Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010147

Physical Location & Seq

Genomic Coordinates Reverse (-)

1519214 .. 1523460

Gene Structure 4247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG018700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGCATCAAAGATCTCCTCAGATTCATCAAACCCTACATTCAAATCATTCATATCAAGAAATACGCCGGCAAACGAGTGGGTATTGATGCCTATTCATGGCTTCACAAAGGAGCATATTCATGTAGCATGGAGCTGTGTATGAATTCGAATAGCGAAAGGAGATTGAAATACATTGACTATTTTATGCACCGGATACATATGCTTCAACACCATGAGATAACCCCAGTGGTGGTTTTTGATGGTGGCAATGTACCATGTAAGGCTGCCACTGGGGATGAACGCCACAGGAGAAGGAAGAAATTTCATGATTTAGCAATGGAAAAAGTAGAAGAAGGGAATGTTAGAGCTGCCACCGAGCTCTTTCAGAGGGCGGTGAGTGTAACTCCATCTATGGCACATGAGCTGATAAAGATTCTGAGATCCGAGAACATTGAATTTGTTGTAGCTCCATATGAGGCTGATGCGCAGCTAGCATACCTGGCCAGTCTTGAAGCAGAAAAGGGTGGAATTGCAGCAGTCATCACTGAGGATAGTGATCTAGTGGCATATGGCTGCCAAGCTGTGCTTATTGCATGTCTTACAACGGTGACATTTTGCTGTACAGAAAAGCAGAATCCAGTTTTAGATGAAAAGAAGTATTTGAATGAAGCTGCAGCACTTGGAAAACTAATTGTTCCTTCGACAAAGAATGAAGTCACAGAAAGTACCACAGCTCCCAACAATATCCCCTTGAAGGCTCGTGCCAGCAATCCTTTCAAGAAAAGGAAACAGGAAACCAACTTGGATCAAATAGGTAGCAACACGAAGCAAGTTTCAATTGCAAGTGATGTAGAGATATTGGATACCTTGTGTGCCTCCACCAGTAATGTATCTTCAATAGTTATCGATGATAGCCCCAGAAAAAGAAAAAATGATATTCACTTGGATGACATAGAGAGTGAGAGCAGTCAGGAACAGGTTTCTGTGGTGACAAGCACACAGATAGAATCTTCAGACATACTGACTTCAGAATCTCAGGAAAGTGTCAATTCTAAGCTATCCAAGCAAAAGAGGATGGTGAAAAATGACAAGTTGAAGAGAAACAGCTGTTCAACAAATAAAAAAGGCAGTATCTTGAATTTCTATTCACCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

379

Amino Acids

42.3

Weight (kDa)

