Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008274

Physical Location & Seq

Genomic Coordinates Reverse (-)

20251508 .. 20256639

Gene Structure 5132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00016260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGTTAGATTTTGTTCTGCATCTCAGGTTTGATATGTCTCACAGATCAAAGGAAGAAAAGGATAAGTGGTCTGATTTCAAGTACTATGAGGACAAGTATTATAATGAGTTAAAGAAAGGTAGTTACAAAATAAAAAATTCTGATTCAACTTACAGATGTCCGTTTTGCCATGAGAAAAGGAGGCGAAGTTACCAACTTAGGGAGCTTTCACGACATGCTTCTTCTATCGGCAGAGGCTCACATAGCAGGGGTATGAAAGATGAAGCCAAGCACTGGGCTTTGAAGAGTTTTATAGATAAATATGTTGCTGTGAAGAGTCGGTTAGAATCTGCAGACAAGATAGAACAGCCTAGAGAACTTGCACCCAAGGAAGGAGGACCTGAACAATCTGCAGTCAAGCTAGAAGGGCCTAGAGATCCTGCTCCCAAGAGAGAACGGGAACCTGCACCCATCAGAGAACTTCCCATAGAGCCTGCACCAAAGAGAGAACGCCATTTAGAGCCTGCACCACAGAGAGAATCCCCTATAGAATCTGCAACCAAGATTGAATCCCCTAGACTGAATGATGATAAATTGTTTGTATGGCCTGTGATGGGCGTTTTGGCAAACATTAAAACTGAGTTCAAAGGTGGGAAACATGTTGGCGAAAGTGGTTCTAAAATGAAAACCGAGTTGACAGCAAAAGGTTTTAACCCTGTGAGGGTTCATCCGTTATGGAATTTTCGGGGTCACTCTGGTTTTGCAATTGTTGAATTTGAGAATAACTGGGAAGGTTTTAACAATGGAATGTCCTTTGAGAAAAGTTTTGAAGTTGAGCGCCATGGAAAAAGGGACTATAATCTGATGAGGAATAAAGGAGATCAATTATATGGATGGGTTGCTCGGGATGATGATTACAATTCAAGAAGCATTGTAAGTGATTATCTTCGCAAGAATGGAGATTTGAAAACTGTTTCTGGTCAGCAAGCTGAGGAACAGAGAAAAACTACAAAGCTTGTATCCAATCTTAAAAACACCTTGGAGATAAAGAATTCACATCTTGAGGAGATGCAAAACAAATATCATAAGACTGCTAATTCCTTAAACAAGGTAGTGCTTGAAAGGGATGTGATACTTAAAGCTTTCAATGACGCATCTCTTGTTCTACTTGCTTCTTGTTTGAGTTGTTACAAATCTGACCTCATTCAAGTTTCAATTTCTAGCATTCCTAAAAATGCAAGGGCTACACTGGAACAGAAAAAAGCTGATGAAAATATGTTACGGTTGGCGGAAGAACAAAAGAATCAAAAGGAGGAACTTCGTAAAAAAGTCATTCAATTGGAAAAGGAGCTGGAAAAAAAACAAGCACTGGAGCTGGAGATAGAGCAGATGAGAGGTGCTTTAAAGACGATGAAACACATGGATGAGGATGAGGACATGGATGCCAAGAAGAAGATTGATGAGATTGAACAAAACTTGGAGGAGAAGGAGCAGGAGTATGAGGCTGTAGAAGCACTTCATCAAGCACTTGTGGTCAAGGAGCGGAGAAATAATGATGAAGTGCAGGAGGCTCGCAAGGAGCTAGTCAATAATGATCTTGTTTCTAGGCATTGTGGATGGAGAGTGCTTCAAGAGCTTCGGTTTTGTGTTGTTGAACGACTGGCTACTGTCGAGCTCTTTGCTCTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

556

Amino Acids

64.69

Weight (kDa)

