Prupe.6G075800_v2.0.a1

XH domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
5207000 .. 5212637
5638 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G075800.1

Sequence Viewer

Length: 2058 bp
ATGTCTCACAGATCAAAAGAAGAAAAGGGGTATAGCCGGTCTGAATTAGAAGACTATGTGGACGAGTATTACTATCAGTTAAAGAAAGGTAGTATTAAGGTTAAAAATTCTGATTCAACTTATAGATGCCCATTTTGCGACGGGAAGAGGAGGCATGATTACCGACTAAAGGAGCTTTCACAACATGCTTATGACATTGGCAGAGACAGCAAGGGTTTAAAAGAGAAATCAAAGCACTTGGCTTTGGAGAGGTATATAGACAGATATCTTTATGTGAAGAGTCGGTTAGAATCTGCACCCAAGATTGAAAGCCCTAAACACTCGCAGAGACGGACTCAGGTGGTGGCTGTAGTGGGCTCCTCCCAAATCAGAGAAAAGTCTATTCATTCTGAACCTCGAGCCCACTCCCAGCTTCTTCCCAGCTTCTTCTCGGCCCCCACTCTCCCCACTCCAAAGGCACAACCCACAACAGGTTCTAAGGCTGGTTCCACCCTTGCTACACAGGAGGATGACCAATGGTTTGTATGGCCTCCAATGGGCATTTTGGCAAATGTTAAAACTGAACTAAAGGATGGAAGACATGTTGGGGAAAGTGGTTCCAAACTTAAAACTGACTTGGCAAGTAAAGGTTTTAACCCTTTGAGGGTTCATCCTTTATGGACATACAGGGGTCACTCCGGGTTTGCAATTGTTGAATTTGAGAAAAGCTGGGAAGGTTTCCATAATGCAAAGTCGTTTGACAAGAGTTTTGAAGTTGATCACCTTGGAAAAGGGGACTATAATGTAATGAGGAATCGAGGAGATAACTTGTATGGATGGGTTGCTCGGGATGATGATTACAATTTGAGAAGCACTGTGGGTGATTATCTTCGTAAGAATGGAGATTTGAAAACTGTTTCTGCTCAACAACAAGAAGAACATACGAAAAATTCAAAGCTAGTTACCACTCTAACTAGCACCTTAGTTATAAAGAATTCACATCTAAAGGAGATGGAAAGAAAATGTCGTACCACTGACGATGCTTTAAACAAGGTGGAGGCTGAAAAGGAGGATATTCTCAAAGCTTGCAATGAAAAAAGAGAAAAAATGCAAAAAATTGCTCATGACCAATTGGCAAAGATATGCTTAGACCACAAGAAAACCGCTTTGGAGTTGGAAGCTACAAAAAAAGAGCTTGAGGACCGTGAGAAACAACTGCAACAACGCCGTGCACAAAATGATAGTGAGAGAAGGAAAATCTATCATGAAAGGAAAATGAATGAGATGGCTACCTTGGAGCAAAAGAAGGCTGACGAAAAGATGTTACAGTTAGCAGAAGAACAAAAGAGAGAAAAGGAGAAACTTCACAAGAGAATCATTGAGTTGGAAAAGCAGCTTGATGCCAAACAGGTACTGGAGCTTGAGATAGAGCGAATGAGAGGTGCTTTAAAGGTGATGAACCACATGGATGAGGATGAGGATTTGGAAGCCAGGAAAAAGATGACTGAAATTAAAGAGAAGTTACAGGAGAAGGAGGAGGAGTATACCGATGTAGAGGAACTTTATAAAACACTTATTGTTATGGAGCGGAGGAATAATGATGAAGTGCAGGAGGCTCGTAAGGAAGTAATCAAAGAACTGCGGGGTTCAAGCAGCCGTGCTTCCATTGGCGTGAAGATAATGGGAGATCTTGATGAAAAACCATTCCAAACTGCAACCAAGAAGAAATATTCTGAAGAAGAAGCAGATGTGAAGGCAGTGGAGTTATGTTCTCTGTGGCAGGAGCATCTTAGGGATCCAAGTTGGTATCCTTTCAGGATTATCACAGATAAAGAAGGAAAGACCAAGGAAATTATTAATGAAGAAGATGACAAATTGAAGGCCTTAAAAAATGAGCTGGGTGATGAAGTATATGAGAAGGTGACAACTGCTATGAAGGAATTGAATGAGTATAATGCCAGTGGTCGGTATACAATACCTGAGCTGTGGAACTTCAAAGAAGGGAGGAAGGCATCGTTGGAAGAGGGAGTAGTGTTTTTGCTAAACAAGTGGAAGCTGCTTAGAAAACGTAAAAGATAA

