RLG00000037058

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013061
Physical Location & Seq
Forward (+)
87964288 .. 87966289
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037058

Sequence Viewer

Length: 579 bp
ATGTCCATGGAGCTTCAGCTCCAGCTCCAGTTCATTATAAGAAGGGGAGTCCACCATCATAAGCCTGCAGCCTCATACAGGGGAAATCCAAATTTCTGGATAAACATATTTCTTCACAAGTTTGCAAGAAAAGCAGGCACAATTTTGATGAGGTTTATGTTTTGCAAGATTCATTGTCCTCCCTTTATTTGCTTTTGTAAGCCTTCCCCTCATATATACACTCCTGGACCACTCAAACTAGAGAATACCCCACCTCCAAATCCAAATCCAAATCCAAATCCACATGTTCCTTCTTCAAAACCTGACGCCTCTGATCAGTTACCTAATGACCCCATTGAGATCAAGGAAGAGAGCTCAGCTGAGAATCCAAAACCAGCTGAGAATTCTCTGAAAAGTAATCTCAGAAAGCTGGATTCTTCAGACCCTGCTGCTCCAAAAGACGAGATGAAGAAGAGAGTGCAGTGGATGGACTTTGTAGGGAAGGACCTTGTTGAGATCAGGGAATTTGAATGCAGTGAATTAGATGACACTGACAACGAATACGAGAACAGAAGAGGCTGCGTTTGTGTTATTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.01

Weight (kDa)

