Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008274

Physical Location & Seq

Genomic Coordinates Forward (+)

49110748 .. 49111061

Gene Structure 314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0367400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGATGGAGGCGTTGGCTGGTCGTTTGGCATGCAAGATTGCTTTACAGTTTCATCTAACTCCTATTGCTGTGGAGTCTGATTGTCTACAGTTGGTTCAGGCAGATGAGAATCTAATAAAGATTGCTCACAAGTTAGCTAATTGTGCCCTTGTTTCAGGGTTGCAAGTGTCTTGGAGTGGGATTGTCCCTCCTGCATTTGATGAGATCCTTTGTAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

73

Amino Acids

7.86

Weight (kDa)

5.01

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13790 AT1G13790
fragaria_vesca	FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250
malus_domestica	MD00G1012600.v1.1
prunus_persica	Prupe.6G075800_v2.0.a1
pyrus_communis	pycom11g08830
rosa_chinensis	RchiOBHm_Chr5g0065061
rosa_laevigata	RLG00000035749
rosa_multiflora	Rmu_sc0029223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016260
rosa_rugosa	Rorug05G0367300 Rorug05G0367400
rosa_samantha	Rh5AG426000 Rh5BG441100 Rh5CG463700 Rh5DG453800
rosa_wichuraiana	Rw5G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	85
AclWI	GGATC	1 cut(s)	199
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AlwI	GGATC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	108
Bse8I	GATNNNNATC	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	199
BssMI	GATC	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	48, 90
BstC8I	GCNNGC	1 cut(s)	31
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	31
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	2 cut(s)	17, 137
CviKI_1	RGCY	2 cut(s)	17, 137
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
FaeI	CATG	1 cut(s)	33
FaiI	YATR	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	29
FblI	GTMKAC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	33
HinfI	GANTC	2 cut(s)	74, 109
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	48, 90
HpyCH4V	TGCA	3 cut(s)	33, 163, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	204
LpnPI	CCDG	4 cut(s)	3, 83, 141, 204
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	139, 217
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	1 cut(s)	33
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	2 cut(s)	139, 217
TaaI	ACNGT	2 cut(s)	48, 90
TasI	AATT	2 cut(s)	139, 217
TfiI	GAWTC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	41
XceI	RCATGY	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.