Rh5DG573300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013061
Physical Location & Seq
Forward (+)
88060067 .. 88061085
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG573300.1

Sequence Viewer

Length: 411 bp
ATGAGGTTTATGTTTTGCAAGATTCATTGTCCTCCCTTTATTTGCTTTTGTAAGCCTTCCCCTCATATATACACTCCTGGACCACTCAAGCTAGAGAATACCCCACCTCCAAATCCAAATCCAAACCCACATGTTCCTTCTTCAAAACCTGACGCCTCTGATCAGTTACCTAATGACCCCATTGAGATCAAGGAAGAGAGCTTAGCTGAGAATCCAAAACCAGCTGAGAATTCTCTGAAAAGTAATCTCAGAAAGCCAGATTCTTCAGACCCTGCTGCTCCAAAAGACGAGATGAAGAAGAGAGTGCAGTGGATGGACTTTGTAGGGAAGGACCTTGTTGAGATCAGGGAATTTGAATGCAGTGAGATATCTGTTTTAGGGATATCTGCAGCTGCAAGATATCTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

6.3

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13480 AT3G13480
fragaria_vesca FvH4_3g45780
malus_domestica MD03G1003200.v1.1 MD11G1003000.v1.1
prunus_persica Prupe.6G002800_v2.0.a1 Prupe.6G002800_v2.0.a1
pyrus_communis pycom03g00320
rosa_chinensis RchiOBHm_Chr5g0083851
rosa_laevigata RLG00000037058
rosa_multiflora Rmu_sc0001287.1_g000041
rosa_roxburghii Rroxscaffold_1G00000740
rosa_rugosa Rorug05G0486600
rosa_samantha Rh5AG539700 Rh5BG564800 Rh5CG586700 Rh5DG573300
rosa_wichuraiana Rw5G050180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 229, 350
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 153
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 2 cut(s) 144, 356
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 5 cut(s) 91, 201, 206, 224, 392
AluI AGCT 5 cut(s) 91, 201, 206, 224, 392
AlwNI CAGNNNCTG 1 cut(s) 272
ApeKI GCWGC 3 cut(s) 275, 389, 392
ApoI RAATTY 2 cut(s) 229, 350
AspS9I GGNCC 2 cut(s) 80, 331
AvaII GGWCC 2 cut(s) 80, 331
BbvI GCAGC 3 cut(s) 262, 379, 401
BccI CCATC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 160
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 3 cut(s) 276, 390, 393
BlpI GCTNAGC 1 cut(s) 202
BlsI GCNGC 3 cut(s) 277, 391, 394
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 2 cut(s) 80, 331
BmgT120I GGNCC 2 cut(s) 80, 331
BmrFI CCNGG 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
BseBI CCWGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 318
BseMII CTCAG 3 cut(s) 198, 216, 262
BseXI GCAGC 3 cut(s) 262, 379, 401
BsgI GTGCAG 1 cut(s) 326
BsmI GAATGC 1 cut(s) 362
Bsp143I GATC 3 cut(s) 160, 186, 342
Bsp1720I GCTNAGC 1 cut(s) 202
BspCNI CTCAG 3 cut(s) 199, 217, 261
BspMAI CTGCAG 1 cut(s) 391
BssMI GATC 3 cut(s) 160, 186, 342
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 2 cut(s) 189, 293
BstACI GRCGYC 1 cut(s) 153
BstDEI CTNAG 4 cut(s) 202, 207, 225, 248
BstF5I GGATG 1 cut(s) 318
BstKTI GATC 3 cut(s) 163, 189, 345
BstMBI GATC 3 cut(s) 160, 186, 342
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 262, 379, 401
BtsCI GGATG 1 cut(s) 318
BtsI GCAGTG 2 cut(s) 314, 367
BtsIMutI CAGTG 2 cut(s) 314, 367
CaiI CAGNNNCTG 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 80, 331
CseI GACGC 1 cut(s) 161
CviAII CATG 1 cut(s) 131
CviJI RGCY 7 cut(s) 55, 91, 201, 206, 224, 256, 392
CviKI_1 RGCY 7 cut(s) 55, 91, 201, 206, 224, 256, 392
DdeI CTNAG 4 cut(s) 202, 207, 225, 248
DpnI GATC 3 cut(s) 162, 188, 344
DpnII GATC 3 cut(s) 160, 186, 342
Eam1104I CTCTTC 2 cut(s) 189, 293
EarI CTCTTC 2 cut(s) 189, 293
Eco32I GATATC 3 cut(s) 369, 384, 401
Eco47I GGWCC 2 cut(s) 80, 331
Eco57I CTGAAG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 76
EcoRV GATATC 3 cut(s) 369, 384, 401
FaeI CATG 1 cut(s) 134
FaiI YATR 5 cut(s) 11, 66, 68, 70, 132
FatI CATG 1 cut(s) 130
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 276, 390, 393
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 3 cut(s) 276, 390, 393
FspBI CTAG 1 cut(s) 92
GluI GCNGC 3 cut(s) 276, 390, 393
HgaI GACGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 134
HinfI GANTC 3 cut(s) 22, 211, 260
Hpy188I TCNGA 4 cut(s) 160, 237, 251, 268
HpyAV CCTTC 3 cut(s) 66, 147, 322
HpyCH4V TGCA 5 cut(s) 18, 307, 360, 389, 395
HpyF3I CTNAG 4 cut(s) 202, 207, 225, 248
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 3 cut(s) 160, 186, 342
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 7 cut(s) 63, 90, 162, 234, 270, 285, 331
Lsp1109I GCAGC 3 cut(s) 262, 379, 401
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 165
MalI GATC 3 cut(s) 162, 188, 344
MboI GATC 3 cut(s) 160, 186, 342
MboII GAAGA 5 cut(s) 132, 206, 255, 307, 310
MluCI AATT 2 cut(s) 229, 350
MnlI CCTC 4 cut(s) 42, 72, 117, 166
MseI TTAA 1 cut(s) 405
MspA1I CMGCKG 2 cut(s) 224, 392
MspR9I CCNGG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 1 cut(s) 78
NdeII GATC 3 cut(s) 160, 186, 342
NlaIII CATG 1 cut(s) 134
NspI RCATGY 1 cut(s) 134
PciI ACATGT 1 cut(s) 130
PctI GAATGC 1 cut(s) 362
PfeI GAWTC 3 cut(s) 22, 211, 260
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 3 cut(s) 277, 391, 394
PpuMI RGGWCCY 1 cut(s) 331
PscI ACATGT 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspPI GGNCC 2 cut(s) 80, 331
PspPPI RGGWCCY 1 cut(s) 331
PstI CTGCAG 1 cut(s) 391
PstNI CAGNNNCTG 1 cut(s) 272
PvuII CAGCTG 2 cut(s) 224, 392
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 3 cut(s) 276, 390, 393
Sau3AI GATC 3 cut(s) 160, 186, 342
Sau96I GGNCC 2 cut(s) 80, 331
ScrFI CCNGG 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 2 cut(s) 80, 331
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 229, 350
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 76
TasI AATT 2 cut(s) 229, 350
TfiI GAWTC 3 cut(s) 22, 211, 260
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 2 cut(s) 314, 367
TseI GCWGC 3 cut(s) 275, 389, 392
TspDTI ATGAA 2 cut(s) 14, 308
TspRI CASTG 2 cut(s) 314, 367
VpaK11BI GGWCC 2 cut(s) 80, 331
XapI RAATTY 2 cut(s) 229, 350
XceI RCATGY 1 cut(s) 134
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.