8.25

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPG_N	PF00752	1 - 101	8.7e-21	XPG N-terminal domain
XPG_I	PF00867	144 - 194	1.5e-11	XPG I-region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18090 AT1G18090
fragaria_vesca	FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080
malus_domestica	MD14G1234100.v1.1
prunus_persica	Prupe.5G230300_v2.0.a1
pyrus_communis	pycom14g19510
rosa_chinensis	RchiOBHm_Chr7g0178771
rosa_laevigata	RLG00000005417
rosa_multiflora	Rmu_sc0015029.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274630
rosa_rugosa	Rorug06G0419200
rosa_samantha	Rh7AG018700 Rh7AG018800 Rh7BG018100 Rh7CG018900 Rh7DG018700
rosa_wichuraiana	Rw7G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	468
AciI	CCGC	1 cut(s)	374
AclWI	GGATC	2 cut(s)	417, 795
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	4 cut(s)	145, 302, 437, 1120
AcuI	CTGAAG	2 cut(s)	978, 993
AfaI	GTAC	3 cut(s)	255, 604, 709
AfiI	CCNNNNNNNGG	3 cut(s)	99, 232, 736
AjnI	CCWGG	1 cut(s)	480
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	417, 795
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	7 cut(s)	266, 350, 469, 515, 555, 653, 656
ApoI	RAATTY	4 cut(s)	145, 302, 437, 1120
AspLEI	GCGC	1 cut(s)	469
AsuHPI	GGTGA	5 cut(s)	388, 601, 982, 1072, 1122
AsuII	TTCGAA	1 cut(s)	149
AsuNHI	GCTAGC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	363
BarI	GAAGNNNNNNTAC	2 cut(s)	859, 891
BauI	CACGAG	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	7 cut(s)	253, 337, 481, 527, 542, 640, 668
BccI	CCATC	3 cut(s)	236, 397, 1051
BciT130I	CCWGG	1 cut(s)	482
BciVI	GTATCC	2 cut(s)	189, 838
BfaI	CTAG	2 cut(s)	473, 542
BfmI	CTRYAG	1 cut(s)	654
BfuI	GTATCC	2 cut(s)	189, 838
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	7 cut(s)	267, 351, 470, 516, 556, 654, 657
BlsI	GCNGC	7 cut(s)	268, 352, 471, 517, 557, 655, 658
Bme1390I	CCNGG	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	482
BmrI	ACTGGG	2 cut(s)	221, 282
BmsI	GCATC	3 cut(s)	15, 79, 454
BmtI	GCTAGC	1 cut(s)	476
BmuI	ACTGGG	2 cut(s)	221, 282
BplI	GAGNNNNNCTC	2 cut(s)	370, 402
Bpu14I	TTCGAA	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	888
BsaBI	GATNNNNATC	1 cut(s)	537
BsaWI	WCCGGW	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 232, 736
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	5 cut(s)	227, 277, 486, 620, 864
Bse3DI	GCAATG	2 cut(s)	256, 324
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	482
BseCI	ATCGAT	1 cut(s)	888
BseGI	GGATG	3 cut(s)	283, 934, 1062
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	3 cut(s)	99, 232, 736
BseMI	GCAATG	2 cut(s)	256, 324
BseMII	CTCAG	4 cut(s)	34, 410, 519, 1031
BseNI	ACTGG	5 cut(s)	227, 277, 486, 620, 864
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	7 cut(s)	253, 337, 481, 527, 542, 640, 668
BshFI	GGCC	1 cut(s)	485
BshVI	ATCGAT	1 cut(s)	888
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	69, 193
BslI	CCNNNNNNNGG	3 cut(s)	99, 232, 736
BsnI	GGCC	1 cut(s)	485
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	602
Bsp143I	GATC	4 cut(s)	13, 422, 538, 787
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	4 cut(s)	33, 411, 520, 1030
BspDI	ATCGAT	1 cut(s)	888
BspHI	TCATGA	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	658
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	2 cut(s)	417, 795
BspT104I	TTCGAA	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	256, 324
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	602
BsrI	ACTGG	5 cut(s)	227, 277, 486, 620, 864
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	4 cut(s)	13, 422, 538, 787
BssSI	CACGAG	1 cut(s)	741
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	1 cut(s)	1073
BstAUI	TGTACA	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	70, 474, 748
BstDEI	CTNAG	5 cut(s)	20, 419, 528, 1017, 1035
BstF5I	GGATG	3 cut(s)	283, 934, 1062
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	4 cut(s)	16, 425, 541, 790
BstMBI	GATC	4 cut(s)	13, 422, 538, 787
BstMWI	GCNNNNNNNGC	3 cut(s)	473, 482, 1045
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	7 cut(s)	253, 337, 481, 527, 542, 640, 668
BstX2I	RGATCY	2 cut(s)	13, 422
BstYI	RGATCY	2 cut(s)	13, 422
Bsu15I	ATCGAT	1 cut(s)	888
BsuI	GTATCC	2 cut(s)	189, 838
BsuRI	GGCC	1 cut(s)	485
BsuTUI	ATCGAT	1 cut(s)	888
BtsCI	GGATG	3 cut(s)	283, 934, 1062
BtsIMutI	CAGTG	3 cut(s)	234, 270, 525
Cac8I	GCNNGC	3 cut(s)	70, 474, 748
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	888
Csp6I	GTAC	3 cut(s)	254, 603, 708
