Rh7BG018100

exonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010147
Physical Location & Seq
Reverse (-)
1181247 .. 1185518
4272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG018100.1

Sequence Viewer

Length: 1521 bp
ATGGGCATCAAAGATCTCCTCAGATTCATCAAACCCTACATTCAAATCATTCATATCAAGAAATACGCCGGCAAACGAGTGGGTATTGATGCCTATTCATGGCTTCACAAAGGAGCATATTCATGTAGCATGGAGCTGTGTATGAATTCGAATAGCGAAAGGAGATTGAAATACATTGACTATTTTATGCACCGGATACATATGCTTCAACACCATGAGATAACCCCAGTGGTGGTTTTTGATGGTGGCAATGTACCATGTAAGGCTGCCACTGGGGATGAACGCCACAGGAGAAGGAAGAAATTTCATGATTTGGCAATGGAAAAAGTAGAAGAAGGGAATGTTAGAGCTGCCACCGAGCTCTTTCAGAGGGCGGTGAGTGTAACTCCATCTATGGCACATGAGCTGATAAAGATTCTGAGATCCGAGAACATTGAATTTGTTGTAGCTCCATATGAGGCTGATGCGCAGCTAGCATACCTGGCCAGTCTTGAAGCAGAAAAGGGTGGAATTGCAGCAGTCATCACTGAGGATAGTGATCTAGTGGCATATGGCTGCCAAGCTGCTTTATCAGTTTTGAAATTGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAGATCTTTCAGAGAAGCAGCTGCAGTTTTCCAGCATGCTCAAATATACGACTCTGACAAGAAAATTGTCAAGCATATGAGACCCATACCACAAGAGCTTGTGGAGTCCCTTGATGGAGAACTTGATTTCCTTGGACCAGAAATCCCTTCATCAATAGCCATTGCAATTGCTGAAGGAAAATTGGACCCCATAAGTATGGAGGCCTTTGATCATTTCCCCAGTTCCAGTTCTAGACATCGGTCAGATCCCATTAAGAGCCAAATTACTCATCACTTTCAGAGATCTGAGACTGCTACTGTATCTGCACAAGTCAGTAGCTTTGTGGCCTTTTCCCATAAAACCAGAAAACAAGATATTACTACGCCTACAGAAAAGCAGAATCCAGTTTTAGATGAAAAGAAGTATTTGAATGAAGCTGCAGCACTTGGAAAACTAATTGTTCCTTCGACAAAGAATGAAGTCACAGAAAGTACCACAGCTCCCAACAATATCCCCTTGAAGGCTCGTGCCAGCAATCCTTTCAAGAAAAGGAAACAGGAAACCAACTTGGATCAAATAGGTAGCAACACGAAGCAAGTTTCAATTGCAAGTGATGTAGAGATATTGGATACCTTGTGTGCCTCCACCAGTAACGTATCTTCAATAGTTATCGATGATAGCCCCAGAAAAAGAAAAAATGATATTCACTTGGATGACATAGAGAGTGAGAGCAGTCAGGAACAGGTTTCTGTGGTGACAAGCACACAGATAGAATCTTCAGACATACTGACTTCAGAATCTCAGGAAAGTGTAAATTCTAAGCTATCCAAGCAAAAGAGGATGGTGAAAAATGACAAGTTGAAGAGAAACAGCTGTTCAACAAATAAAAAAGGCAGTATCTTGAATTTCTATTCACCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03430 map03430
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

506

Amino Acids

56.57

Weight (kDa)