Protein Analysis

686

Amino Acids

80.08

Weight (kDa)

8.75

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 968, 1545
AccBSI CCGCTC 1 cut(s) 1567
AccI GTMKAC 2 cut(s) 1523, 1949
AciI CCGC 3 cut(s) 1143, 1567, 1621
AclWI GGATC 2 cut(s) 1769, 1782
AcsI RAATTY 4 cut(s) 106, 695, 928, 973
AcuI CTGAAG 1 cut(s) 1734
AfaI GTAC 2 cut(s) 1009, 1392
AfiI CCNNNNNNNGG 5 cut(s) 169, 470, 536, 643, 1944
AflIII ACRYGT 1 cut(s) 580
AjnI CCWGG 1 cut(s) 1469
AjuI GAANNNNNNNTTGG 4 cut(s) 1130, 1162, 1979, 2011
Alw21I GWGCWC 1 cut(s) 1213
Alw26I GTCTC 3 cut(s) 9, 198, 322
Alw44I GTGCAC 1 cut(s) 1209
AlwI GGATC 2 cut(s) 1769, 1782
AlwNI CAGNNNCTG 1 cut(s) 1393
Ama87I CYCGRG 2 cut(s) 396, 825
AoxI GGCC 3 cut(s) 432, 527, 1860
ApaLI GTGCAC 1 cut(s) 1209
ApeKI GCWGC 3 cut(s) 1372, 1632, 2035
ApoI RAATTY 4 cut(s) 106, 695, 928, 973
ArsI GACNNNNNNTTYG 4 cut(s) 503, 535, 731, 763
AseI ATTAAT 1 cut(s) 1836
AspS9I GGNCC 2 cut(s) 433, 1180
AsuC2I CCSGG 1 cut(s) 679
AsuHPI GGTGA 5 cut(s) 752, 872, 1444, 1892, 1912
AvaI CYCGRG 2 cut(s) 396, 825
AvaII GGWCC 1 cut(s) 1180
BaeGI GKGCMC 1 cut(s) 1213
BamHI GGATCC 1 cut(s) 1774
BanII GRGCYC 2 cut(s) 359, 403
BbsI GAAGAC 2 cut(s) 57, 583
Bbv12I GWGCWC 1 cut(s) 1213
BbvI GCAGC 3 cut(s) 1384, 1644, 2022
BccI CCATC 4 cut(s) 566, 810, 985, 1258
BceAI ACGGC 2 cut(s) 1191, 1620
BcgI CGANNNNNNTGC 2 cut(s) 1577, 1611
BciT130I CCWGG 1 cut(s) 1471
BciVI GTATCC 1 cut(s) 1797
BclI TGATCA 1 cut(s) 757
BcnI CCSGG 1 cut(s) 679
BcoDI GTCTC 3 cut(s) 9, 198, 322
BfaI CTAG 2 cut(s) 938, 954
BfmI CTRYAG 1 cut(s) 348
BfuI GTATCC 1 cut(s) 1797
BglII AGATCT 1 cut(s) 1666
BisI GCNGC 3 cut(s) 1373, 1633, 2036
BlsI GCNGC 3 cut(s) 1374, 1634, 2037
Bme1390I CCNGG 2 cut(s) 679, 1471
Bme18I GGWCC 1 cut(s) 1180
BmeT110I CYCGRG 2 cut(s) 396, 825
BmgT120I GGNCC 2 cut(s) 433, 1180
BmiI GGNNCC 5 cut(s) 358, 435, 487, 598, 1776
BmrFI CCNGG 2 cut(s) 679, 1471
BmsI GCATC 5 cut(s) 116, 1009, 1369, 1774, 2000
BpiI GAAGAC 2 cut(s) 57, 583
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpmI CTGGAG 1 cut(s) 1415
Bpu10I CCTNAGC 1 cut(s) 1959
BpuEI CTTGAG 2 cut(s) 1196, 1421
BpuMI CCSGG 1 cut(s) 679
BsaJI CCNNGG 3 cut(s) 763, 1272, 1824
BsaXI ACNNNNNCTCC 2 cut(s) 1505, 1535
Bsc4I CCNNNNNNNGG 5 cut(s) 169, 470, 536, 643, 1944
Bse118I RCCGGY 1 cut(s) 36
Bse1I ACTGG 2 cut(s) 1398, 1938
Bse3DI GCAATG 1 cut(s) 1075
BseBI CCWGG 1 cut(s) 1471
BseDI CCNNGG 3 cut(s) 763, 1272, 1824
BseGI GGATG 7 cut(s) 514, 577, 649, 821, 835, 1453, 1459
BseLI CCNNNNNNNGG 5 cut(s) 169, 470, 536, 643, 1944
BseMI GCAATG 1 cut(s) 1075
BseMII CTCAG 2 cut(s) 350, 1950