8.54

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-XS	PF03470	53 - 94	4e-11	XS zinc finger domain
XS	PF03468	190 - 301	1.4e-36	XS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13790 AT1G13790
fragaria_vesca	FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250
malus_domestica	MD00G1012600.v1.1
prunus_persica	Prupe.6G075800_v2.0.a1
pyrus_communis	pycom11g08830
rosa_chinensis	RchiOBHm_Chr5g0065061
rosa_laevigata	RLG00000035749
rosa_multiflora	Rmu_sc0029223.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016260
rosa_rugosa	Rorug05G0367300 Rorug05G0367400
rosa_samantha	Rh5AG426000 Rh5BG441100 Rh5CG463700 Rh5DG453800
rosa_wichuraiana	Rw5G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	451
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccBSI	CCGCTC	1 cut(s)	1522
AciI	CCGC	2 cut(s)	1268, 1522
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	4 cut(s)	136, 718, 752, 1030
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	5 cut(s)	199, 273, 371, 593, 700
AflIII	ACRYGT	1 cut(s)	637
Alw21I	GWGCWC	1 cut(s)	1656
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	882
AoxI	GGCC	2 cut(s)	407, 584
ApoI	RAATTY	4 cut(s)	136, 718, 752, 1030
Asp700I	GAANNNNTTC	1 cut(s)	1494
AspLEI	GCGC	1 cut(s)	819
AspS9I	GGNCC	2 cut(s)	377, 407
AvaI	CYCGRG	1 cut(s)	882
AvaII	GGWCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	1656
BarI	GAAGNNNNNNTAC	2 cut(s)	1479, 1511
Bbv12I	GWGCWC	1 cut(s)	1656
BbvCI	CCTCAGC	1 cut(s)	969
BccI	CCATC	4 cut(s)	458, 586, 867, 1590
BcgI	CGANNNNNNTGC	3 cut(s)	1532, 1566, 1640
BciVI	GTATCC	1 cut(s)	1009
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	7 cut(s)	351, 401, 411, 555, 1200, 1562, 1584
BfmI	CTRYAG	4 cut(s)	330, 390, 525, 1485
BfoI	RGCGCY	1 cut(s)	820
BfuAI	ACCTGC	1 cut(s)	451
BfuI	GTATCC	1 cut(s)	1009
BmcAI	AGTACT	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	882
BmgT120I	GGNCC	2 cut(s)	377, 407
BmiI	GGNNCC	1 cut(s)	441
BmrI	ACTGGG	2 cut(s)	283, 775
BmsI	GCATC	4 cut(s)	28, 1038, 1142, 1411
BmuI	ACTGGG	2 cut(s)	283, 775
BpmI	CTGGAG	2 cut(s)	1370, 1376
Bpu10I	CCTNAGC	1 cut(s)	969
BpuEI	CTTGAG	1 cut(s)	1061
BsaJI	CCNNGG	3 cut(s)	366, 820, 1017
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 202, 1460, 1490
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 273, 371, 593, 700
Bse1I	ACTGG	5 cut(s)	278, 770, 1233, 1353, 1644
BseDI	CCNNGG	3 cut(s)	366, 820, 1017
BseGI	GGATG	8 cut(s)	706, 878, 892, 1111, 1408, 1414, 1426, 1601
BseLI	CCNNNNNNNGG	5 cut(s)	199, 273, 371, 593, 700
BseMII	CTCAG	3 cut(s)	37, 609, 960
BseNI	ACTGG	5 cut(s)	278, 770, 1233, 1353, 1644
BseRI	GAGGAG	2 cut(s)	1058, 1475
BsgI	GTGCAG	4 cut(s)	429, 459, 489, 1562
BshFI	GGCC	2 cut(s)	409, 586
BsiHKAI	GWGCWC	1 cut(s)	1656
BsiHKCI	CYCGRG	1 cut(s)	882
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	5 cut(s)	199, 273, 371, 593, 700
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	845
BsmI	GAATGC	1 cut(s)	1203
BsnI	GGCC	2 cut(s)	409, 586
BsoBI	CYCGRG	1 cut(s)	882
Bsp1286I	GDGCHC	1 cut(s)	1656
Bsp143I	GATC	4 cut(s)	44, 415, 859, 1573
Bsp19I	CCATGG	1 cut(s)	820
BspACI	CCGC	2 cut(s)	1268, 1522
BspANI	GGCC	2 cut(s)	409, 586
BspCNI	CTCAG	3 cut(s)	36, 610, 961
BspLI	GGNNCC	1 cut(s)	441
BspMAI	CTGCAG	2 cut(s)	334, 394
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	1522
BsrI	ACTGG	5 cut(s)	278, 770, 1233, 1353, 1644
BssECI	CCNNGG	3 cut(s)	366, 820, 1017
BssMI	GATC	4 cut(s)	44, 415, 859, 1573
BssT1I	CCWWGG	3 cut(s)	366, 820, 1017
Bst4CI	ACNGT	3 cut(s)	952, 1263, 1648
Bst6I	CTCTTC	2 cut(s)	278, 308
BstC8I	GCNNGC	4 cut(s)	474, 504, 966, 1552
BstDEI	CTNAG	4 cut(s)	23, 197, 618, 969
BstDSI	CCRYGG	1 cut(s)	820
BstF5I	GGATG	8 cut(s)	706, 878, 892, 1111, 1408, 1414, 1426, 1601
