Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029223.1

Orthogroup ID

OG0008274

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3339

Gene Structure 3339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029223.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1723 bp

gtttgatatgtctcacagatcaaaggaagaaaaggataagtggtctgatttcaagtactatgaggacaagtattataatgagttaaagaaaggtagttataaaataaaaaattctgattcaacttacagatgtccgttttgccatgagaaaaggaggcaaaattaccaacttagggagctttcacgacatgcttcttctatcggcagaggctcacatagcaggggtataaaagatgaagccaagcactgggctttgaagagttatatagataaatatgttgctgtgaagagtccgttagaatctgcagacaagatagaacggcctagagaacttgcacccaaggtaggaggacctgaacaatctgcagtcaagctagaagggcctagagatcctgctcccaagagagaacgggaacctgcacccatcagagaacttcctatagagcctgcaccaaagagagaacgcaatttagagcctgcaccacagacagaatcccctagactgaatgatgataaattgtttgtatggcctgtgatgggcgttttggcaaacattaaaactgagttcaaaggtgggaaacatgttggcgaaagtggttctaaaatgaaagctgagttgacagcaaaaggttttaaccctgtgagggttcatccgttatggaattttcggggtcactctggttttgcaattgttgaatttgagaataactgggaaggtttcaacaatggaatgtcctttgagaaaagttttgaagttgagcgccatggaaaaagggactataatctgatgaggaataaaggtgatcaattatatggatgggttgctcgggatgatgattacaattcaagaagcattgtaagtgattatctttgcaagaatggagatttgaaaactgtttctggtcagcaagctgaggaacagagaaaaactacaaagcttgtatccaatcttaaaaacaccttggagataaagaattcacatcttgaggagatgcaaaacaaatatcataagactgctaattccttaaacaaggtagtgcttgaaagggatgcgatacttaaagcgttcaatgacgaaagagagaaaagggaacaaatggaaaaagaacagctcagcagaatattaagggaccatgagaaagccgcagagcagttggaaaatcaaaaaaaagagcttgcgcgccgtgagaagcaactgcaacaacgcagagcacaaaatgatagcgagaggaggaaactccatcatgataggcaaatgaatgcaagggctacactggaacagaaaaaagctgatgaaaatatgttacggttggctgaagaacaaaagaaacaaaaggaggaacttcgtaaaaaagtcattcaattggaaaaggagctggaaaaaaaacaagcactggagctggagatagagcagatgagaggtgctataaagacgatgaaacacatggatgaggatgaggacatggatgccaagaagaagattgatgagatcgaacaaaacttggaggagaaggagcaggagtatgatgctgtagaagcacttcatcaagcgcttgtggtcaaggagcggagaaataatgatgaagtgcaggaggctcgcaaggagctagtcaatgtatggacgtttgacctctctcgtttgactgttgcttggttcattgaatctacactatttcttggttcattgaattatacatctccatactattttatacagaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

573

Amino Acids

67.47

Weight (kDa)

