Rorug06G0419200

exonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010147
Physical Location & Seq
Forward (+)
55815383 .. 55815924
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0419200.1

Sequence Viewer

Length: 318 bp
ATGCATGTAATTGCCCACGACCCTTATGCTCTGGCAGATCATGCTCGTGCCATAGATGTGGAGCTTGTGAGCATTGATGAGGTTTTGGCCACTACTTACCTGGATATGCATCTTATTGCTGCTACAAATAAGATTCTCAACGATGAGACGTTTACAAAGATAAAGAAAGGAGTAGGAATTGTGAATGTTGCACGTGGTGGAGTTATCGATGAAGATGCACTAGTCAAGGCACTTGTGTTCCAGAGTCGCTCAGGTACGAAGTGTGAACGTGAAAGGCGTGTTTTAGAAAAATTTGCTGGGTGCACTAAGAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03430 map03430
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

105

Amino Acids

11.61

Weight (kDa)

6.9

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 1 - 78 9.4e-16 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18090 AT1G18090
fragaria_vesca FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080
malus_domestica MD14G1234100.v1.1
prunus_persica Prupe.5G230300_v2.0.a1
pyrus_communis pycom14g19510
rosa_chinensis RchiOBHm_Chr7g0178771
rosa_laevigata RLG00000005417
rosa_multiflora Rmu_sc0015029.1_g000001
rosa_roxburghii Rroxscaffold_3G00274630
rosa_rugosa Rorug06G0419200
rosa_samantha Rh7AG018700 Rh7AG018800 Rh7BG018100 Rh7CG018900 Rh7DG018700
rosa_wichuraiana Rw7G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 2 cut(s) 290, 311
AcvI CACGTG 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 1 cut(s) 256
AhlI ACTAGT 1 cut(s) 220
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 140
Alw44I GTGCAC 1 cut(s) 301
AoxI GGCC 1 cut(s) 87
ApaLI GTGCAC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 2 cut(s) 290, 311
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 89
BauI CACGAG 1 cut(s) 45
BbrPI CACGTG 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 106
BcgI CGANNNNNNTGC 4 cut(s) 8, 42, 197, 231
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 140
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 1 cut(s) 221
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 118, 205
Bpu10I CCTNAGC 1 cut(s) 250
Bsa29I ATCGAT 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 1 cut(s) 101
BseCI ATCGAT 1 cut(s) 207
BseJI GATNNNNATC 1 cut(s) 108
BseMII CTCAG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 296
BshFI GGCC 1 cut(s) 89
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 37
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 263
BspDI ATCGAT 1 cut(s) 207
BssMI GATC 1 cut(s) 37
BssSI CACGAG 1 cut(s) 45
Bst2BI CACGAG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 250, 306
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 1 cut(s) 89
BsuTUI ATCGAT 1 cut(s) 207
ClaI ATCGAT 1 cut(s) 207
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 5, 41
CviJI RGCY 2 cut(s) 64, 89
CviKI_1 RGCY 2 cut(s) 64, 89
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 2 cut(s) 250, 306
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DraIII CACNNNGTG 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 87
Eco72I CACGTG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 99
EcoT22I ATGCAT 2 cut(s) 6, 111
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 2 cut(s) 8, 44
FaiI YATR 5 cut(s) 6, 27, 42, 53, 107
FatI CATG 2 cut(s) 4, 40
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 221
GluI GCNGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 300
HaeIII GGCC 1 cut(s) 89
Hin1II CATG 2 cut(s) 8, 44
HinfI GANTC 2 cut(s) 133, 244
Hpy166II GTNNAC 3 cut(s) 153, 266, 303
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 3 cut(s) 153, 266, 303
HpyCH4IV ACGT 3 cut(s) 149, 193, 268
HpyCH4V TGCA 5 cut(s) 4, 109, 191, 218, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 250, 306
HpySE526I ACGT 3 cut(s) 149, 193, 268
Hsp92II CATG 2 cut(s) 8, 44
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 6 cut(s) 17, 86, 113, 237, 254, 282
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 2 cut(s) 118, 205
MaeI CTAG 1 cut(s) 221
MaeII ACGT 3 cut(s) 149, 193, 268
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 305
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 4 cut(s) 9, 177, 290, 311
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 253
MnlI CCTC 1 cut(s) 73
Mox20I TGGCCA 1 cut(s) 89
Mph1103I ATGCAT 2 cut(s) 6, 111
MscI TGGCCA 1 cut(s) 89
MslI CAYNNNNRTG 2 cut(s) 45, 56
Msp20I TGGCCA 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 37
NlaIII CATG 2 cut(s) 8, 44
NsiI ATGCAT 2 cut(s) 6, 111
NspI RCATGY 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 252
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
PpsI GAGTC 1 cut(s) 252
Ppu21I YACGTR 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 99
PspCI CACGTG 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 99
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 2 cut(s) 45, 56
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 37
SchI GAGTC 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 305
SetI ASST 7 cut(s) 66, 84, 102, 152, 196, 256, 271
SfaNI GCATC 2 cut(s) 118, 205
SmiMI CAYNNNNRTG 2 cut(s) 45, 56
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 4 cut(s) 9, 177, 290, 311
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 99
TaiI ACGT 3 cut(s) 152, 196, 271
TaqI TCGA 1 cut(s) 207
TasI AATT 4 cut(s) 9, 177, 290, 311
TfiI GAWTC 1 cut(s) 133
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 225
VneI GTGCAC 1 cut(s) 301
XapI RAATTY 2 cut(s) 290, 311
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XspI CTAG 1 cut(s) 221
Zsp2I ATGCAT 2 cut(s) 6, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.