Prupe.5G232900_v2.0.a1

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014745
Physical Location & Seq
Forward (+)
17711702 .. 17713196
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G232900.1

Sequence Viewer

Length: 720 bp
ATGCTGGGAGCAATCATACCCACTCGTACTTGGTTTGGAGTTCTCATGTCTGCTCTTGGGGTTTCTATGCTGGAATGCAGTGGATCACCTCCAAACGTTGGTGATCTTTTGAACTTCTTGAGTGCACTATTTTTTGGTATTCACATGCTTCGAACAGAGCATATTTCAAGAAGCACAAAGAAAGAAAACTTCTTAGCAATTCTTGGATATGAGGTTTGTGTTGTTGCTCTCTTATCCACAATCTGGGTTTTCATTGGAGGGTGGTTAGATGGTGCCCGCTATTCCAACCAATCATCATGGATATGGACATGGACAGAGTTATGGGACTGGATTGTTGCATTTCCATGGATACCTGCACTTTATACTGGTGCATTTTCAACTGGGTTATGCTTATGGATTGAGATTGCAGCTATGCGTGATGTTTCAGCGACAGAAACAGCCATAATTTACGGGATGGAGCCGGTGTGGGGTGCCGGTTTCGCATGGTTTCTACTTGGTGAAAGGTGGGGTACACTTGGATGGATAGGGGCTGCTCTTGCGCTTGGTGGAAGCTTAGTGGTGCAGATATTTGGGTCCTCACCTCCCCAAGAATTTAGGGTGGCTGAAGATGGTAATGAGAAAGGCGATCTCCGACGACTTCCCACTGAGCATAAATTACAAAATGGTCTCTCTACTTCCCCGATTGTTGTCAGATCCAAAAAGGATGTTTCAGAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

240

Amino Acids

26.42

Weight (kDa)