BseNI ACTGG 2 cut(s) 1398, 1938
BseRI GAGGAG 5 cut(s) 163, 349, 813, 1529, 1532
BseSI GKGCMC 1 cut(s) 1213
BseXI GCAGC 3 cut(s) 1384, 1644, 2022
BseYI CCCAGC 4 cut(s) 408, 419, 708, 1876
BsgI GTGCAG 2 cut(s) 279, 1607
BshFI GGCC 3 cut(s) 434, 529, 1862
BsiHKAI GWGCWC 1 cut(s) 1213
BsiHKCI CYCGRG 2 cut(s) 396, 825
BsiSI CCGG 2 cut(s) 37, 678
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 5 cut(s) 169, 470, 536, 643, 1944
BsmAI GTCTC 3 cut(s) 9, 198, 322
BsmBI CGTCTC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 3 cut(s) 434, 529, 1862
BsoBI CYCGRG 2 cut(s) 396, 825
Bsp1286I GDGCHC 3 cut(s) 359, 403, 1213
Bsp143I GATC 4 cut(s) 11, 757, 1666, 1774
BspACI CCGC 3 cut(s) 1143, 1567, 1621
BspANI GGCC 3 cut(s) 434, 529, 1862
BspCNI CTCAG 2 cut(s) 349, 1951
BspHI TCATGA 2 cut(s) 1102, 1243
BspLI GGNNCC 5 cut(s) 358, 435, 487, 598, 1776
BspPI GGATC 2 cut(s) 1769, 1782
BsrBI CCGCTC 1 cut(s) 1567
BsrDI GCAATG 1 cut(s) 1075
BsrFI RCCGGY 1 cut(s) 36
BsrI ACTGG 2 cut(s) 1398, 1938
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 3 cut(s) 763, 1272, 1824
BssMI GATC 4 cut(s) 11, 757, 1666, 1774
BssNAI GTATAC 2 cut(s) 1524, 1950
BssT1I CCWWGG 3 cut(s) 763, 1272, 1824
Bst1107I GTATAC 2 cut(s) 1524, 1950
Bst2UI CCWGG 1 cut(s) 1471
Bst4CI ACNGT 4 cut(s) 856, 895, 1184, 1308
Bst6I CTCTTC 3 cut(s) 140, 272, 1995
BstC8I GCNNGC 1 cut(s) 1066
BstDEI CTNAG 7 cut(s) 336, 477, 961, 1126, 1769, 1959, 2039
BstF5I GGATG 7 cut(s) 514, 577, 649, 821, 835, 1453, 1459
BstKTI GATC 4 cut(s) 14, 760, 1669, 1777
BstMAI GTCTC 3 cut(s) 9, 198, 322
BstMBI GATC 4 cut(s) 11, 757, 1666, 1774
BstMWI GCNNNNNNNGC 2 cut(s) 135, 207
BstNI CCWGG 1 cut(s) 1471
BstNSI RCATGY 2 cut(s) 188, 584
BstSCI CCNGG 2 cut(s) 677, 1469
BstSFI CTRYAG 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 1213
BstV1I GCAGC 3 cut(s) 1384, 1644, 2022
BstV2I GAAGAC 2 cut(s) 57, 583
BstX2I RGATCY 2 cut(s) 1666, 1774
BstYI RGATCY 2 cut(s) 1666, 1774
BstZ17I GTATAC 2 cut(s) 1524, 1950
BsuI GTATCC 1 cut(s) 1797
BsuRI GGCC 3 cut(s) 434, 529, 1862
BtsCI GGATG 7 cut(s) 514, 577, 649, 821, 835, 1453, 1459
BtsI GCAGTG 1 cut(s) 1743
BtsIMutI CAGTG 4 cut(s) 852, 1011, 1743, 1945
Cac8I GCNNGC 1 cut(s) 1066
CaiI CAGNNNCTG 1 cut(s) 1393
CciI TCATGA 2 cut(s) 1102, 1243
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 433, 1180
Csp6I GTAC 2 cut(s) 1008, 1391
CviAII CATG 6 cut(s) 155, 185, 581, 1103, 1244, 1444
CviQI GTAC 2 cut(s) 1008, 1391
DdeI CTNAG 7 cut(s) 336, 477, 961, 1126, 1769, 1959, 2039
DpnI GATC 4 cut(s) 13, 759, 1668, 1776
DpnII GATC 4 cut(s) 11, 757, 1666, 1774
