Prupe.6G002800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013061
Physical Location & Seq
Reverse (-)
323307 .. 325748
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G002800.1

Sequence Viewer

Length: 450 bp
ATGAGGCTTTTGTTTTGCAAGATTCATTGTCCTCCCTTCATTTGCTTTTGTAAACCTTCCCCTCATATATACACTCCTGGACCACTGAAATTAGAGGATATCCCACATCCACCCTTGCCTTCAAAACTTGTGTCAGTTCCTGAAACATCTGATCAGTTATCTGATGACACCAATGAGATCAAGGAGGAGAACTTAGATGGGATTCCAAAACCAGCTGAGCCTTGTCTCAAAAGTAGTCTCAGAAAGCGCATTTCGGACTCCAGTGCTCCAAAACAGGAGCTCAAGAAGAGAGTACAATGGATGGACTTTTTCGGGAAAGAACTTATTGAGATCAGGGAATTTGAATGCAGTTTTTCCTTGGGTGGAACTCTTAGTAGAGAGATTGAATTACATCAGATAACAGCCCCGCAGCAGGATCTGAAAAGAGAAAAGGAAACTTTTATGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.11

Weight (kDa)

6.1

Isoelectric Point (pI)

61.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13480 AT3G13480
fragaria_vesca FvH4_3g45780
malus_domestica MD03G1003200.v1.1 MD11G1003000.v1.1
prunus_persica Prupe.6G002800_v2.0.a1 Prupe.6G002800_v2.0.a1
pyrus_communis pycom03g00320
rosa_chinensis RchiOBHm_Chr5g0083851
rosa_laevigata RLG00000037058
rosa_multiflora Rmu_sc0001287.1_g000041
rosa_roxburghii Rroxscaffold_1G00000740
rosa_rugosa Rorug05G0486600
rosa_samantha Rh5AG539700 Rh5BG564800 Rh5CG586700 Rh5DG573300
rosa_wichuraiana Rw5G050180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 407
AclWI GGATC 1 cut(s) 423
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 3 cut(s) 123, 344, 386
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 215, 280
AluI AGCT 2 cut(s) 215, 280
Alw21I GWGCWC 2 cut(s) 268, 282
Alw26I GTCTC 2 cut(s) 230, 242
AlwI GGATC 1 cut(s) 423
AlwNI CAGNNNCTG 2 cut(s) 140, 418
ApeKI GCWGC 1 cut(s) 409
ApoI RAATTY 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 80
AvaII GGWCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 282
Bbv12I GWGCWC 2 cut(s) 268, 282
BbvI GCAGC 1 cut(s) 421
BccI CCATC 2 cut(s) 191, 295
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 230, 242
BfaI CTAG 1 cut(s) 448
BisI GCNGC 1 cut(s) 410
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 411
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 244
Bpu1102I GCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse1I ACTGG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 2 cut(s) 106, 306
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 207, 253
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 421
BsiHKAI GWGCWC 2 cut(s) 268, 282
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 230, 242
BsmI GAATGC 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 268, 282
Bsp143I GATC 4 cut(s) 151, 177, 330, 415
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 1 cut(s) 407
BspCNI CTCAG 2 cut(s) 208, 252
BspPI GGATC 1 cut(s) 423
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 4 cut(s) 151, 177, 330, 415
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 281
BstDEI CTNAG 4 cut(s) 193, 216, 239, 371
BstF5I GGATG 2 cut(s) 106, 306
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 4 cut(s) 154, 180, 333, 418
BstMAI GTCTC 2 cut(s) 230, 242
BstMBI GATC 4 cut(s) 151, 177, 330, 415
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 421
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BtsCI GGATG 2 cut(s) 106, 306
BtsIMutI CAGTG 2 cut(s) 83, 268
CaiI CAGNNNCTG 2 cut(s) 140, 418
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 293
CviJI RGCY 5 cut(s) 7, 215, 220, 280, 404
CviKI_1 RGCY 5 cut(s) 7, 215, 220, 280, 404
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 4 cut(s) 193, 216, 239, 371
DpnI GATC 4 cut(s) 153, 179, 332, 417
DpnII GATC 4 cut(s) 151, 177, 330, 415
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 282
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 76
EcoRV GATATC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 357
FaiI YATR 4 cut(s) 66, 68, 70, 443
FauI CCCGC 1 cut(s) 414
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 410
FokI GGATG 2 cut(s) 93, 313
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 410
FspBI CTAG 1 cut(s) 448
GlaI GCGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 410
GsuI CTGGAG 1 cut(s) 244
HhaI GCGC 1 cut(s) 249
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HinfI GANTC 3 cut(s) 22, 202, 257
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 6 cut(s) 151, 163, 242, 256, 396, 420
Hpy188III TCNNGA 3 cut(s) 140, 283, 313
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 46, 66, 129
HpyCH4V TGCA 2 cut(s) 18, 348
HpyF3I CTNAG 4 cut(s) 193, 216, 239, 371
HspAI GCGC 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 4 cut(s) 151, 177, 330, 415
LmnI GCTCC 2 cut(s) 271, 277
LpnPI CCDG 8 cut(s) 63, 90, 153, 225, 260, 274, 319, 398
Lsp1109I GCAGC 1 cut(s) 421
MaeI CTAG 1 cut(s) 448
MalI GATC 4 cut(s) 153, 179, 332, 417
MboI GATC 4 cut(s) 151, 177, 330, 415
MboII GAAGA 1 cut(s) 298
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 2 cut(s) 268, 282
MluCI AATT 3 cut(s) 89, 338, 386
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 4 cut(s) 42, 72, 88, 178
MspA1I CMGCKG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 78
NdeII GATC 4 cut(s) 151, 177, 330, 415
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 2 cut(s) 22, 202
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 1 cut(s) 411
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspPI GGNCC 1 cut(s) 80
PstNI CAGNNNCTG 2 cut(s) 140, 418
PsuI RGATCY 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SacI GAGCTC 1 cut(s) 282
SatI GCNGC 1 cut(s) 410
Sau3AI GATC 4 cut(s) 151, 177, 330, 415
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 2 cut(s) 268, 282
SetI ASST 3 cut(s) 58, 217, 282
SinI GGWCC 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 3 cut(s) 89, 338, 386
SsiI CCGC 1 cut(s) 407
SspMI CTAG 1 cut(s) 448
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 357
TasI AATT 3 cut(s) 89, 338, 386
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 2 cut(s) 22, 202
TscAI CASTG 2 cut(s) 90, 268
TseI GCWGC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 14, 28
TspRI CASTG 2 cut(s) 90, 268
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 1 cut(s) 338
XspI CTAG 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.