Rh7AG018800

exonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010147
Physical Location & Seq
Reverse (-)
1259653 .. 1262545
2893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG018800.1

Sequence Viewer

Length: 882 bp
ATGGGCATCAAAGATCTCCTCAGATTCATCAAACCCTACATTCAAATCATTCATATCAAGAAATACGCCGGCAAACGAGTGGGTATTGATGCCTATTCATGGCTTCACAAAGGAGCATATTCATGTAGCATGGAGCTGTGTATGAATTCGAATAGCGAAAGGAGATTGAAATACATTGACTATTTTATGCACCGGATACATATGCTTCAACACCATGAGATAACCCCAGTGGTGGTTTTTGATGGTGGCAATGTACCATGTAAGGCTGCCACTGGGGATGAACGCCACAGGAGAAGGAAGAAATTTCATGATTTAGCAATGGAAAAAGTAGAAGAAGGGAATGTTAGAGCTGCCACCGAGCTCTTTCAGAGGGCGGTGAGTGTAACTCCATCTATGGCACATGAGCTGATAAAGATTCTGAGATCCGAGAACATTGAATTTGTTGTAGCTCCATATGAGGCTGATGCGCAGCTAGCATACCTGGCCAGTCTTGAAGCAGAAAAGGGTGGAATTGCAGCAGTCATCACTGAGGATAGTGATCTAGTGGCATATGGCTGCCAAGCTATAATCTTTAAGATGGACCAATTTGGCAATGGTGGCGAGTTACTGCTGGACAATGTTTTTAATCAAGTGGACCGCACACCTTCCTTCCAAAATTTTGACCTCGAATTATTTAGAGGTATGTGTGTCTTGGCTGGCTGTGATTTCCTTCCATCTGTTCCTGGAATTGGGATTGGTAAAGCTTATGCCTTGGTTTCTAAGTATCAAAACTTAGATCGCGCTTTATCAGTTTTGAAATTGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAGATCTTTCAGAGAAGCAGCTGCAGTTTTCCAGCATGCTCAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03430 map03430
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

293

Amino Acids

33.04

Weight (kDa)