DraI TTTAAA 3 cut(s) 219, 1026, 1428
Eam1104I CTCTTC 3 cut(s) 140, 272, 1995
EarI CTCTTC 3 cut(s) 140, 272, 1995
Eco130I CCWWGG 3 cut(s) 763, 1272, 1824
Eco147I AGGCCT 1 cut(s) 1862
Eco24I GRGCYC 2 cut(s) 359, 403
Eco32I GATATC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 1180
Eco57I CTGAAG 1 cut(s) 1734
Eco88I CYCGRG 2 cut(s) 396, 825
EcoRI GAATTC 1 cut(s) 973
EcoRII CCWGG 1 cut(s) 1469
EcoRV GATATC 1 cut(s) 266
EcoT14I CCWWGG 3 cut(s) 763, 1272, 1824
EcoT38I GRGCYC 2 cut(s) 359, 403
ErhI CCWWGG 3 cut(s) 763, 1272, 1824
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 6 cut(s) 158, 188, 584, 1106, 1247, 1447
FalI AAGNNNNNCTT 2 cut(s) 1109, 1141
FaqI GGGAC 1 cut(s) 788
FatI CATG 6 cut(s) 154, 184, 580, 1102, 1243, 1443
FauI CCCGC 1 cut(s) 1614
FbaI TGATCA 1 cut(s) 757
FblI GTMKAC 2 cut(s) 1523, 1949
Fnu4HI GCNGC 3 cut(s) 1373, 1633, 2036
FokI GGATG 7 cut(s) 521, 584, 636, 828, 842, 1460, 1466
FriOI GRGCYC 2 cut(s) 359, 403
Fsp4HI GCNGC 3 cut(s) 1373, 1633, 2036
FspBI CTAG 2 cut(s) 938, 954
GluI GCNGC 3 cut(s) 1373, 1633, 2036
GsaI CCCAGC 4 cut(s) 412, 423, 712, 1880
GsuI CTGGAG 1 cut(s) 1415
HaeIII GGCC 3 cut(s) 434, 529, 1862
HapII CCGG 2 cut(s) 37, 678
Hin1II CATG 6 cut(s) 158, 188, 584, 1106, 1247, 1447
HindIII AAGCTT 1 cut(s) 1062
HinfI GANTC 6 cut(s) 113, 280, 290, 334, 793, 1353
HpaII CCGG 2 cut(s) 37, 678
HphI GGTGA 5 cut(s) 752, 872, 1444, 1892, 1912
Hpy166II GTNNAC 4 cut(s) 61, 1211, 1524, 1950
Hpy188I TCNGA 5 cut(s) 43, 112, 371, 391, 1714
Hpy188III TCNNGA 5 cut(s) 827, 1103, 1244, 1670, 1795
Hpy8I GTNNAC 4 cut(s) 61, 1211, 1524, 1950
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 4 cut(s) 856, 895, 1184, 1308
HpyCH4IV ACGT 1 cut(s) 2047
HpyCH4V TGCA 9 cut(s) 296, 686, 728, 1068, 1090, 1198, 1211, 1588, 1694
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 207
HpyF3I CTNAG 7 cut(s) 336, 477, 961, 1126, 1769, 1959, 2039
HpySE526I ACGT 1 cut(s) 2047
Hsp92II CATG 6 cut(s) 158, 188, 584, 1106, 1247, 1447
Ksp22I TGATCA 1 cut(s) 757
Kzo9I GATC 4 cut(s) 11, 757, 1666, 1774
LmnI GCTCC 6 cut(s) 172, 362, 1276, 1396, 1564, 1762
Lsp1109I GCAGC 3 cut(s) 1384, 1644, 2022
LweI GCATC 5 cut(s) 116, 1009, 1369, 1774, 2000
MaeI CTAG 2 cut(s) 938, 954
MaeII ACGT 1 cut(s) 2047
MaeIII GTNAC 5 cut(s) 671, 940, 1302, 1500, 1900
MalI GATC 4 cut(s) 13, 759, 1668, 1776
MbiI CCGCTC 1 cut(s) 1567
MboI GATC 4 cut(s) 11, 757, 1666, 1774
MfeI CAATTG 2 cut(s) 687, 1109
MflI RGATCY 2 cut(s) 1666, 1774
MhlI GDGCHC 3 cut(s) 359, 403, 1213
MlyI GAGTC 2 cut(s) 289, 328
MmeI TCCRAC 3 cut(s) 1134, 1344, 1977