8.8

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13790 AT1G13790
fragaria_vesca	FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250
malus_domestica	MD00G1012600.v1.1
prunus_persica	Prupe.6G075800_v2.0.a1
pyrus_communis	pycom11g08830
rosa_chinensis	RchiOBHm_Chr5g0065061
rosa_laevigata	RLG00000035749
rosa_multiflora	Rmu_sc0029223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016260
rosa_rugosa	Rorug05G0367300 Rorug05G0367400
rosa_samantha	Rh5AG426000 Rh5BG441100 Rh5CG463700 Rh5DG453800
rosa_wichuraiana	Rw5G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	76, 100
Acc36I	ACCTGC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	1568
AccII	CGCG	1 cut(s)	1181
AciI	CCGC	2 cut(s)	1144, 1568
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	4 cut(s)	110, 662, 696, 974
AcuI	CTGAAG	1 cut(s)	1336
AfaI	GTAC	1 cut(s)	57
AfeI	AGCGCT	1 cut(s)	1552
AfiI	CCNNNNNNNGG	5 cut(s)	173, 247, 345, 537, 644
AflIII	ACRYGT	1 cut(s)	581
Alw21I	GWGCWC	1 cut(s)	1214
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	384
Ama87I	CYCGRG	1 cut(s)	826
Aor51HI	AGCGCT	1 cut(s)	1552
AoxI	GGCC	3 cut(s)	321, 381, 528
ApoI	RAATTY	4 cut(s)	110, 662, 696, 974
Asp700I	GAANNNNTTC	1 cut(s)	1540
AspLEI	GCGC	4 cut(s)	763, 1181, 1183, 1553
AspS9I	GGNCC	3 cut(s)	351, 381, 1130
AsuHPI	GGTGA	1 cut(s)	813
AvaI	CYCGRG	1 cut(s)	826
AvaII	GGWCC	2 cut(s)	351, 1130
BarI	GAAGNNNNNNTAC	2 cut(s)	1525, 1557
Bbv12I	GWGCWC	1 cut(s)	1214
BbvCI	CCTCAGC	1 cut(s)	913
BccI	CCATC	4 cut(s)	432, 530, 811, 1249
BceAI	ACGGC	2 cut(s)	336, 1168
BcgI	CGANNNNNNTGC	2 cut(s)	1578, 1612
BciVI	GTATCC	1 cut(s)	953
BclI	TGATCA	1 cut(s)	803
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	5 cut(s)	325, 375, 385, 499, 1608
BfmI	CTRYAG	4 cut(s)	304, 364, 439, 1531
BfoI	RGCGCY	2 cut(s)	764, 1554
BfuAI	ACCTGC	1 cut(s)	425
BfuI	GTATCC	1 cut(s)	953
BisI	GCNGC	1 cut(s)	1144
BlpI	GCTNAGC	1 cut(s)	1113
BlsI	GCNGC	1 cut(s)	1145
BmcAI	AGTACT	1 cut(s)	57
Bme18I	GGWCC	2 cut(s)	351, 1130
BmeT110I	CYCGRG	1 cut(s)	826
BmgT120I	GGNCC	3 cut(s)	351, 381, 1130
BmiI	GGNNCC	2 cut(s)	415, 1131
BmrI	ACTGGG	2 cut(s)	257, 719
BmsI	GCATC	4 cut(s)	982, 1040, 1457, 1517
BmuI	ACTGGG	2 cut(s)	257, 719
BpmI	CTGGAG	2 cut(s)	1416, 1422
Bpu10I	CCTNAGC	1 cut(s)	913
Bpu1102I	GCTNAGC	1 cut(s)	1113
BpuEI	CTTGAG	1 cut(s)	1005
BsaJI	CCNNGG	3 cut(s)	340, 764, 961
BsaXI	ACNNNNNCTCC	2 cut(s)	1506, 1536
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 247, 345, 537, 644
Bse1I	ACTGG	4 cut(s)	252, 714, 1279, 1399
BseDI	CCNNGG	3 cut(s)	340, 764, 961
BseGI	GGATG	7 cut(s)	650, 822, 836, 1055, 1454, 1460, 1472
BseLI	CCNNNNNNNGG	5 cut(s)	173, 247, 345, 537, 644
BseMII	CTCAG	4 cut(s)	553, 604, 904, 1127
BseNI	ACTGG	4 cut(s)	252, 714, 1279, 1399
BsePI	GCGCGC	1 cut(s)	1179
BseRI	GAGGAG	3 cut(s)	1002, 1244, 1521
BsgI	GTGCAG	4 cut(s)	403, 433, 463, 1608
Bsh1236I	CGCG	1 cut(s)	1181
BshFI	GGCC	3 cut(s)	323, 383, 530
BsiHKAI	GWGCWC	1 cut(s)	1214
BsiHKCI	CYCGRG	1 cut(s)	826
BslFI	GGGAC	2 cut(s)	789, 1143
BslI	CCNNNNNNNGG	5 cut(s)	173, 247, 345, 537, 644
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	789, 1143
BsmI	GAATGC	1 cut(s)	1265
BsnI	GGCC	3 cut(s)	323, 383, 530
BsoBI	CYCGRG	1 cut(s)	826
Bsp1286I	GDGCHC	1 cut(s)	1214
Bsp143I	GATC	4 cut(s)	18, 389, 803, 1489
Bsp1720I	GCTNAGC	1 cut(s)	1113
