Rmu_sc0015029.1_g000001

exonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015029.1
OG0010147
Physical Location & Seq
Reverse (-)
1 .. 3244
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015029.1_g000001.1.cds

Sequence Viewer

Length: 975 bp
atgtgtgtcttggctggctgtgatttccttccatctgttcctggaattgggattggtaaagcttatgccttggtttctaagtatcaaaacttagatcgtgctttatcagttttgaaattgcagaagggcaatcaaatgcctgaagattaccccagatctttcagagaagcagctgcagttttccagcatgctcaagtatacgactctgacaagaaaattgtcaagcatatgagacccataccacaagagcttgtggagtcccttgatggggaacttgatttccttggactagaaatcccatcatcaatagccattgcaattgctgaaggaaaattggaccccataagtatggaggcctttgatcatttccccagttccagttctagacatcggtcagatcccattaagagccaaattactcatcactttcagagatctgagactgctactgtatctgcacaagtcagtagctttgtggccttttcccataaaaccggaaaacaagatattactacgcctacagaaaagcagaatccagttttagatgaaaagaagtatttgaatgaagctgcggcacttggaaaactaattgttccttcgacaaagaatgaagtcacagaaagtaccacagctcccaacaatatccccttgaaggctcgtgccagcaatcctttcaagaaaaggaaacaggaaaccaacttggatcaaataggtagcaacacgaagcaagtttcaattgcaagtgatgtagagatattggataccttgtgtgcctccaccagtaatgtatcttcaatagttatcgatgatagccccagaaaaagaaaaaatgatattcacttggatgacatagagagtgagagcagtcaggaacaggtttctgtggtgacaagcacacagatagaatcttcagacatactgacttcagaatctcaggaaagtgtaaattctaagctatccaagcaaaagaggatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03430 map03430
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

325

Amino Acids

35.73

Weight (kDa)