CviAII	CATG	8 cut(s)	99, 123, 130, 215, 258, 308, 401, 576
CviQI	GTAC	3 cut(s)	254, 603, 708
DdeI	CTNAG	5 cut(s)	20, 419, 528, 1017, 1035
DpnI	GATC	4 cut(s)	15, 424, 540, 789
DpnII	GATC	4 cut(s)	13, 422, 538, 787
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	1073
EarI	CTCTTC	1 cut(s)	1073
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	2 cut(s)	978, 993
EcoICRI	GAGCTC	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	8 cut(s)	102, 126, 133, 218, 261, 311, 404, 579
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FatI	CATG	8 cut(s)	98, 122, 129, 214, 257, 307, 400, 575
FauNDI	CATATG	3 cut(s)	201, 454, 550
Fnu4HI	GCNGC	7 cut(s)	267, 351, 470, 516, 556, 654, 657
FokI	GGATG	3 cut(s)	290, 941, 1069
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	7 cut(s)	267, 351, 470, 516, 556, 654, 657
FspBI	CTAG	2 cut(s)	473, 542
FspI	TGCGCA	1 cut(s)	468
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	7 cut(s)	267, 351, 470, 516, 556, 654, 657
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	2 cut(s)	69, 193
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	8 cut(s)	102, 126, 133, 218, 261, 311, 404, 579
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HinfI	GANTC	5 cut(s)	24, 415, 616, 989, 1013
HpaII	CCGG	2 cut(s)	69, 193
HphI	GGTGA	5 cut(s)	388, 601, 982, 1072, 1122
Hpy188I	TCNGA	6 cut(s)	23, 369, 420, 427, 997, 1012
Hpy188III	TCNNGA	7 cut(s)	58, 308, 491, 760, 953, 1019, 1117
HpyAV	CCTTC	4 cut(s)	288, 329, 690, 730
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4V	TGCA	5 cut(s)	190, 515, 575, 656, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	473, 482, 1045
HpyF3I	CTNAG	5 cut(s)	20, 419, 528, 1017, 1035
Hsp92II	CATG	8 cut(s)	102, 126, 133, 218, 261, 311, 404, 579
HspAI	GCGC	1 cut(s)	467
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	13, 422, 538, 787
LmnI	GCTCC	4 cut(s)	113, 133, 454, 721
Lsp1109I	GCAGC	7 cut(s)	253, 337, 481, 527, 542, 640, 668
LweI	GCATC	3 cut(s)	15, 79, 454
MaeI	CTAG	2 cut(s)	473, 542
MaeIII	GTNAC	4 cut(s)	382, 589, 697, 970
MalI	GATC	4 cut(s)	15, 424, 540, 789
MboI	GATC	4 cut(s)	13, 422, 538, 787
MboII	GAAGA	5 cut(s)	310, 344, 867, 984, 1090
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	2 cut(s)	13, 422
MhlI	GDGCHC	1 cut(s)	363
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	8 cut(s)	145, 302, 437, 510, 672, 819, 1030, 1120
MluNI	TGGCCA	1 cut(s)	485
MnlI	CCTC	6 cut(s)	29, 363, 451, 523, 868, 1047
Mox20I	TGGCCA	1 cut(s)	485
MroNI	GCCGGC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	485
MslI	CAYNNNNRTG	3 cut(s)	121, 927, 1135
Msp20I	TGGCCA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	1089
MspI	CCGG	2 cut(s)	69, 193
MspR9I	CCNGG	1 cut(s)	482
MunI	CAATTG	1 cut(s)	819
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	3 cut(s)	473, 482, 1045
NaeI	GCCGGC	1 cut(s)	70
NdeI	CATATG	3 cut(s)	201, 454, 550
NdeII	GATC	4 cut(s)	13, 422, 538, 787
NgoMIV	GCCGGC	1 cut(s)	68
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	8 cut(s)	102, 126, 133, 218, 261, 311, 404, 579
NmuCI	GTSAC	3 cut(s)	589, 697, 970
NsbI	TGCGCA	1 cut(s)	468
NspI	RCATGY	1 cut(s)	579
NspV	TTCGAA	1 cut(s)	149
PagI	TCATGA	1 cut(s)	307
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	5 cut(s)	24, 415, 616, 989, 1013
PkrI	GCNGC	7 cut(s)	268, 352, 471, 517, 557, 655, 658
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	2 cut(s)	13, 422
PvuII	CAGCTG	1 cut(s)	1089
RsaI	GTAC	3 cut(s)	255, 604, 709
RsaNI	GTAC	3 cut(s)	254, 603, 708
RseI	CAYNNNNRTG	3 cut(s)	121, 927, 1135
SacI	GAGCTC	1 cut(s)	363
SatI	GCNGC	7 cut(s)	267, 351, 470, 516, 556, 654, 657
Sau3AI	GATC	4 cut(s)	13, 422, 538, 787
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	3 cut(s)	15, 79, 454
SfcI	CTRYAG	1 cut(s)	654
SfuI	TTCGAA	1 cut(s)	149
SmiMI	CAYNNNNRTG	3 cut(s)	121, 927, 1135
Sse9I	AATT	8 cut(s)	145, 302, 437, 510, 672, 819, 1030, 1120
SsiI	CCGC	1 cut(s)	374
SspMI	CTAG	2 cut(s)	473, 542
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	589
TaqI	TCGA	3 cut(s)	149, 683, 888
TasI	AATT	8 cut(s)	145, 302, 437, 510, 672, 819, 1030, 1120
TatI	WGTACW	1 cut(s)	602
TfiI	GAWTC	5 cut(s)	24, 415, 616, 989, 1013
TscAI	CASTG	3 cut(s)	234, 277, 532
TseFI	GTSAC	3 cut(s)	589, 697, 970
TseI	GCWGC	7 cut(s)	266, 350, 469, 515, 555, 653, 656
Tsp45I	GTSAC	3 cut(s)	589, 697, 970
TspRI	CASTG	3 cut(s)	234, 277, 532
XapI	RAATTY	4 cut(s)	145, 302, 437, 1120
XceI	RCATGY	1 cut(s)	579
XspI	CTAG	2 cut(s)	473, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.