Rh7BG015600

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014745
Physical Location & Seq
Reverse (-)
993366 .. 993928
563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG015600.1

Sequence Viewer

Length: 381 bp
ATGTCTGCTCTTGGGGTTGGTATGCTGGAATGCAGCGGATCACCTCCAAATGTTGGAGATCTCTTCAACTTCTTGAGTGCAATATTTTTTGGAATTCACATGCTTCGAACTGAGCATATTTCAAGAAGCACAAAGAAGGAGAACTTCTTAGCAATTCTTGGATATGAGGTCAGTGTTGTTGCTGTCTTATCCACAATCTGGGTTTTTATTGGAGGGTGGTTTGATGGTGCCCAAAGTTCCAACCAATTAACATGGACGTGGACAGAGATGTGGGATTGGCTTGTTGCATTTCCATGGATACCTGCACTTTATACTGGTGCATTTTCAACTGGGATATGCTTATGGATTGAGGTACTATTATTGTACAGACTGAATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

126

Amino Acids

14.18

Weight (kDa)

4.86

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014745)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17290 FvH4_5g17290 FvH4_5g17290
malus_domestica MD06G1226600.v1.1
prunus_persica Prupe.5G232800_v2.0.a1 Prupe.5G232900_v2.0.a1
pyrus_communis pycom06g20290
rosa_chinensis RchiOBHm_Chr7g0178481
rosa_laevigata RLG00000005443
rosa_multiflora Rmu_sc0010235.1_g000003
rosa_roxburghii Rroxscaffold_3G00274860
rosa_rugosa Rorug06G0417500
rosa_samantha Rh7AG016000 Rh7BG015600 Rh7CG016300 Rh7DG016000
rosa_wichuraiana Rw7G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 227
AccB7I CCANNNNNTGG 2 cut(s) 53, 198
AciI CCGC 1 cut(s) 36
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 93
AfaI GTAC 2 cut(s) 354, 365
AfiI CCNNNNNNNGG 2 cut(s) 53, 198
AgsI TTSAA 3 cut(s) 67, 123, 327
AjiI CACGTC 1 cut(s) 258
AlwI GGATC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 33
AsuII TTCGAA 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 218
BciVI GTATCC 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 310
BfuI GTATCC 1 cut(s) 291
BglII AGATCT 1 cut(s) 58
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
BmgBI CACGTC 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 229
BmrI ACTGGG 1 cut(s) 339
BmuI ACTGGG 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 293
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 198
Bse1I ACTGG 2 cut(s) 319, 334
BseDI CCNNGG 1 cut(s) 293
BseLI CCNNNNNNNGG 2 cut(s) 53, 198
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 2 cut(s) 319, 334
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 1 cut(s) 45
BsgI GTGCAG 1 cut(s) 288
BshNI GGYRCC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 53, 198
BsmI GAATGC 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 232
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 2 cut(s) 38, 58
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 227
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 2 cut(s) 319, 334
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 2 cut(s) 38, 58
BssT1I CCWWGG 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 363
BstBI TTCGAA 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 111, 148
BstDSI CCRYGG 1 cut(s) 293
BstKTI GATC 2 cut(s) 41, 61
BstMBI GATC 2 cut(s) 38, 58
BstNSI RCATGY 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuI GTATCC 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 293
BtrI CACGTC 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 310
Csp6I GTAC 2 cut(s) 353, 364
CviAII CATG 3 cut(s) 100, 252, 294
CviJI RGCY 1 cut(s) 280
CviKI_1 RGCY 1 cut(s) 280
CviQI GTAC 2 cut(s) 353, 364
DdeI CTNAG 2 cut(s) 111, 148
DpnI GATC 2 cut(s) 40, 60
DpnII GATC 2 cut(s) 38, 58
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 3 cut(s) 103, 255, 297
FaiI YATR 9 cut(s) 23, 101, 117, 165, 253, 295, 312, 337, 343
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 3 cut(s) 99, 251, 293
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 34
Hin1II CATG 3 cut(s) 103, 255, 297
HinfI GANTC 1 cut(s) 373
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 261
Hpy188III TCNNGA 2 cut(s) 73, 123
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 5 cut(s) 33, 80, 287, 305, 320
HpyF3I CTNAG 2 cut(s) 111, 148
HpySE526I ACGT 1 cut(s) 257
Hsp92II CATG 3 cut(s) 103, 255, 297
Kzo9I GATC 2 cut(s) 38, 58
LpnPI CCDG 5 cut(s) 11, 184, 300, 315, 315
Lsp1109I GCAGC 1 cut(s) 45
MaeII ACGT 1 cut(s) 257
MalI GATC 2 cut(s) 40, 60
MboI GATC 2 cut(s) 38, 58
MboII GAAGA 1 cut(s) 55
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 3 cut(s) 93, 153, 245
MmeI TCCRAC 2 cut(s) 34, 264
MnlI CCTC 4 cut(s) 54, 160, 206, 343
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 2 cut(s) 256, 292
MspA1I CMGCKG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 35
NcoI CCATGG 1 cut(s) 293
NdeII GATC 2 cut(s) 38, 58
NlaIII CATG 3 cut(s) 103, 255, 297
NlaIV GGNNCC 1 cut(s) 229
NspI RCATGY 1 cut(s) 103
NspV TTCGAA 1 cut(s) 106
PctI GAATGC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 373
PflMI CCANNNNNTGG 2 cut(s) 53, 198
PkrI GCNGC 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 229
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 2 cut(s) 354, 365
RsaNI GTAC 2 cut(s) 353, 364
RseI CAYNNNNRTG 2 cut(s) 256, 292
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 2 cut(s) 38, 58
SduI GDGCHC 1 cut(s) 232
SetI ASST 5 cut(s) 46, 171, 260, 304, 354
SfuI TTCGAA 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 256, 292
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 3 cut(s) 93, 153, 245
SsiI CCGC 1 cut(s) 36
SspI AATATT 1 cut(s) 84
StyI CCWWGG 1 cut(s) 293
TaiI ACGT 1 cut(s) 260
TaqI TCGA 1 cut(s) 106
TasI AATT 3 cut(s) 93, 153, 245
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 33
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 2 cut(s) 53, 198
XapI RAATTY 1 cut(s) 93
XceI RCATGY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.