7.14

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_N PF00752 1 - 101 5.2e-21 XPG N-terminal domain
XPG_I PF00867 144 - 235 4.6e-15 XPG I-region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18090 AT1G18090
fragaria_vesca FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080
malus_domestica MD14G1234100.v1.1
prunus_persica Prupe.5G230300_v2.0.a1
pyrus_communis pycom14g19510
rosa_chinensis RchiOBHm_Chr7g0178771
rosa_laevigata RLG00000005417
rosa_multiflora Rmu_sc0015029.1_g000001
rosa_roxburghii Rroxscaffold_3G00274630
rosa_rugosa Rorug06G0419200
rosa_samantha Rh7AG018700 Rh7AG018800 Rh7BG018100 Rh7CG018900 Rh7DG018700
rosa_wichuraiana Rw7G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 468
AccII CGCG 1 cut(s) 780
AciI CCGC 2 cut(s) 374, 637
AclWI GGATC 1 cut(s) 417
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 4 cut(s) 145, 302, 437, 655
AcuI CTGAAG 1 cut(s) 843
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 3 cut(s) 99, 232, 728
AgsI TTSAA 6 cut(s) 44, 169, 209, 437, 494, 796
AjnI CCWGG 2 cut(s) 480, 721
AluBI AGCT 9 cut(s) 136, 350, 361, 406, 449, 472, 563, 743, 854
AluI AGCT 9 cut(s) 136, 350, 361, 406, 449, 472, 563, 743, 854
Alw21I GWGCWC 1 cut(s) 363
AlwI GGATC 1 cut(s) 417
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 7 cut(s) 266, 350, 469, 515, 555, 851, 854
ApoI RAATTY 4 cut(s) 145, 302, 437, 655
AspLEI GCGC 2 cut(s) 469, 782
AspS9I GGNCC 2 cut(s) 580, 634
AsuHPI GGTGA 1 cut(s) 388
AsuII TTCGAA 1 cut(s) 149
AsuNHI GCTAGC 1 cut(s) 472
AvaII GGWCC 2 cut(s) 580, 634
BalI TGGCCA 1 cut(s) 485
BanII GRGCYC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 7 cut(s) 253, 337, 481, 527, 542, 841, 863
BccI CCATC 4 cut(s) 236, 397, 571, 721
BciT130I CCWGG 2 cut(s) 482, 723
BciVI GTATCC 1 cut(s) 189
BfaI CTAG 2 cut(s) 473, 542
BfmI CTRYAG 1 cut(s) 855
BfuI GTATCC 1 cut(s) 189
BglII AGATCT 2 cut(s) 13, 836
BisI GCNGC 7 cut(s) 267, 351, 470, 516, 556, 852, 855
BlsI GCNGC 7 cut(s) 268, 352, 471, 517, 557, 853, 856
Bme1390I CCNGG 2 cut(s) 482, 723
Bme18I GGWCC 2 cut(s) 580, 634
BmgT120I GGNCC 2 cut(s) 580, 634
BmrFI CCNGG 2 cut(s) 482, 723
BmrI ACTGGG 2 cut(s) 221, 282
BmsI GCATC 3 cut(s) 15, 79, 454
BmtI GCTAGC 1 cut(s) 476
BmuI ACTGGG 2 cut(s) 221, 282
BplI GAGNNNNNCTC 2 cut(s) 370, 402
Bpu14I TTCGAA 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 858
BsaBI GATNNNNATC 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 750
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 232, 728
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 3 cut(s) 227, 277, 486
Bse3DI GCAATG 3 cut(s) 256, 324, 598
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 2 cut(s) 482, 723
BseDI CCNNGG 1 cut(s) 750
BseGI GGATG 1 cut(s) 283
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 99, 232, 728
BseMI GCAATG 3 cut(s) 256, 324, 598
BseMII CTCAG 3 cut(s) 34, 410, 519
BseNI ACTGG 3 cut(s) 227, 277, 486
BseRI GAGGAG 1 cut(s) 8
BseXI GCAGC 7 cut(s) 253, 337, 481, 527, 542, 841, 863
Bsh1236I CGCG 1 cut(s) 780
BshFI GGCC 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 2 cut(s) 69, 193
BslI CCNNNNNNNGG 3 cut(s) 99, 232, 728
BsnI GGCC 1 cut(s) 485
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 5 cut(s) 13, 422, 538, 775, 836
BspACI CCGC 2 cut(s) 374, 637
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 3 cut(s) 33, 411, 520
BspFNI CGCG 1 cut(s) 780
BspHI TCATGA 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 859
BspOI GCTAGC 1 cut(s) 476
BspPI GGATC 1 cut(s) 417
BspT104I TTCGAA 1 cut(s) 149
BsrDI GCAATG 3 cut(s) 256, 324, 598
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 3 cut(s) 227, 277, 486
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 750
BssMI GATC 5 cut(s) 13, 422, 538, 775, 836
BssT1I CCWWGG 1 cut(s) 750
Bst2UI CCWGG 2 cut(s) 482, 723
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 4 cut(s) 70, 474, 697, 870
BstDEI CTNAG 5 cut(s) 20, 419, 528, 759, 772
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 780
BstHHI GCGC 2 cut(s) 469, 782
BstKTI GATC 5 cut(s) 16, 425, 541, 778, 839
BstMBI GATC 5 cut(s) 13, 422, 538, 775, 836
BstMWI GCNNNNNNNGC 3 cut(s) 473, 482, 597
BstNI CCWGG 2 cut(s) 482, 723
BstNSI RCATGY 1 cut(s) 872
BstSCI CCNGG 2 cut(s) 480, 721
BstSFI CTRYAG 1 cut(s) 855
BstUI CGCG 1 cut(s) 780
BstV1I GCAGC 7 cut(s) 253, 337, 481, 527, 542, 841, 863
BstX2I RGATCY 3 cut(s) 13, 422, 836
BstYI RGATCY 3 cut(s) 13, 422, 836
BsuI GTATCC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 485
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 3 cut(s) 234, 270, 525
Cac8I GCNNGC 4 cut(s) 70, 474, 697, 870
CciI TCATGA 1 cut(s) 307
CfoI GCGC 2 cut(s) 469, 782
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 580, 634
Csp6I GTAC 1 cut(s) 254
CviAII CATG 8 cut(s) 99, 123, 130, 215, 258, 308, 401, 869