5.23

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014745)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17290 FvH4_5g17290 FvH4_5g17290
malus_domestica MD06G1226600.v1.1
prunus_persica Prupe.5G232800_v2.0.a1 Prupe.5G232900_v2.0.a1
pyrus_communis pycom06g20290
rosa_chinensis RchiOBHm_Chr7g0178481
rosa_laevigata RLG00000005443
rosa_multiflora Rmu_sc0010235.1_g000003
rosa_roxburghii Rroxscaffold_3G00274860
rosa_rugosa Rorug06G0417500
rosa_samantha Rh7AG016000 Rh7BG015600 Rh7CG016300 Rh7DG016000
rosa_wichuraiana Rw7G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 361
AccB1I GGYRCC 2 cut(s) 272, 470
AccB7I CCANNNNNTGG 2 cut(s) 98, 243
AciI CCGC 1 cut(s) 277
AclI AACGTT 1 cut(s) 96
AclWI GGATC 2 cut(s) 91, 687
AcsI RAATTY 2 cut(s) 590, 713
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 2 cut(s) 28, 511
AfiI CCNNNNNNNGG 3 cut(s) 98, 243, 467
AgsI TTSAA 3 cut(s) 112, 168, 378
AluBI AGCT 2 cut(s) 410, 552
AluI AGCT 2 cut(s) 410, 552
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 671
Alw44I GTGCAC 1 cut(s) 123
AlwI GGATC 2 cut(s) 91, 687
ApaLI GTGCAC 1 cut(s) 123
ApeKI GCWGC 2 cut(s) 407, 530
ApoI RAATTY 2 cut(s) 590, 713
AspLEI GCGC 1 cut(s) 541
AspS9I GGNCC 1 cut(s) 573
AsuHPI GGTGA 4 cut(s) 78, 113, 509, 570
AsuII TTCGAA 1 cut(s) 151
AvaII GGWCC 1 cut(s) 573
BaeGI GKGCMC 2 cut(s) 127, 277
BanI GGYRCC 2 cut(s) 272, 470
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 419, 517
BccI CCATC 4 cut(s) 263, 448, 513, 602
BciVI GTATCC 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 671
BfuAI ACCTGC 1 cut(s) 361
BfuI GTATCC 1 cut(s) 342
BisI GCNGC 2 cut(s) 408, 531
BlsI GCNGC 2 cut(s) 409, 532
Bme18I GGWCC 1 cut(s) 573
BmgT120I GGNCC 1 cut(s) 573
BmiI GGNNCC 4 cut(s) 274, 459, 472, 574
BmrI ACTGGG 1 cut(s) 390
BmuI ACTGGG 1 cut(s) 390
Bpu14I TTCGAA 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 344
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 243, 467
Bse118I RCCGGY 2 cut(s) 460, 473
Bse1I ACTGG 3 cut(s) 332, 370, 385
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 3 cut(s) 459, 524, 709
BseLI CCNNNNNNNGG 3 cut(s) 98, 243, 467
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 3 cut(s) 332, 370, 385
BseSI GKGCMC 2 cut(s) 127, 277
BseXI GCAGC 2 cut(s) 419, 517
BseYI CCCAGC 1 cut(s) 4
BsgI GTGCAG 2 cut(s) 339, 581
BshNI GGYRCC 2 cut(s) 272, 470
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 2 cut(s) 461, 474
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 3 cut(s) 98, 243, 467
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 671
Bsp119I TTCGAA 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 127, 277
Bsp143I GATC 4 cut(s) 83, 103, 625, 692
Bsp19I CCATGG 1 cut(s) 344
BspACI CCGC 1 cut(s) 277
BspCNI CTCAG 1 cut(s) 637
BspLI GGNNCC 4 cut(s) 274, 459, 472, 574
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 2 cut(s) 91, 687
BspT104I TTCGAA 1 cut(s) 151
BspT107I GGYRCC 2 cut(s) 272, 470
BspTNI GGTCTC 1 cut(s) 671
BsrFI RCCGGY 2 cut(s) 460, 473
BsrI ACTGG 3 cut(s) 332, 370, 385
BssAI RCCGGY 2 cut(s) 460, 473
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 4 cut(s) 83, 103, 625, 692
BssT1I CCWWGG 1 cut(s) 344
BstBI TTCGAA 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 3 cut(s) 193, 553, 645
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 3 cut(s) 459, 524, 709
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 4 cut(s) 86, 106, 628, 695
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 4 cut(s) 83, 103, 625, 692
BstMWI GCNNNNNNNGC 2 cut(s) 479, 536
BstNSI RCATGY 1 cut(s) 148
BstSLI GKGCMC 2 cut(s) 127, 277
BstV1I GCAGC 2 cut(s) 419, 517
BstX2I RGATCY 1 cut(s) 692
BstYI RGATCY 1 cut(s) 692
BsuI GTATCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 3 cut(s) 459, 524, 709
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 2 cut(s) 85, 642