7.68

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_N PF00752 1 - 101 1.4e-20 XPG N-terminal domain
XPG_I PF00867 144 - 200 1.7e-11 XPG I-region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18090 AT1G18090
fragaria_vesca FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080 FvH4_5g17080
malus_domestica MD14G1234100.v1.1
prunus_persica Prupe.5G230300_v2.0.a1
pyrus_communis pycom14g19510
rosa_chinensis RchiOBHm_Chr7g0178771
rosa_laevigata RLG00000005417
rosa_multiflora Rmu_sc0015029.1_g000001
rosa_roxburghii Rroxscaffold_3G00274630
rosa_rugosa Rorug06G0419200
rosa_samantha Rh7AG018700 Rh7AG018800 Rh7BG018100 Rh7CG018900 Rh7DG018700
rosa_wichuraiana Rw7G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 468
AciI CCGC 1 cut(s) 374
AclWI GGATC 3 cut(s) 417, 857, 1176
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 5 cut(s) 145, 302, 437, 1411, 1501
AcuI CTGAAG 4 cut(s) 627, 810, 1359, 1374
AfaI GTAC 2 cut(s) 255, 1090
AfiI CCNNNNNNNGG 3 cut(s) 99, 232, 1117
AjnI CCWGG 1 cut(s) 480
AloI GAACNNNNNNTCC 2 cut(s) 729, 761
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 691, 899
AlwI GGATC 3 cut(s) 417, 857, 1176
AoxI GGCC 3 cut(s) 483, 819, 942
ApoI RAATTY 5 cut(s) 145, 302, 437, 1411, 1501
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 2 cut(s) 752, 802
AsuHPI GGTGA 4 cut(s) 388, 1363, 1453, 1503
AsuII TTCGAA 1 cut(s) 149
AsuNHI GCTAGC 1 cut(s) 472
AvaII GGWCC 2 cut(s) 752, 802
BalI TGGCCA 1 cut(s) 485
BanII GRGCYC 1 cut(s) 363
BarI GAAGNNNNNNTAC 2 cut(s) 1240, 1272
BauI CACGAG 1 cut(s) 1122
Bbv12I GWGCWC 1 cut(s) 363
BccI CCATC 4 cut(s) 236, 397, 725, 1432
BciT130I CCWGG 1 cut(s) 482
BciVI GTATCC 2 cut(s) 189, 1219
BclI TGATCA 1 cut(s) 826
BcoDI GTCTC 2 cut(s) 691, 899
BfaI CTAG 3 cut(s) 473, 542, 849
BfmI CTRYAG 3 cut(s) 639, 984, 1035
BfuI GTATCC 2 cut(s) 189, 1219
BglII AGATCT 3 cut(s) 13, 620, 899
Bme1390I CCNGG 1 cut(s) 482
Bme18I GGWCC 2 cut(s) 752, 802
BmgT120I GGNCC 2 cut(s) 752, 802
BmiI GGNNCC 1 cut(s) 804
BmrFI CCNGG 1 cut(s) 482
BmrI ACTGGG 3 cut(s) 221, 282, 831
BmsI GCATC 3 cut(s) 15, 79, 454
BmtI GCTAGC 1 cut(s) 476
BmuI ACTGGG 3 cut(s) 221, 282, 831
BoxI GACNNNNGTC 1 cut(s) 856
BplI GAGNNNNNCTC 2 cut(s) 370, 402
Bpu14I TTCGAA 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 1269
BsaBI GATNNNNATC 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 1 cut(s) 748
BsaWI WCCGGW 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 1081, 1111
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 232, 1117
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 7 cut(s) 227, 277, 486, 837, 843, 1001, 1245
Bse3DI GCAATG 3 cut(s) 256, 324, 777
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 482
BseCI ATCGAT 1 cut(s) 1269
BseDI CCNNGG 1 cut(s) 748
BseGI GGATG 3 cut(s) 283, 1315, 1443
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 99, 232, 1117
BseMI GCAATG 3 cut(s) 256, 324, 777
BseMII CTCAG 5 cut(s) 34, 410, 519, 894, 1412
BseNI ACTGG 7 cut(s) 227, 277, 486, 837, 843, 1001, 1245
BseRI GAGGAG 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 906
BshFI GGCC 3 cut(s) 485, 821, 944
BshVI ATCGAT 1 cut(s) 1269
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 2 cut(s) 69, 193
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 3 cut(s) 99, 232, 1117
BsmAI GTCTC 2 cut(s) 691, 899
BsmFI GGGAC 1 cut(s) 709
BsnI GGCC 3 cut(s) 485, 821, 944
Bso31I GGTCTC 1 cut(s) 691
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 8 cut(s) 13, 422, 538, 620, 826, 862, 899, 1168