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 5 cut(s) 20, 419, 528, 759, 772
DpnI GATC 5 cut(s) 15, 424, 540, 777, 838
DpnII GATC 5 cut(s) 13, 422, 538, 775, 836
EaeI YGGCCR 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 750
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 580, 634
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 843
EcoICRI GAGCTC 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 480, 721
EcoT14I CCWWGG 1 cut(s) 750
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 750
FaeI CATG 8 cut(s) 102, 126, 133, 218, 261, 311, 404, 872
FatI CATG 8 cut(s) 98, 122, 129, 214, 257, 307, 400, 868
FauNDI CATATG 3 cut(s) 201, 454, 550
Fnu4HI GCNGC 7 cut(s) 267, 351, 470, 516, 556, 852, 855
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 7 cut(s) 267, 351, 470, 516, 556, 852, 855
FspBI CTAG 2 cut(s) 473, 542
FspI TGCGCA 1 cut(s) 468
GlaI GCGC 2 cut(s) 468, 781
GluI GCNGC 7 cut(s) 267, 351, 470, 516, 556, 852, 855
HaeIII GGCC 1 cut(s) 485
HapII CCGG 2 cut(s) 69, 193
HhaI GCGC 2 cut(s) 469, 782
Hin1II CATG 8 cut(s) 102, 126, 133, 218, 261, 311, 404, 872
Hin6I GCGC 2 cut(s) 467, 780
HinP1I GCGC 2 cut(s) 467, 780
HindIII AAGCTT 1 cut(s) 741
HinfI GANTC 2 cut(s) 24, 415
HpaII CCGG 2 cut(s) 69, 193
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 5 cut(s) 23, 369, 420, 427, 845
Hpy188III TCNNGA 3 cut(s) 58, 308, 491
Hpy8I GTNNAC 1 cut(s) 634
HpyAV CCTTC 6 cut(s) 288, 329, 654, 658, 719, 799
HpyCH4V TGCA 4 cut(s) 190, 515, 802, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 473, 482, 597
HpyF3I CTNAG 5 cut(s) 20, 419, 528, 759, 772
Hsp92II CATG 8 cut(s) 102, 126, 133, 218, 261, 311, 404, 872
HspAI GCGC 2 cut(s) 467, 780
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Kzo9I GATC 5 cut(s) 13, 422, 538, 775, 836
LmnI GCTCC 3 cut(s) 113, 133, 454
Lsp1109I GCAGC 7 cut(s) 253, 337, 481, 527, 542, 841, 863
LweI GCATC 3 cut(s) 15, 79, 454
MaeI CTAG 2 cut(s) 473, 542
MaeIII GTNAC 2 cut(s) 382, 603
MalI GATC 5 cut(s) 15, 424, 540, 777, 838
MboI GATC 5 cut(s) 13, 422, 538, 775, 836
MboII GAAGA 3 cut(s) 310, 344, 836
MflI RGATCY 3 cut(s) 13, 422, 836
MhlI GDGCHC 1 cut(s) 363
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 9 cut(s) 145, 302, 437, 510, 584, 655, 668, 726, 797
MluNI TGGCCA 1 cut(s) 485
MnlI CCTC 6 cut(s) 29, 363, 451, 523, 671, 674
Mox20I TGGCCA 1 cut(s) 485
MroNI GCCGGC 1 cut(s) 68
MscI TGGCCA 1 cut(s) 485
MseI TTAA 2 cut(s) 573, 624
MslI CAYNNNNRTG 1 cut(s) 121
Msp20I TGGCCA 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 854
MspI CCGG 2 cut(s) 69, 193
MspR9I CCNGG 2 cut(s) 482, 723
MvaI CCWGG 2 cut(s) 482, 723
MvnI CGCG 1 cut(s) 780
MwoI GCNNNNNNNGC 3 cut(s) 473, 482, 597
NaeI GCCGGC 1 cut(s) 70
NdeI CATATG 3 cut(s) 201, 454, 550
NdeII GATC 5 cut(s) 13, 422, 538, 775, 836
NgoMIV GCCGGC 1 cut(s) 68
NheI GCTAGC 1 cut(s) 472
NlaIII CATG 8 cut(s) 102, 126, 133, 218, 261, 311, 404, 872
NsbI TGCGCA 1 cut(s) 468
NspI RCATGY 1 cut(s) 872
NspV TTCGAA 1 cut(s) 149
PaeI GCATGC 1 cut(s) 872
PagI TCATGA 1 cut(s) 307
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 24, 415
PfoI TCCNGGA 1 cut(s) 721
PkrI GCNGC 7 cut(s) 268, 352, 471, 517, 557, 853, 856
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 480, 721
PspGI CCWGG 2 cut(s) 480, 721
PspPI GGNCC 2 cut(s) 580, 634
PstI CTGCAG 1 cut(s) 859
PsuI RGATCY 3 cut(s) 13, 422, 836
PvuII CAGCTG 1 cut(s) 854
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 121
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 573, 624
SatI GCNGC 7 cut(s) 267, 351, 470, 516, 556, 852, 855
Sau3AI GATC 5 cut(s) 13, 422, 538, 775, 836
Sau96I GGNCC 2 cut(s) 580, 634
ScrFI CCNGG 2 cut(s) 482, 723
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 3 cut(s) 15, 79, 454
SfcI CTRYAG 1 cut(s) 855
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 2 cut(s) 580, 634
SmiMI CAYNNNNRTG 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 873
SmoI CTYRAG 1 cut(s) 873
SphI GCATGC 1 cut(s) 872
Sse9I AATT 9 cut(s) 145, 302, 437, 510, 584, 655, 668, 726, 797
SsiI CCGC 2 cut(s) 374, 637
SspMI CTAG 2 cut(s) 473, 542
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 2 cut(s) 480, 721
StyI CCWWGG 1 cut(s) 750
TaqI TCGA 2 cut(s) 149, 666
TasI AATT 9 cut(s) 145, 302, 437, 510, 584, 655, 668, 726, 797
TfiI GAWTC 2 cut(s) 24, 415
Tru1I TTAA 2 cut(s) 573, 624
Tru9I TTAA 2 cut(s) 573, 624
TscAI CASTG 3 cut(s) 234, 277, 532
TseI GCWGC 7 cut(s) 266, 350, 469, 515, 555, 851, 854
TspDTI ATGAA 7 cut(s) 16, 41, 87, 111, 158, 294, 296
TspRI CASTG 3 cut(s) 234, 277, 532
VpaK11BI GGWCC 2 cut(s) 580, 634
XapI RAATTY 4 cut(s) 145, 302, 437, 655
XceI RCATGY 1 cut(s) 872
XcmI CCANNNNNNNNNTGG 1 cut(s) 590
XspI CTAG 2 cut(s) 473, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.