5.95

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18090 AT1G18090
fragaria_vesca FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080
malus_domestica MD14G1234100.v1.1
prunus_persica Prupe.5G230300_v2.0.a1
pyrus_communis pycom14g19510
rosa_chinensis RchiOBHm_Chr7g0178771
rosa_laevigata RLG00000005417
rosa_multiflora Rmu_sc0015029.1_g000001
rosa_roxburghii Rroxscaffold_3G00274630
rosa_rugosa Rorug06G0419200
rosa_samantha Rh7AG018700 Rh7AG018800 Rh7BG018100 Rh7CG018900 Rh7DG018700
rosa_wichuraiana Rw7G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AciI CCGC 1 cut(s) 572
AclWI GGATC 2 cut(s) 392, 711
AcsI RAATTY 1 cut(s) 946
AcuI CTGAAG 4 cut(s) 162, 345, 894, 909
AfaI GTAC 1 cut(s) 625
AfiI CCNNNNNNNGG 4 cut(s) 47, 267, 268, 652
AgsI TTSAA 6 cut(s) 115, 562, 652, 676, 735, 795
AjnI CCWGG 1 cut(s) 40
AloI GAACNNNNNNTCC 2 cut(s) 264, 296
AluBI AGCT 7 cut(s) 62, 173, 250, 471, 569, 632, 955
AluI AGCT 7 cut(s) 62, 173, 250, 471, 569, 632, 955
Alw26I GTCTC 2 cut(s) 226, 434
AlwI GGATC 2 cut(s) 392, 711
AoxI GGCC 2 cut(s) 354, 477
ApeKI GCWGC 3 cut(s) 170, 173, 569
ApoI RAATTY 1 cut(s) 946
AspS9I GGNCC 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 898
AvaII GGWCC 1 cut(s) 337
BarI GAAGNNNNNNTAC 2 cut(s) 775, 807
BauI CACGAG 1 cut(s) 657
BbvI GCAGC 3 cut(s) 160, 182, 556
BccI CCATC 3 cut(s) 40, 260, 307
BciT130I CCWGG 1 cut(s) 42
BciVI GTATCC 1 cut(s) 754
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 2 cut(s) 226, 434
BfaI CTAG 2 cut(s) 290, 384
BfmI CTRYAG 2 cut(s) 174, 519
BfuI GTATCC 1 cut(s) 754
BglII AGATCT 2 cut(s) 155, 434
BisI GCNGC 4 cut(s) 171, 174, 570, 573
BlsI GCNGC 4 cut(s) 172, 175, 571, 574
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 42
BmrI ACTGGG 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 366
BoxI GACNNNNGTC 1 cut(s) 391
BpuEI CTTGAG 1 cut(s) 177
Bsa29I ATCGAT 1 cut(s) 804
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 69, 283
BsaWI WCCGGW 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 267, 268, 652
Bse1I ACTGG 4 cut(s) 372, 378, 536, 780
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 42
BseCI ATCGAT 1 cut(s) 804
BseDI CCNNGG 2 cut(s) 69, 283
BseGI GGATG 1 cut(s) 850
BseLI CCNNNNNNNGG 4 cut(s) 47, 267, 268, 652
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 429, 947
BseNI ACTGG 4 cut(s) 372, 378, 536, 780
BseXI GCAGC 3 cut(s) 160, 182, 556
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 2 cut(s) 356, 479
BshVI ATCGAT 1 cut(s) 804
BsiSI CCGG 1 cut(s) 495
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 4 cut(s) 47, 267, 268, 652
BsmAI GTCTC 2 cut(s) 226, 434
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 2 cut(s) 356, 479
Bso31I GGTCTC 1 cut(s) 226
Bsp143I GATC 6 cut(s) 94, 155, 361, 397, 434, 703
BspACI CCGC 1 cut(s) 572
BspANI GGCC 2 cut(s) 356, 479
BspCNI CTCAG 2 cut(s) 430, 946
BspDI ATCGAT 1 cut(s) 804
BspLI GGNNCC 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 2 cut(s) 392, 711
BspTNI GGTCTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 4 cut(s) 372, 378, 536, 780
BssECI CCNNGG 2 cut(s) 69, 283
BssMI GATC 6 cut(s) 94, 155, 361, 397, 434, 703
BssNAI GTATAC 1 cut(s) 199
BssSI CACGAG 1 cut(s) 657
BssT1I CCWWGG 2 cut(s) 69, 283
Bst1107I GTATAC 1 cut(s) 199
Bst2BI CACGAG 1 cut(s) 657
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 451
BstC8I GCNNGC 3 cut(s) 16, 189, 664
BstDEI CTNAG 5 cut(s) 78, 91, 438, 933, 951
BstF5I GGATG 1 cut(s) 850
BstKTI GATC 6 cut(s) 97, 158, 364, 400, 437, 706
BstMAI GTCTC 2 cut(s) 226, 434
BstMBI GATC 6 cut(s) 94, 155, 361, 397, 434, 703
BstMWI GCNNNNNNNGC 1 cut(s) 961
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 191
BstPAI GACNNNNGTC 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 40
BstSFI CTRYAG 2 cut(s) 174, 519
BstV1I GCAGC 3 cut(s) 160, 182, 556
BstX2I RGATCY 3 cut(s) 155, 397, 434
BstXI CCANNNNNNTGG 1 cut(s) 349
BstYI RGATCY 3 cut(s) 155, 397, 434
BstZ17I GTATAC 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 804
BsuI GTATCC 1 cut(s) 754
BsuRI GGCC 2 cut(s) 356, 479
BsuTUI ATCGAT 1 cut(s) 804
BtsCI GGATG 1 cut(s) 850
Cac8I GCNNGC 3 cut(s) 16, 189, 664