7.03

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13480 AT3G13480
fragaria_vesca FvH4_3g45780
malus_domestica MD03G1003200.v1.1 MD11G1003000.v1.1
prunus_persica Prupe.6G002800_v2.0.a1 Prupe.6G002800_v2.0.a1
pyrus_communis pycom03g00320
rosa_chinensis RchiOBHm_Chr5g0083851
rosa_laevigata RLG00000037058
rosa_multiflora Rmu_sc0001287.1_g000041
rosa_roxburghii Rroxscaffold_1G00000740
rosa_rugosa Rorug05G0486600
rosa_samantha Rh5AG539700 Rh5BG564800 Rh5CG586700 Rh5DG573300
rosa_wichuraiana Rw5G050180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AcsI RAATTY 3 cut(s) 91, 382, 503
AcuI CTGAAG 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 78
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 2 cut(s) 297, 509
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 7 cut(s) 13, 19, 25, 354, 359, 377, 409
AluI AGCT 7 cut(s) 13, 19, 25, 354, 359, 377, 409
Alw21I GWGCWC 1 cut(s) 356
AlwNI CAGNNNCTG 1 cut(s) 425
ApeKI GCWGC 3 cut(s) 68, 428, 558
ApoI RAATTY 3 cut(s) 91, 382, 503
AspS9I GGNCC 2 cut(s) 227, 484
AvaII GGWCC 2 cut(s) 227, 484
BanII GRGCYC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 356
BbvI GCAGC 3 cut(s) 80, 415, 545
BccI CCATC 2 cut(s) 63, 460
BciT130I CCWGG 1 cut(s) 225
BclI TGATCA 1 cut(s) 313
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 3 cut(s) 69, 429, 559
BlpI GCTNAGC 1 cut(s) 355
BlsI GCNGC 3 cut(s) 70, 430, 560
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 2 cut(s) 227, 484
BmgT120I GGNCC 2 cut(s) 227, 484
BmrFI CCNGG 1 cut(s) 225
BpmI CTGGAG 2 cut(s) 5, 11
Bpu1102I GCTNAGC 1 cut(s) 355
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMII CTCAG 4 cut(s) 351, 369, 369, 415
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 80, 415, 545
BsgI GTGCAG 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 78
BsmI GAATGC 1 cut(s) 515
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 3 cut(s) 313, 339, 495
Bsp1720I GCTNAGC 1 cut(s) 355
Bsp19I CCATGG 1 cut(s) 6
BspCNI CTCAG 4 cut(s) 352, 368, 370, 414
BspMAI CTGCAG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 3 cut(s) 313, 339, 495
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 225
Bst6I CTCTTC 3 cut(s) 342, 446, 547
BstACI GRCGYC 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 66, 136
BstDEI CTNAG 4 cut(s) 355, 360, 378, 401
BstDSI CCRYGG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 471
BstKTI GATC 3 cut(s) 316, 342, 498
BstMBI GATC 3 cut(s) 313, 339, 495
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 3 cut(s) 80, 415, 545
BstXI CCANNNNNNTGG 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 471
BtsI GCAGTG 2 cut(s) 467, 520
BtsIMutI CAGTG 3 cut(s) 467, 520, 528
Cac8I GCNNGC 2 cut(s) 66, 136
CaiI CAGNNNCTG 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 227, 484
CseI GACGC 1 cut(s) 314
CviAII CATG 2 cut(s) 7, 284
DdeI CTNAG 4 cut(s) 355, 360, 378, 401
DpnI GATC 3 cut(s) 315, 341, 497
DpnII GATC 3 cut(s) 313, 339, 495
Eam1104I CTCTTC 3 cut(s) 342, 446, 547
EarI CTCTTC 3 cut(s) 342, 446, 547
Ecl136II GAGCTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 356
Eco47I GGWCC 2 cut(s) 227, 484
Eco53kI GAGCTC 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 354
EcoNI CCTNNNNNAGG 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 484
EcoRI GAATTC 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 10, 287
FatI CATG 2 cut(s) 6, 283
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 3 cut(s) 69, 429, 559
FokI GGATG 1 cut(s) 478
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 3 cut(s) 69, 429, 559
FspBI CTAG 1 cut(s) 239
GluI GCNGC 3 cut(s) 69, 429, 559
GsuI CTGGAG 2 cut(s) 5, 11
HgaI GACGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 2 cut(s) 10, 287
HinfI GANTC 4 cut(s) 48, 169, 364, 413
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 4 cut(s) 313, 390, 404, 421
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 4 cut(s) 36, 213, 300, 475
HpyCH4V TGCA 5 cut(s) 68, 125, 165, 460, 513
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 4 cut(s) 355, 360, 378, 401
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 2 cut(s) 10, 287
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 313, 339, 495
LmnI GCTCC 4 cut(s) 10, 24, 30, 436
Lsp1109I GCAGC 3 cut(s) 80, 415, 545
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 318
MalI GATC 3 cut(s) 315, 341, 497
MboI GATC 3 cut(s) 313, 339, 495
MboII GAAGA 7 cut(s) 104, 285, 359, 408, 460, 463, 564
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 5 cut(s) 91, 141, 382, 503, 518
MlyI GAGTC 1 cut(s) 57
MnlI CCTC 7 cut(s) 82, 144, 189, 219, 264, 319, 548
MspA1I CMGCKG 2 cut(s) 359, 377
MspR9I CCNGG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 515
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 313, 339, 495
NlaIII CATG 2 cut(s) 10, 287
NspI RCATGY 1 cut(s) 287
PciI ACATGT 1 cut(s) 283
PctI GAATGC 1 cut(s) 515
PfeI GAWTC 3 cut(s) 169, 364, 413
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 3 cut(s) 70, 430, 560
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 484
PscI ACATGT 1 cut(s) 283
PsiI TTATAA 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 356
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspPI GGNCC 2 cut(s) 227, 484
PspPPI RGGWCCY 1 cut(s) 484
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 425
PvuII CAGCTG 2 cut(s) 359, 377
SacI GAGCTC 1 cut(s) 356
SatI GCNGC 3 cut(s) 69, 429, 559
Sau3AI GATC 3 cut(s) 313, 339, 495
Sau96I GGNCC 2 cut(s) 227, 484
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 66
SinI GGWCC 2 cut(s) 227, 484
Sse9I AATT 5 cut(s) 91, 141, 382, 503, 518
SspMI CTAG 1 cut(s) 239
SstI GAGCTC 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 6
TasI AATT 5 cut(s) 91, 141, 382, 503, 518
TfiI GAWTC 3 cut(s) 169, 364, 413
TscAI CASTG 3 cut(s) 467, 520, 535
TseI GCWGC 3 cut(s) 68, 428, 558
TspDTI ATGAA 3 cut(s) 22, 161, 461
TspRI CASTG 3 cut(s) 467, 520, 535
VpaK11BI GGWCC 2 cut(s) 227, 484
XagI CCTNNNNNAGG 1 cut(s) 76
XapI RAATTY 3 cut(s) 91, 382, 503
XceI RCATGY 1 cut(s) 287
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.