MslI CAYNNNNRTG 3 cut(s) 189, 1446, 1649
MspI CCGG 2 cut(s) 37, 678
MspR9I CCNGG 2 cut(s) 679, 1471
MunI CAATTG 2 cut(s) 687, 1109
MvaI CCWGG 1 cut(s) 1471
MwoI GCNNNNNNNGC 2 cut(s) 135, 207
NciI CCSGG 1 cut(s) 679
NdeII GATC 4 cut(s) 11, 757, 1666, 1774
NlaIII CATG 6 cut(s) 158, 188, 584, 1106, 1247, 1447
NlaIV GGNNCC 5 cut(s) 358, 435, 487, 598, 1776
NmeAIII GCCGAG 1 cut(s) 410
NmuCI GTSAC 2 cut(s) 671, 1900
NspI RCATGY 2 cut(s) 188, 584
PaeR7I CTCGAG 1 cut(s) 396
PagI TCATGA 2 cut(s) 1102, 1243
PceI AGGCCT 1 cut(s) 1862
PciI ACATGT 1 cut(s) 580
PfeI GAWTC 4 cut(s) 113, 290, 793, 1353
PkrI GCNGC 3 cut(s) 1374, 1634, 2037
PleI GAGTC 2 cut(s) 288, 328
PpsI GAGTC 2 cut(s) 288, 328
PscI ACATGT 1 cut(s) 580
PshBI ATTAAT 1 cut(s) 1836
PsiI TTATAA 2 cut(s) 968, 1545
Psp6I CCWGG 1 cut(s) 1469
PspFI CCCAGC 4 cut(s) 408, 419, 708, 1876
PspGI CCWGG 1 cut(s) 1469
PspN4I GGNNCC 5 cut(s) 358, 435, 487, 598, 1776
PspPI GGNCC 2 cut(s) 433, 1180
PspXI VCTCGAGB 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 1393
PsuI RGATCY 2 cut(s) 1666, 1774
RsaI GTAC 2 cut(s) 1009, 1392
RsaNI GTAC 2 cut(s) 1008, 1391
RseI CAYNNNNRTG 3 cut(s) 189, 1446, 1649
SatI GCNGC 3 cut(s) 1373, 1633, 2036
Sau3AI GATC 4 cut(s) 11, 757, 1666, 1774
Sau96I GGNCC 2 cut(s) 433, 1180
SchI GAGTC 2 cut(s) 289, 328
ScrFI CCNGG 2 cut(s) 679, 1471
SduI GDGCHC 3 cut(s) 359, 403, 1213
SfaNI GCATC 5 cut(s) 116, 1009, 1369, 1774, 2000
SfcI CTRYAG 1 cut(s) 348
Sfr274I CTCGAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 1180
SlaI CTCGAG 1 cut(s) 396
SmiMI CAYNNNNRTG 3 cut(s) 189, 1446, 1649
SmlI CTYRAG 3 cut(s) 396, 1175, 1400
SmoI CTYRAG 3 cut(s) 396, 1175, 1400
SseBI AGGCCT 1 cut(s) 1862
SsiI CCGC 3 cut(s) 1143, 1567, 1621
SspI AATATT 1 cut(s) 1709
SspMI CTAG 2 cut(s) 938, 954
StuI AGGCCT 1 cut(s) 1862
StyD4I CCNGG 2 cut(s) 677, 1469
StyI CCWWGG 3 cut(s) 763, 1272, 1824
TaaI ACNGT 4 cut(s) 856, 895, 1184, 1308
TaiI ACGT 1 cut(s) 2050
TaqI TCGA 2 cut(s) 397, 796
TfiI GAWTC 4 cut(s) 113, 290, 793, 1353
TscAI CASTG 4 cut(s) 859, 1018, 1743, 1945
TseFI GTSAC 2 cut(s) 671, 1900
TseI GCWGC 3 cut(s) 1372, 1632, 2035
Tsp45I GTSAC 2 cut(s) 671, 1900
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 4 cut(s) 859, 1018, 1743, 1945
VneI GTGCAC 1 cut(s) 1209
VpaK11BI GGWCC 1 cut(s) 1180
VspI ATTAAT 1 cut(s) 1836
XapI RAATTY 4 cut(s) 106, 695, 928, 973
XceI RCATGY 2 cut(s) 188, 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 1390
XhoI CTCGAG 1 cut(s) 396
XmiI GTMKAC 2 cut(s) 1523, 1949
XspI CTAG 2 cut(s) 938, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.