Cfr13I GGNCC 1 cut(s) 337
ClaI ATCGAT 1 cut(s) 804
Csp6I GTAC 1 cut(s) 624
CviAII CATG 1 cut(s) 188
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 5 cut(s) 78, 91, 438, 933, 951
DpnI GATC 6 cut(s) 96, 157, 363, 399, 436, 705
DpnII GATC 6 cut(s) 94, 155, 361, 397, 434, 703
Eco130I CCWWGG 2 cut(s) 69, 283
Eco147I AGGCCT 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 337
Eco57I CTGAAG 4 cut(s) 162, 345, 894, 909
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 69, 283
ErhI CCWWGG 2 cut(s) 69, 283
FaeI CATG 1 cut(s) 191
FaqI GGGAC 1 cut(s) 244
FatI CATG 1 cut(s) 187
FauNDI CATATG 1 cut(s) 228
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 4 cut(s) 171, 174, 570, 573
FokI GGATG 1 cut(s) 857
Fsp4HI GCNGC 4 cut(s) 171, 174, 570, 573
FspBI CTAG 2 cut(s) 290, 384
GluI GCNGC 4 cut(s) 171, 174, 570, 573
HaeIII GGCC 2 cut(s) 356, 479
HapII CCGG 1 cut(s) 495
Hin1II CATG 1 cut(s) 191
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 5 cut(s) 203, 257, 532, 905, 929
HpaII CCGG 1 cut(s) 495
HphI GGTGA 1 cut(s) 898
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 7 cut(s) 164, 208, 397, 432, 439, 913, 928
Hpy188III TCNNGA 4 cut(s) 384, 676, 869, 935
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 5 cut(s) 38, 118, 320, 606, 646
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4V TGCA 5 cut(s) 121, 176, 317, 458, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 961
HpyF3I CTNAG 5 cut(s) 78, 91, 438, 933, 951
Hsp92II CATG 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 6 cut(s) 94, 155, 361, 397, 434, 703
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 3 cut(s) 160, 182, 556
MaeI CTAG 2 cut(s) 290, 384
MaeIII GTNAC 2 cut(s) 613, 886
MalI GATC 6 cut(s) 96, 157, 363, 399, 436, 705
MboI GATC 6 cut(s) 94, 155, 361, 397, 434, 703
MboII GAAGA 3 cut(s) 155, 783, 900
MfeI CAATTG 2 cut(s) 318, 735
MflI RGATCY 3 cut(s) 155, 397, 434
MluCI AATT 9 cut(s) 45, 116, 216, 318, 332, 414, 588, 735, 946
MlyI GAGTC 2 cut(s) 197, 266
MnlI CCTC 3 cut(s) 346, 784, 963
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 2 cut(s) 347, 843
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 1 cut(s) 495
MspR9I CCNGG 1 cut(s) 42
MunI CAATTG 2 cut(s) 318, 735
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 961
NdeI CATATG 1 cut(s) 228
NdeII GATC 6 cut(s) 94, 155, 361, 397, 434, 703
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 2 cut(s) 613, 886
NspI RCATGY 1 cut(s) 191
PaeI GCATGC 1 cut(s) 191
PceI AGGCCT 1 cut(s) 356
PfeI GAWTC 3 cut(s) 532, 905, 929
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 4 cut(s) 172, 175, 571, 574
PleI GAGTC 2 cut(s) 197, 265
PpsI GAGTC 2 cut(s) 197, 265
PshAI GACNNNNGTC 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 337
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 3 cut(s) 155, 397, 434
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 2 cut(s) 347, 843
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 4 cut(s) 171, 174, 570, 573
Sau3AI GATC 6 cut(s) 94, 155, 361, 397, 434, 703
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 2 cut(s) 197, 266
ScrFI CCNGG 1 cut(s) 42
SfcI CTRYAG 2 cut(s) 174, 519
SinI GGWCC 1 cut(s) 337
SmiMI CAYNNNNRTG 2 cut(s) 347, 843
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
SphI GCATGC 1 cut(s) 191
Sse9I AATT 9 cut(s) 45, 116, 216, 318, 332, 414, 588, 735, 946
SseBI AGGCCT 1 cut(s) 356
SsiI CCGC 1 cut(s) 572
SspMI CTAG 2 cut(s) 290, 384
StuI AGGCCT 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 2 cut(s) 69, 283
TaaI ACNGT 1 cut(s) 451
TaqI TCGA 2 cut(s) 599, 804
TaqII GACCGA 1 cut(s) 381
TasI AATT 9 cut(s) 45, 116, 216, 318, 332, 414, 588, 735, 946
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 3 cut(s) 532, 905, 929
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TseFI GTSAC 2 cut(s) 613, 886
TseI GCWGC 3 cut(s) 170, 173, 569
Tsp45I GTSAC 2 cut(s) 613, 886
TspDTI ATGAA 3 cut(s) 561, 579, 624
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 1 cut(s) 946
XbaI TCTAGA 1 cut(s) 383
XceI RCATGY 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 2 cut(s) 290, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.