Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008274

Physical Location & Seq

Genomic Coordinates Reverse (-)

49104588 .. 49105857

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0367300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGATCATTCCAGTGCGTTGTTTCACCTGTGGAAAGGTGATTGGAAACAAATGGGACACTTATCTTGACCTTCTGCAAGCAGATTACCCCGAAGGTGATGCACTTGATGCATTGGGGTTGGTTCGTTATTGCTGCAGGCGCATGCTTATGACTCACGTCGATCTCATTGAGAAGCTTCTCAACTACAATACTCTGGAGAAGTCGGATAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

71

Amino Acids

8.17

Weight (kDa)

5.11

Isoelectric Point (pI)

25.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_N	PF01194	2 - 59	1e-31	RNA polymerases N / 8 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13790 AT1G13790
fragaria_vesca	FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250
malus_domestica	MD00G1012600.v1.1
prunus_persica	Prupe.6G075800_v2.0.a1
pyrus_communis	pycom11g08830
rosa_chinensis	RchiOBHm_Chr5g0065061
rosa_laevigata	RLG00000035749
rosa_multiflora	Rmu_sc0029223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016260
rosa_rugosa	Rorug05G0367300 Rorug05G0367400
rosa_samantha	Rh5AG426000 Rh5BG441100 Rh5CG463700 Rh5DG453800
rosa_wichuraiana	Rw5G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjiI	CACGTC	1 cut(s)	157
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	141
AsuHPI	GGTGA	3 cut(s)	16, 49, 107
BbvI	GCAGC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BclI	TGATCA	1 cut(s)	3
BfmI	CTRYAG	1 cut(s)	133
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	157
BmsI	GCATC	2 cut(s)	88, 97
BoxI	GACNNNNGTC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	3, 160
BspMAI	CTGCAG	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	11
BssMI	GATC	2 cut(s)	3, 160
Bst4CI	ACNGT	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	78, 137, 143
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	6, 163
BstMBI	GATC	2 cut(s)	3, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 138
BstNSI	RCATGY	1 cut(s)	145
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	119
BtrI	CACGTC	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	3 cut(s)	78, 137, 143
CfoI	GCGC	1 cut(s)	141
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	1 cut(s)	175
CviKI_1	RGCY	1 cut(s)	175
DpnI	GATC	2 cut(s)	5, 162
DpnII	GATC	2 cut(s)	3, 160
EcoT22I	ATGCAT	1 cut(s)	112
FaeI	CATG	1 cut(s)	145
FaiI	YATR	2 cut(s)	143, 149
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	133
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	133
GsuI	CTGGAG	1 cut(s)	215
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	3 cut(s)	16, 49, 107
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	65, 194
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	80, 86
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	76, 101, 110, 135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 138
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 160
LpnPI	CCDG	4 cut(s)	24, 40, 121, 179
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	2 cut(s)	88, 97
MaeII	ACGT	1 cut(s)	156
MalI	GATC	2 cut(s)	5, 162
MboI	GATC	2 cut(s)	3, 160
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	183
Mph1103I	ATGCAT	1 cut(s)	112
MslI	CAYNNNNRTG	2 cut(s)	11, 146
MwoI	GCNNNNNNNGC	2 cut(s)	107, 138
NdeII	GATC	2 cut(s)	3, 160
NlaIII	CATG	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	145
PaeI	GCATGC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PshAI	GACNNNNGTC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	137
RseI	CAYNNNNRTG	2 cut(s)	11, 146
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	2 cut(s)	3, 160
SchI	GAGTC	1 cut(s)	145
SetI	ASST	6 cut(s)	29, 39, 72, 97, 159, 177
SfaNI	GCATC	2 cut(s)	88, 97
SfcI	CTRYAG	1 cut(s)	133
SmiMI	CAYNNNNRTG	2 cut(s)	11, 146
SphI	GCATGC	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	1 cut(s)	132
TspRI	CASTG	1 cut(s)	18
XceI	RCATGY	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.