Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013061

Physical Location & Seq

Genomic Coordinates Forward (+)

83200339 .. 83204695

Gene Structure 4357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG586700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGGTTTATGTTTTGCAAGATTCATTGTCCTCCCTTTATTTGCTTTTGTAAGCCTTCCTCTCATATATACACTCCTGGACCGCTCAAGCTAGAGAATACCCCACCTCCAAATCCAAATCCAAATCCACATGTTCCTTCTTTAAAACCTGACGCCTCTGATCAGTTACCTAATGACCCCATTGAGATCAAGGAAGAGAGCTTAGCTGAGAATCCAAAACCAGCTGAGAATTCTCTGAAAAGTAATCTCAGAAAGCCGGATTCTTCAGACCCTGCTGCTCCAAAAGACGAGATGAAGAAGAGAGTGCAGTGGATGGACTTTTTAGGGAAGGACCTTGTTGAGATCAGGGAATTTGAATGCAGTGAATTAGATGACACTGACAGCGAATACGAGAACAGAAGAGGCTGCATCTGTGTTATTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.05

Weight (kDa)

5.09

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13480 AT3G13480
fragaria_vesca	FvH4_3g45780
malus_domestica	MD03G1003200.v1.1 MD11G1003000.v1.1
prunus_persica	Prupe.6G002800_v2.0.a1 Prupe.6G002800_v2.0.a1
pyrus_communis	pycom03g00320
rosa_chinensis	RchiOBHm_Chr5g0083851
rosa_laevigata	RLG00000037058
rosa_multiflora	Rmu_sc0001287.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000740
rosa_rugosa	Rorug05G0486600
rosa_samantha	Rh5AG539700 Rh5BG564800 Rh5CG586700 Rh5DG573300
rosa_wichuraiana	Rw5G050180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	85
AciI	CCGC	1 cut(s)	83
AcsI	RAATTY	2 cut(s)	229, 350
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	4 cut(s)	91, 201, 206, 224
AluI	AGCT	4 cut(s)	91, 201, 206, 224
AlwNI	CAGNNNCTG	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	275, 405
ApoI	RAATTY	2 cut(s)	229, 350
AspS9I	GGNCC	2 cut(s)	80, 331
AvaII	GGWCC	2 cut(s)	80, 331
BbvI	GCAGC	2 cut(s)	262, 392
BccI	CCATC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	160
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	276, 406
BlpI	GCTNAGC	1 cut(s)	202
BlsI	GCNGC	2 cut(s)	277, 407
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	2 cut(s)	80, 331
BmgT120I	GGNCC	2 cut(s)	80, 331
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
BseBI	CCWGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	318
BseMII	CTCAG	3 cut(s)	198, 216, 262
BseXI	GCAGC	2 cut(s)	262, 392
BsgI	GTGCAG	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	362
Bsp143I	GATC	3 cut(s)	160, 186, 342
Bsp1720I	GCTNAGC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	83
BspCNI	CTCAG	3 cut(s)	199, 217, 261
BsrBI	CCGCTC	1 cut(s)	85
BssMI	GATC	3 cut(s)	160, 186, 342
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	78
Bst6I	CTCTTC	3 cut(s)	189, 293, 394
BstACI	GRCGYC	1 cut(s)	153
BstDEI	CTNAG	4 cut(s)	202, 207, 225, 248
BstF5I	GGATG	1 cut(s)	318
BstKTI	GATC	3 cut(s)	163, 189, 345
BstMBI	GATC	3 cut(s)	160, 186, 342
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	262, 392
BtsCI	GGATG	1 cut(s)	318
BtsI	GCAGTG	2 cut(s)	314, 367
BtsIMutI	CAGTG	3 cut(s)	314, 367, 375
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	80, 331
CseI	GACGC	1 cut(s)	161
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	7 cut(s)	55, 91, 201, 206, 224, 256, 405
CviKI_1	RGCY	7 cut(s)	55, 91, 201, 206, 224, 256, 405
DdeI	CTNAG	4 cut(s)	202, 207, 225, 248
DpnI	GATC	3 cut(s)	162, 188, 344
DpnII	GATC	3 cut(s)	160, 186, 342
DraI	TTTAAA	1 cut(s)	144
Eam1104I	CTCTTC	3 cut(s)	189, 293, 394
EarI	CTCTTC	3 cut(s)	189, 293, 394
Eco47I	GGWCC	2 cut(s)	80, 331
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	134
FaiI	YATR	6 cut(s)	11, 66, 68, 70, 132, 424
FatI	CATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	276, 406
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	2 cut(s)	276, 406
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	276, 406
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	3 cut(s)	22, 211, 260
HpaII	CCGG	1 cut(s)	257
Hpy188I	TCNGA	4 cut(s)	160, 237, 251, 268
HpyAV	CCTTC	3 cut(s)	66, 147, 322
HpyCH4V	TGCA	4 cut(s)	18, 307, 360, 408
HpyF3I	CTNAG	4 cut(s)	202, 207, 225, 248
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	160, 186, 342
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	7 cut(s)	63, 90, 162, 234, 270, 285, 331
Lsp1109I	GCAGC	2 cut(s)	262, 392
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	3 cut(s)	162, 188, 344
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	3 cut(s)	160, 186, 342
MboII	GAAGA	5 cut(s)	206, 255, 307, 310, 411
MluCI	AATT	3 cut(s)	229, 350, 365
MnlI	CCTC	5 cut(s)	42, 70, 117, 166, 395
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	3 cut(s)	160, 186, 342
NlaIII	CATG	1 cut(s)	134
NspI	RCATGY	1 cut(s)	134
PciI	ACATGT	1 cut(s)	130
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	22, 211, 260
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	277, 407
PpuMI	RGGWCCY	1 cut(s)	331
PscI	ACATGT	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	80, 331
PspPPI	RGGWCCY	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	276, 406
Sau3AI	GATC	3 cut(s)	160, 186, 342
Sau96I	GGNCC	2 cut(s)	80, 331
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	9 cut(s)	8, 93, 109, 151, 172, 203, 208, 226, 336
SfaNI	GCATC	1 cut(s)	417
SinI	GGWCC	2 cut(s)	80, 331
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	229, 350, 365
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	76
TasI	AATT	3 cut(s)	229, 350, 365
TfiI	GAWTC	3 cut(s)	22, 211, 260
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	3 cut(s)	314, 367, 382
TseI	GCWGC	2 cut(s)	275, 405
TspDTI	ATGAA	2 cut(s)	14, 308
TspRI	CASTG	3 cut(s)	314, 367, 382
VpaK11BI	GGWCC	2 cut(s)	80, 331
XapI	RAATTY	2 cut(s)	229, 350
XceI	RCATGY	1 cut(s)	134
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.