Bsp19I	CCATGG	1 cut(s)	764
BspACI	CCGC	2 cut(s)	1144, 1568
BspANI	GGCC	3 cut(s)	323, 383, 530
BspCNI	CTCAG	4 cut(s)	554, 605, 905, 1126
BspFNI	CGCG	1 cut(s)	1181
BspHI	TCATGA	1 cut(s)	1244
BspLI	GGNNCC	2 cut(s)	415, 1131
BspMAI	CTGCAG	2 cut(s)	308, 368
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	1568
BsrI	ACTGG	4 cut(s)	252, 714, 1279, 1399
BssECI	CCNNGG	3 cut(s)	340, 764, 961
BssHII	GCGCGC	1 cut(s)	1179
BssMI	GATC	4 cut(s)	18, 389, 803, 1489
BssT1I	CCWWGG	3 cut(s)	340, 764, 961
Bst4CI	ACNGT	3 cut(s)	896, 1309, 1646
Bst6I	CTCTTC	2 cut(s)	252, 282
BstC8I	GCNNGC	6 cut(s)	448, 478, 910, 1177, 1181, 1598
BstDEI	CTNAG	5 cut(s)	171, 562, 613, 913, 1113
BstDSI	CCRYGG	1 cut(s)	764
BstF5I	GGATG	7 cut(s)	650, 822, 836, 1055, 1454, 1460, 1472
BstFNI	CGCG	1 cut(s)	1181
BstH2I	RGCGCY	2 cut(s)	764, 1554
BstHHI	GCGC	4 cut(s)	763, 1181, 1183, 1553
BstKTI	GATC	4 cut(s)	21, 392, 806, 1492
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	4 cut(s)	18, 389, 803, 1489
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 380, 1536
BstNSI	RCATGY	2 cut(s)	192, 585
BstSFI	CTRYAG	4 cut(s)	304, 364, 439, 1531
BstUI	CGCG	1 cut(s)	1181
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	953
BsuRI	GGCC	3 cut(s)	323, 383, 530
BtgI	CCRYGG	1 cut(s)	764
BtsCI	GGATG	7 cut(s)	650, 822, 836, 1055, 1454, 1460, 1472
BtsIMutI	CAGTG	3 cut(s)	245, 1272, 1392
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	6 cut(s)	448, 478, 910, 1177, 1181, 1598
CciI	TCATGA	1 cut(s)	1244
CfoI	GCGC	4 cut(s)	763, 1181, 1183, 1553
Cfr13I	GGNCC	3 cut(s)	351, 381, 1130
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	8 cut(s)	144, 189, 582, 765, 1134, 1245, 1445, 1463
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	5 cut(s)	171, 562, 613, 913, 1113
DpnI	GATC	4 cut(s)	20, 391, 805, 1491
DpnII	GATC	4 cut(s)	18, 389, 803, 1489
Eam1104I	CTCTTC	2 cut(s)	252, 282
EarI	CTCTTC	2 cut(s)	252, 282
Eco130I	CCWWGG	3 cut(s)	340, 764, 961
Eco47I	GGWCC	2 cut(s)	351, 1130
Eco47III	AGCGCT	1 cut(s)	1552
Eco57I	CTGAAG	1 cut(s)	1336
Eco88I	CYCGRG	1 cut(s)	826
EcoO109I	RGGNCCY	2 cut(s)	351, 381
EcoRI	GAATTC	1 cut(s)	974
EcoT14I	CCWWGG	3 cut(s)	340, 764, 961
ErhI	CCWWGG	3 cut(s)	340, 764, 961
FaeI	CATG	8 cut(s)	147, 192, 585, 768, 1137, 1248, 1448, 1466
FaqI	GGGAC	2 cut(s)	789, 1143
FatI	CATG	8 cut(s)	143, 188, 581, 764, 1133, 1244, 1444, 1462
FbaI	TGATCA	1 cut(s)	803
Fnu4HI	GCNGC	1 cut(s)	1144
FokI	GGATG	7 cut(s)	637, 829, 843, 1062, 1461, 1467, 1479
Fsp4HI	GCNGC	1 cut(s)	1144
FspBI	CTAG	5 cut(s)	325, 375, 385, 499, 1608
GlaI	GCGC	4 cut(s)	762, 1180, 1182, 1552
GluI	GCNGC	1 cut(s)	1144
GsuI	CTGGAG	2 cut(s)	1416, 1422
HaeII	RGCGCY	2 cut(s)	764, 1554
HaeIII	GGCC	3 cut(s)	323, 383, 530
HhaI	GCGC	4 cut(s)	763, 1181, 1183, 1553
Hin1II	CATG	8 cut(s)	147, 192, 585, 768, 1137, 1248, 1448, 1466
Hin6I	GCGC	4 cut(s)	761, 1179, 1181, 1551
HinP1I	GCGC	4 cut(s)	761, 1179, 1181, 1551
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	1 cut(s)	936
HinfI	GANTC	5 cut(s)	117, 290, 300, 492, 1662
HphI	GGTGA	1 cut(s)	813
Hpy166II	GTNNAC	1 cut(s)	619
Hpy188I	TCNGA	4 cut(s)	47, 116, 429, 787
Hpy188III	TCNNGA	5 cut(s)	184, 828, 847, 984, 1245
Hpy8I	GTNNAC	1 cut(s)	619
HpyAV	CCTTC	3 cut(s)	372, 708, 1505
HpyCH4III	ACNGT	3 cut(s)	896, 1309, 1646