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 1 cut(s) 541
Cfr10I RCCGGY 2 cut(s) 460, 473
Cfr13I GGNCC 1 cut(s) 573
Csp6I GTAC 2 cut(s) 27, 510
CviAII CATG 6 cut(s) 46, 145, 297, 309, 345, 483
CviJI RGCY 6 cut(s) 410, 440, 460, 530, 552, 602
CviKI_1 RGCY 6 cut(s) 410, 440, 460, 530, 552, 602
CviQI GTAC 2 cut(s) 27, 510
DdeI CTNAG 3 cut(s) 193, 553, 645
DpnI GATC 4 cut(s) 85, 105, 627, 694
DpnII GATC 4 cut(s) 83, 103, 625, 692
Eco130I CCWWGG 1 cut(s) 344
Eco31I GGTCTC 1 cut(s) 671
Eco47I GGWCC 1 cut(s) 573
Eco57I CTGAAG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 573
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 6 cut(s) 49, 148, 300, 312, 348, 486
FaqI GGGAC 1 cut(s) 338
FatI CATG 6 cut(s) 45, 144, 296, 308, 344, 482
FauI CCCGC 1 cut(s) 284
Fnu4HI GCNGC 2 cut(s) 408, 531
FokI GGATG 3 cut(s) 466, 531, 716
Fsp4HI GCNGC 2 cut(s) 408, 531
GlaI GCGC 1 cut(s) 540
GluI GCNGC 2 cut(s) 408, 531
GsaI CCCAGC 1 cut(s) 8
HapII CCGG 2 cut(s) 461, 474
HhaI GCGC 1 cut(s) 541
Hin1II CATG 6 cut(s) 49, 148, 300, 312, 348, 486
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HindIII AAGCTT 1 cut(s) 550
HpaII CCGG 2 cut(s) 461, 474
HphI GGTGA 4 cut(s) 78, 113, 509, 570
Hpy166II GTNNAC 2 cut(s) 125, 512
Hpy188I TCNGA 3 cut(s) 632, 692, 712
Hpy188III TCNNGA 2 cut(s) 118, 168
Hpy8I GTNNAC 2 cut(s) 125, 512
Hpy99I CGWCG 1 cut(s) 636
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 7 cut(s) 78, 125, 338, 356, 371, 407, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 536
HpyF3I CTNAG 3 cut(s) 193, 553, 645
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 6 cut(s) 49, 148, 300, 312, 348, 486
HspAI GCGC 1 cut(s) 539
Kzo9I GATC 4 cut(s) 83, 103, 625, 692
LmnI GCTCC 2 cut(s) 8, 457
LpnPI CCDG 8 cut(s) 56, 229, 313, 351, 366, 366, 474, 487
Lsp1109I GCAGC 2 cut(s) 419, 517
MaeII ACGT 1 cut(s) 96
MalI GATC 4 cut(s) 85, 105, 627, 694
MboI GATC 4 cut(s) 83, 103, 625, 692
MboII GAAGA 1 cut(s) 617
MflI RGATCY 1 cut(s) 692
MhlI GDGCHC 2 cut(s) 127, 277
MluCI AATT 5 cut(s) 198, 444, 590, 653, 713
MmeI TCCRAC 2 cut(s) 309, 655
MnlI CCTC 5 cut(s) 99, 205, 251, 586, 591
MseI TTAA 1 cut(s) 718
MslI CAYNNNNRTG 3 cut(s) 301, 343, 517
MspI CCGG 2 cut(s) 461, 474
Mva1269I GAATGC 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 479, 536
NcoI CCATGG 1 cut(s) 344
NdeII GATC 4 cut(s) 83, 103, 625, 692
NlaIII CATG 6 cut(s) 49, 148, 300, 312, 348, 486
NlaIV GGNNCC 4 cut(s) 274, 459, 472, 574
NspI RCATGY 1 cut(s) 148
NspV TTCGAA 1 cut(s) 151
PctI GAATGC 1 cut(s) 80
PflMI CCANNNNNTGG 2 cut(s) 98, 243
PkrI GCNGC 2 cut(s) 409, 532
PpuMI RGGWCCY 1 cut(s) 573
Psp1406I AACGTT 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 573
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 4 cut(s) 274, 459, 472, 574
PspPI GGNCC 1 cut(s) 573
PspPPI RGGWCCY 1 cut(s) 573
PsuI RGATCY 1 cut(s) 692
RsaI GTAC 2 cut(s) 28, 511
RsaNI GTAC 2 cut(s) 27, 510
RseI CAYNNNNRTG 3 cut(s) 301, 343, 517
SaqAI TTAA 1 cut(s) 718
SatI GCNGC 2 cut(s) 408, 531
Sau3AI GATC 4 cut(s) 83, 103, 625, 692
Sau96I GGNCC 1 cut(s) 573
SduI GDGCHC 2 cut(s) 127, 277
SetI ASST 8 cut(s) 91, 99, 216, 355, 412, 506, 554, 583
SfuI TTCGAA 1 cut(s) 151
SinI GGWCC 1 cut(s) 573
SmiMI CAYNNNNRTG 3 cut(s) 301, 343, 517
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 5 cut(s) 198, 444, 590, 653, 713
SsiI CCGC 1 cut(s) 277
StyI CCWWGG 1 cut(s) 344
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 151
TasI AATT 5 cut(s) 198, 444, 590, 653, 713
Tru1I TTAA 1 cut(s) 718
Tru9I TTAA 1 cut(s) 718
TscAI CASTG 2 cut(s) 85, 649
TseI GCWGC 2 cut(s) 407, 530
TspDTI ATGAA 1 cut(s) 241
TspRI CASTG 2 cut(s) 85, 649
Van91I CCANNNNNTGG 2 cut(s) 98, 243
VneI GTGCAC 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 573
XapI RAATTY 2 cut(s) 590, 713
XceI RCATGY 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.