608, 1573
Hpy166II GTNNAC 5 cut(s) 641, 1375, 1483, 1578, 1621
Hpy188I TCNGA 7 cut(s) 23, 420, 427, 968, 1107, 1381, 1438
Hpy8I GTNNAC 5 cut(s) 641, 1375, 1483, 1578, 1621
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 596
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 473, 1127, 1256, 1270
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 8 cut(s) 31, 102, 126, 261, 311, 725, 872, 1532
HspAI GCGC 2 cut(s) 76, 283
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Ksp22I TGATCA 2 cut(s) 661, 1042
KspAI GTTAAC 1 cut(s) 1483
Kzo9I GATC 7 cut(s) 13, 422, 538, 661, 775, 1042, 1381
LguI GCTCTTC 2 cut(s) 273, 368
LmnI GCTCC 4 cut(s) 113, 133, 454, 1392
Lsp1109I GCAGC 6 cut(s) 253, 337, 502, 1117, 1262, 1689
LweI GCATC 2 cut(s) 454, 874
MaeI CTAG 4 cut(s) 473, 542, 944, 1059
MaeIII GTNAC 8 cut(s) 209, 382, 590, 767, 1288, 1460, 1561, 1594
MalI GATC 7 cut(s) 15, 424, 540, 663, 777, 1044, 1383
MboI GATC 7 cut(s) 13, 422, 538, 661, 775, 1042, 1381
MboII GAAGA 9 cut(s) 8, 290, 306, 355, 611, 836, 1148, 1559, 1681
MfeI CAATTG 1 cut(s) 999
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 3 cut(s) 363, 784, 1304
MlyI GAGTC 2 cut(s) 1583, 1613
MnlI CCTC 9 cut(s) 363, 451, 523, 974, 990, 1066, 1171, 1417, 1543
MroNI GCCGGC 1 cut(s) 68
MseI TTAA 5 cut(s) 330, 573, 624, 1080, 1482
MslI CAYNNNNRTG 3 cut(s) 121, 680, 1028
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 1610
MunI CAATTG 1 cut(s) 999
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 1 cut(s) 1610
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 5 cut(s) 272, 473, 1127, 1256, 1270
NaeI GCCGGC 1 cut(s) 70
NdeI CATATG 3 cut(s) 454, 550, 909
NdeII GATC 7 cut(s) 13, 422, 538, 661, 775, 1042, 1381
NgoMIV GCCGGC 1 cut(s) 68
NheI GCTAGC 1 cut(s) 472
NlaIII CATG 8 cut(s) 31, 102, 126, 261, 311, 725, 872, 1532
NlaIV GGNNCC 2 cut(s) 450, 1020
NmuCI GTSAC 2 cut(s) 209, 1561
NspI RCATGY 2 cut(s) 872, 1532
PaeI GCATGC 1 cut(s) 872
PagI TCATGA 2 cut(s) 27, 307
PciSI GCTCTTC 2 cut(s) 273, 368
PctI GAATGC 1 cut(s) 476
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 4 cut(s) 24, 415, 1210, 1244
PkrI GCNGC 6 cut(s) 268, 352, 517, 1132, 1252, 1679
PleI GAGTC 2 cut(s) 1582, 1612
PpsI GAGTC 2 cut(s) 1582, 1612
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 1608
PspFI CCCAGC 1 cut(s) 1051
PspGI CCWGG 1 cut(s) 1608
PspN4I GGNNCC 2 cut(s) 450, 1020
PspPI GGNCC 5 cut(s) 580, 634, 968, 1018, 1193
PstI CTGCAG 4 cut(s) 277, 520, 1135, 1252
PstNI CAGNNNCTG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 3 cut(s) 255, 640, 1189
RsaNI GTAC 3 cut(s) 254, 639, 1188
RseI CAYNNNNRTG 3 cut(s) 121, 680, 1028
SacI GAGCTC 1 cut(s) 363
SapI GCTCTTC 2 cut(s) 273, 368
SaqAI TTAA 5 cut(s) 330, 573, 624, 1080, 1482
SatI GCNGC 6 cut(s) 267, 351, 516, 1131, 1251, 1678
Sau3AI GATC 7 cut(s) 13, 422, 538, 661, 775, 1042, 1381
Sau96I GGNCC 5 cut(s) 580, 634, 968, 1018, 1193
SchI GAGTC 2 cut(s) 1583, 1613
ScrFI CCNGG 1 cut(s) 1610
SduI GDGCHC 3 cut(s) 363, 784, 1304
SfaNI GCATC 2 cut(s) 454, 874
SfcI CTRYAG 6 cut(s) 273, 516, 1131, 1197, 1248, 1578
SinI GGWCC 3 cut(s) 580, 968, 1018
SmiMI CAYNNNNRTG 3 cut(s) 121, 680, 1028
SphI GCATGC 1 cut(s) 872
SspI AATATT 3 cut(s) 433, 879, 1093
SspMI CTAG 4 cut(s) 473, 542, 944, 1059
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 1608
StyI CCWWGG 2 cut(s) 750, 1635
TaaI ACNGT 1 cut(s) 596
TaqI TCGA 3 cut(s) 87, 492, 1277
TatI WGTACW 1 cut(s) 1187
TfiI GAWTC 4 cut(s) 24, 415, 1210, 1244
Tru1I TTAA 5 cut(s) 330, 573, 624, 1080, 1482
Tru9I TTAA 5 cut(s) 330, 573, 624, 1080, 1482
TscAI CASTG 6 cut(s) 277, 361, 381, 636, 1299, 1563
TseFI GTSAC 2 cut(s) 209, 1561
TseI GCWGC 6 cut(s) 266, 350, 515, 1130, 1250, 1677
Tsp45I GTSAC 2 cut(s) 209, 1561
TspGWI ACGGA 1 cut(s) 1375
TspRI CASTG 6 cut(s) 277, 361, 381, 636, 1299, 1563
VpaK11BI GGWCC 3 cut(s) 580, 968, 1018
XapI RAATTY 7 cut(s) 145, 326, 437, 655, 1101, 1431, 1717
XbaI TCTAGA 2 cut(s) 943, 1058
XceI RCATGY 2 cut(s) 872, 1532
XmiI GTMKAC 1 cut(s) 1577
XspI CTAG 4 cut(s) 473, 542, 944, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.