HpyCH4IV	ACGT	1 cut(s)	1623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 380, 1536
HpyF3I	CTNAG	5 cut(s)	171, 562, 613, 913, 1113
HpySE526I	ACGT	1 cut(s)	1623
Hsp92II	CATG	8 cut(s)	147, 192, 585, 768, 1137, 1248, 1448, 1466
HspAI	GCGC	4 cut(s)	761, 1179, 1181, 1551
Ksp22I	TGATCA	1 cut(s)	803
Kzo9I	GATC	4 cut(s)	18, 389, 803, 1489
LmnI	GCTCC	7 cut(s)	176, 401, 1373, 1397, 1514, 1565, 1604
LweI	GCATC	4 cut(s)	982, 1040, 1457, 1517
MaeI	CTAG	5 cut(s)	325, 375, 385, 499, 1608
MaeII	ACGT	1 cut(s)	1623
MaeIII	GTNAC	2 cut(s)	672, 1303
MalI	GATC	4 cut(s)	20, 391, 805, 1491
MbiI	CCGCTC	1 cut(s)	1568
MboI	GATC	4 cut(s)	18, 389, 803, 1489
MboII	GAAGA	7 cut(s)	39, 187, 269, 299, 1329, 1487, 1490
MfeI	CAATTG	2 cut(s)	688, 1362
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	1214
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	1135
MroXI	GAANNNNTTC	1 cut(s)	1540
MseI	TTAA	7 cut(s)	84, 556, 634, 952, 1026, 1060, 1125
MslI	CAYNNNNRTG	1 cut(s)	1447
MunI	CAATTG	2 cut(s)	688, 1362
Mva1269I	GAATGC	1 cut(s)	1265
MvnI	CGCG	1 cut(s)	1181
MwoI	GCNNNNNNNGC	3 cut(s)	217, 380, 1536
NcoI	CCATGG	1 cut(s)	764
NdeII	GATC	4 cut(s)	18, 389, 803, 1489
NlaIII	CATG	8 cut(s)	147, 192, 585, 768, 1137, 1248, 1448, 1466
NlaIV	GGNNCC	2 cut(s)	415, 1131
NmuCI	GTSAC	1 cut(s)	672
NspI	RCATGY	2 cut(s)	192, 585
PagI	TCATGA	1 cut(s)	1244
PauI	GCGCGC	1 cut(s)	1179
PciI	ACATGT	1 cut(s)	581
PctI	GAATGC	1 cut(s)	1265
PdmI	GAANNNNTTC	1 cut(s)	1540
PfeI	GAWTC	4 cut(s)	117, 300, 492, 1662
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	1145
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	351
PscI	ACATGT	1 cut(s)	581
PsiI	TTATAA	2 cut(s)	76, 100
Psp5II	RGGWCCY	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	415, 1131
PspPI	GGNCC	3 cut(s)	351, 381, 1130
PspPPI	RGGWCCY	1 cut(s)	351
PstI	CTGCAG	2 cut(s)	308, 368
PsuI	RGATCY	1 cut(s)	389
PteI	GCGCGC	1 cut(s)	1179
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	1447
SaqAI	TTAA	7 cut(s)	84, 556, 634, 952, 1026, 1060, 1125
SatI	GCNGC	1 cut(s)	1144
Sau3AI	GATC	4 cut(s)	18, 389, 803, 1489
Sau96I	GGNCC	3 cut(s)	351, 381, 1130
ScaI	AGTACT	1 cut(s)	57
SchI	GAGTC	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	1214
SfaNI	GCATC	4 cut(s)	982, 1040, 1457, 1517
SfcI	CTRYAG	4 cut(s)	304, 364, 439, 1531
SinI	GGWCC	2 cut(s)	351, 1130
SmiMI	CAYNNNNRTG	1 cut(s)	1447
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
SsiI	CCGC	2 cut(s)	1144, 1568
SspI	AATATT	1 cut(s)	1123
SspMI	CTAG	5 cut(s)	325, 375, 385, 499, 1608
StyI	CCWWGG	3 cut(s)	340, 764, 961
TaaI	ACNGT	3 cut(s)	896, 1309, 1646
TaiI	ACGT	1 cut(s)	1626
TaqI	TCGA	1 cut(s)	1492
TatI	WGTACW	1 cut(s)	55
TauI	GCSGC	1 cut(s)	1146
TfiI	GAWTC	4 cut(s)	117, 300, 492, 1662
Tru1I	TTAA	7 cut(s)	84, 556, 634, 952, 1026, 1060, 1125
Tru9I	TTAA	7 cut(s)	84, 556, 634, 952, 1026, 1060, 1125
TscAI	CASTG	3 cut(s)	252, 1279, 1399
TseFI	GTSAC	1 cut(s)	672
Tsp45I	GTSAC	1 cut(s)	672
TspGWI	ACGGA	3 cut(s)	124, 283, 643
TspRI	CASTG	3 cut(s)	252, 1279, 1399
Van91I	CCANNNNNTGG	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	351, 1130
XapI	RAATTY	4 cut(s)	110, 662, 696, 974
XceI	RCATGY	2 cut(s)	192, 585
XmnI	GAANNNNTTC	1 cut(s)	1540
XspI	CTAG	5 cut(s)	325, 375, 385, 499, 1608
ZrmI	AGTACT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.