BspACI CCGC 1 cut(s) 374
BspANI GGCC 3 cut(s) 485, 821, 944
BspCNI CTCAG 5 cut(s) 33, 411, 520, 895, 1411
BspDI ATCGAT 1 cut(s) 1269
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 804
BspMAI CTGCAG 2 cut(s) 643, 1039
BspOI GCTAGC 1 cut(s) 476
BspPI GGATC 3 cut(s) 417, 857, 1176
BspT104I TTCGAA 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 691
BsrDI GCAATG 3 cut(s) 256, 324, 777
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 7 cut(s) 227, 277, 486, 837, 843, 1001, 1245
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 748
BssMI GATC 8 cut(s) 13, 422, 538, 620, 826, 862, 899, 1168
BssSI CACGAG 1 cut(s) 1122
BssT1I CCWWGG 1 cut(s) 748
Bst2BI CACGAG 1 cut(s) 1122
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 1 cut(s) 916
Bst6I CTCTTC 1 cut(s) 1454
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 4 cut(s) 70, 474, 654, 1129
BstDEI CTNAG 6 cut(s) 20, 419, 528, 903, 1398, 1416
BstF5I GGATG 3 cut(s) 283, 1315, 1443
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 8 cut(s) 16, 425, 541, 623, 829, 865, 902, 1171
BstMAI GTCTC 2 cut(s) 691, 899
BstMBI GATC 8 cut(s) 13, 422, 538, 620, 826, 862, 899, 1168
BstMWI GCNNNNNNNGC 3 cut(s) 473, 482, 1426
BstNI CCWGG 1 cut(s) 482
BstNSI RCATGY 1 cut(s) 656
BstPAI GACNNNNGTC 1 cut(s) 856
BstSCI CCNGG 1 cut(s) 480
BstSFI CTRYAG 3 cut(s) 639, 984, 1035
BstX2I RGATCY 5 cut(s) 13, 422, 620, 862, 899
BstXI CCANNNNNNTGG 1 cut(s) 814
BstYI RGATCY 5 cut(s) 13, 422, 620, 862, 899
Bsu15I ATCGAT 1 cut(s) 1269
BsuI GTATCC 2 cut(s) 189, 1219
BsuRI GGCC 3 cut(s) 485, 821, 944
BsuTUI ATCGAT 1 cut(s) 1269
BtsCI GGATG 3 cut(s) 283, 1315, 1443
BtsIMutI CAGTG 3 cut(s) 234, 270, 525
Cac8I GCNNGC 4 cut(s) 70, 474, 654, 1129
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 752, 802
ClaI ATCGAT 1 cut(s) 1269
Csp6I GTAC 2 cut(s) 254, 1089
CviAII CATG 8 cut(s) 99, 123, 130, 215, 258, 308, 401, 653
CviQI GTAC 2 cut(s) 254, 1089
DdeI CTNAG 6 cut(s) 20, 419, 528, 903, 1398, 1416
DpnI GATC 8 cut(s) 15, 424, 540, 622, 828, 864, 901, 1170
DpnII GATC 8 cut(s) 13, 422, 538, 620, 826, 862, 899, 1168
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 1454
EarI CTCTTC 1 cut(s) 1454
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 748
Eco147I AGGCCT 1 cut(s) 821
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 2 cut(s) 752, 802
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 4 cut(s) 627, 810, 1359, 1374
EcoICRI GAGCTC 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 748
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 748
FaeI CATG 8 cut(s) 102, 126, 133, 218, 261, 311, 404, 656
FaqI GGGAC 1 cut(s) 709
FatI CATG 8 cut(s) 98, 122, 129, 214, 257, 307, 400, 652
FauNDI CATATG 4 cut(s) 201, 454, 550, 693
FbaI TGATCA 1 cut(s) 826
FokI GGATG 3 cut(s) 290, 1322, 1450
FriOI GRGCYC 1 cut(s) 363
FspBI CTAG 3 cut(s) 473, 542, 849
FspI TGCGCA 1 cut(s) 468
GlaI GCGC 1 cut(s) 468
HaeIII GGCC 3 cut(s) 485, 821, 944
HapII CCGG 2 cut(s) 69, 193
HhaI GCGC 1 cut(s) 469
Hin1II CATG 8 cut(s) 102, 126, 133, 218, 261, 311, 404, 656
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HinfI GANTC 7 cut(s) 24, 415, 668, 722, 997, 1370, 1394
HpaII CCGG 2 cut(s) 69, 193
HphI GGTGA 4 cut(s) 388, 1363, 1453, 1503
Hpy188III TCNNGA 8 cut(s) 58, 308, 491, 849, 1141, 1334, 1400, 1498
HpyAV CCTTC 7 cut(s) 288, 329, 583, 774, 785, 1071, 1111
HpyCH4III ACNGT 1 cut(s) 916
HpyCH4IV ACGT 1 cut(s) 1251
HpyCH4V TGCA 8 cut(s) 190, 515, 586, 641, 782, 923, 1037, 1205
HpyF10VI GCNNNNNNNGC 3 cut(s) 473, 482, 1426
HpyF3I CTNAG 6 cut(s) 20, 419, 528, 903, 1398, 1416
HpySE526I ACGT 1 cut(s) 1251
Hsp92II CATG 8 cut(s) 102, 126, 133, 218, 261, 311, 404, 656
HspAI GCGC 1 cut(s) 467
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 8 cut(s) 13, 422, 538, 620, 826, 862, 899, 1168
LmnI GCTCC 4 cut(s) 113, 133, 454, 1102
LweI GCATC 3 cut(s) 15, 79, 454
MaeI CTAG 3 cut(s) 473, 542, 849
MaeII ACGT 1 cut(s) 1251
MaeIII GTNAC 4 cut(s) 382, 1078, 1247, 1351
MalI GATC 8 cut(s) 15, 424, 540, 622, 828, 864, 901, 1170
MboI GATC 8 cut(s) 13, 422, 538, 620, 826, 862, 899, 1168
MboII GAAGA 6 cut(s) 310, 344, 620, 1248, 1365, 1471
MfeI CAATTG 2 cut(s) 783, 1200
MflI RGATCY 5 cut(s) 13, 422, 620, 862, 899
MhlI GDGCHC 1 cut(s) 363
MlsI TGGCCA 1 cut(s) 485
MluNI TGGCCA 1 cut(s) 485
MlyI GAGTC 2 cut(s) 662, 731
MnlI CCTC 7 cut(s) 29, 363, 451, 523, 811, 1249, 1428
Mox20I TGGCCA 1 cut(s) 485
MroNI GCCGGC 1 cut(s) 68
MscI TGGCCA 1 cut(s) 485
MseI TTAA 1 cut(s) 870
MslI CAYNNNNRTG 4 cut(s) 121, 812, 1308, 1516
Msp20I TGGCCA 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 638, 1470
MspI CCGG 2 cut(s) 69, 193
MspR9I CCNGG 1 cut(s) 482
MunI CAATTG 2 cut(s) 783, 1200
MvaI CCWGG 1 cut(s) 482
MwoI GCNNNNNNNGC 3 cut(s) 473, 482, 1426
NaeI GCCGGC 1 cut(s) 70
NdeI CATATG 4 cut(s) 201, 454, 550, 693
NdeII GATC 8 cut(s) 13, 422, 538, 620, 826, 862, 899, 1168
NgoMIV GCCGGC 1 cut(s) 68
NheI GCTAGC 1 cut(s) 472
NlaIII CATG 8 cut(s) 102, 126, 133, 218, 261, 311, 404, 656
NlaIV GGNNCC 1 cut(s) 804
NmuCI GTSAC 2 cut(s) 1078, 1351
NsbI TGCGCA 1 cut(s) 468
NspI RCATGY 1 cut(s) 656
NspV TTCGAA 1 cut(s) 149
PaeI GCATGC 1 cut(s) 656
PagI TCATGA 1 cut(s) 307
PceI AGGCCT 1 cut(s) 821
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 5 cut(s) 24, 415, 997, 1370, 1394
PleI GAGTC 2 cut(s) 662, 730
PpsI GAGTC 2 cut(s) 662, 730
PshAI GACNNNNGTC 1 cut(s) 856
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 480
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 1 cut(s) 804
PspPI GGNCC 2 cut(s) 752, 802
PstI CTGCAG 2 cut(s) 643, 1039
PsuI RGATCY 5 cut(s) 13, 422, 620, 862, 899
PvuII CAGCTG 2 cut(s) 638, 1470
RsaI GTAC 2 cut(s) 255, 1090
RsaNI GTAC 2 cut(s) 254, 1089
RseI CAYNNNNRTG 4 cut(s) 121, 812, 1308, 1516
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 870
Sau3AI GATC 8 cut(s) 13, 422, 538, 620, 826, 862, 899, 1168
Sau96I GGNCC 2 cut(s) 752, 802
SchI GAGTC 2 cut(s) 662, 731
ScrFI CCNGG 1 cut(s) 482
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 3 cut(s) 15, 79, 454
SfcI CTRYAG 3 cut(s) 639, 984, 1035
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 2 cut(s) 752, 802
SmiMI CAYNNNNRTG 4 cut(s) 121, 812, 1308, 1516
SphI GCATGC 1 cut(s) 656
SseBI AGGCCT 1 cut(s) 821
SsiI CCGC 1 cut(s) 374
SspMI CTAG 3 cut(s) 473, 542, 849
SstI GAGCTC 1 cut(s) 363
StuI AGGCCT 1 cut(s) 821
StyD4I CCNGG 1 cut(s) 480
StyI CCWWGG 1 cut(s) 748
TaaI ACNGT 1 cut(s) 916
TaiI ACGT 1 cut(s) 1254
TaqI TCGA 3 cut(s) 149, 1064, 1269
TaqII GACCGA 1 cut(s) 846
TfiI GAWTC 5 cut(s) 24, 415, 997, 1370, 1394
Tru1I TTAA 1 cut(s) 870
Tru9I TTAA 1 cut(s) 870
TscAI CASTG 3 cut(s) 234, 277, 532
TseFI GTSAC 2 cut(s) 1078, 1351
Tsp45I GTSAC 2 cut(s) 1078, 1351
TspRI CASTG 3 cut(s) 234, 277, 532
VpaK11BI GGWCC 2 cut(s) 752, 802
XapI RAATTY 5 cut(s) 145, 302, 437, 1411, 1501
XbaI TCTAGA 1 cut(s) 848
XceI RCATGY 1 cut(s) 656
XspI CTAG 3 cut(s) 473, 542, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.