BstH2I	RGCGCY	1 cut(s)	820
BstHHI	GCGC	1 cut(s)	819
BstKTI	GATC	4 cut(s)	47, 418, 862, 1576
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	4 cut(s)	44, 415, 859, 1573
BstMWI	GCNNNNNNNGC	4 cut(s)	243, 406, 1490, 1612
BstNSI	RCATGY	2 cut(s)	218, 641
BstSFI	CTRYAG	4 cut(s)	330, 390, 525, 1485
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	1009
BsuRI	GGCC	2 cut(s)	409, 586
BtgI	CCRYGG	1 cut(s)	820
BtsCI	GGATG	8 cut(s)	706, 878, 892, 1111, 1408, 1414, 1426, 1601
BtsIMutI	CAGTG	3 cut(s)	271, 1226, 1346
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	4 cut(s)	474, 504, 966, 1552
CfoI	GCGC	1 cut(s)	819
Cfr13I	GGNCC	2 cut(s)	377, 407
CseI	GACGC	1 cut(s)	1139
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	6 cut(s)	170, 215, 638, 821, 1399, 1417
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	4 cut(s)	23, 197, 618, 969
DpnI	GATC	4 cut(s)	46, 417, 861, 1575
DpnII	GATC	4 cut(s)	44, 415, 859, 1573
DraI	TTTAAA	1 cut(s)	1383
Eam1104I	CTCTTC	2 cut(s)	278, 308
EarI	CTCTTC	2 cut(s)	278, 308
EciI	GGCGGA	1 cut(s)	1283
Ecl136II	GAGCTC	1 cut(s)	1654
Eco130I	CCWWGG	3 cut(s)	366, 820, 1017
Eco24I	GRGCYC	1 cut(s)	1656
Eco47I	GGWCC	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	1654
Eco88I	CYCGRG	1 cut(s)	882
EcoICRI	GAGCTC	1 cut(s)	1654
EcoO109I	RGGNCCY	2 cut(s)	377, 407
EcoRI	GAATTC	1 cut(s)	1030
EcoT14I	CCWWGG	3 cut(s)	366, 820, 1017
EcoT38I	GRGCYC	1 cut(s)	1656
ErhI	CCWWGG	3 cut(s)	366, 820, 1017
FaeI	CATG	6 cut(s)	173, 218, 641, 824, 1402, 1420
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	6 cut(s)	169, 214, 637, 820, 1398, 1416
FokI	GGATG	8 cut(s)	693, 885, 899, 1118, 1415, 1421, 1433, 1608
FriOI	GRGCYC	1 cut(s)	1656
FspBI	CTAG	7 cut(s)	351, 401, 411, 555, 1200, 1562, 1584
GlaI	GCGC	1 cut(s)	818
GsuI	CTGGAG	2 cut(s)	1370, 1376
HaeII	RGCGCY	1 cut(s)	820
HaeIII	GGCC	2 cut(s)	409, 586
HgaI	GACGC	1 cut(s)	1139
HhaI	GCGC	1 cut(s)	819
Hin1II	CATG	6 cut(s)	173, 218, 641, 824, 1402, 1420
Hin6I	GCGC	1 cut(s)	817
HinP1I	GCGC	1 cut(s)	817
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HindIII	AAGCTT	2 cut(s)	992, 1119
HinfI	GANTC	7 cut(s)	143, 316, 326, 518, 530, 548, 1282
Hpy166II	GTNNAC	1 cut(s)	675
Hpy188I	TCNGA	5 cut(s)	73, 142, 455, 843, 1177
Hpy188III	TCNNGA	5 cut(s)	210, 884, 903, 1040, 1610
Hpy8I	GTNNAC	1 cut(s)	675
HpyAV	CCTTC	4 cut(s)	365, 398, 764, 1459
HpyCH4III	ACNGT	3 cut(s)	952, 1263, 1648
HpyF10VI	GCNNNNNNNGC	4 cut(s)	243, 406, 1490, 1612
HpyF3I	CTNAG	4 cut(s)	23, 197, 618, 969
Hsp92II	CATG	6 cut(s)	173, 218, 641, 824, 1402, 1420
HspAI	GCGC	1 cut(s)	817
Kzo9I	GATC	4 cut(s)	44, 415, 859, 1573
LmnI	GCTCC	7 cut(s)	202, 427, 1327, 1351, 1468, 1519, 1558
LweI	GCATC	4 cut(s)	28, 1038, 1142, 1411
MaeI	CTAG	7 cut(s)	351, 401, 411, 555, 1200, 1562, 1584
MaeIII	GTNAC	5 cut(s)	122, 188, 728, 1166, 1257
MalI	GATC	4 cut(s)	46, 417, 861, 1575
MbiI	CCGCTC	1 cut(s)	1522
MboI	GATC	4 cut(s)	44, 415, 859, 1573
MboII	GAAGA	8 cut(s)	65, 213, 295, 325, 917, 1283, 1441, 1444
MfeI	CAATTG	2 cut(s)	744, 1316
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	1656
MlyI	GAGTC	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	1494
MseI	TTAA	9 cut(s)	110, 612, 690, 777, 1008, 1082, 1116, 1382, 1669
MslI	CAYNNNNRTG	1 cut(s)	1401
MunI	CAATTG	2 cut(s)	744, 1316
Mva1269I	GAATGC	1 cut(s)	1203
MwoI	GCNNNNNNNGC	4 cut(s)	243, 406, 1490, 1612
NcoI	CCATGG	1 cut(s)	820
NdeII	GATC	4 cut(s)	44, 415, 859, 1573
NlaIII	CATG	6 cut(s)	173, 218, 641, 824, 1402, 1420
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	728
NspI	RCATGY	2 cut(s)	218, 641
PciI	ACATGT	1 cut(s)	637
PctI	GAATGC	1 cut(s)	1203
PdmI	GAANNNNTTC	1 cut(s)	1494
PfeI	GAWTC	6 cut(s)	143, 326, 518, 530, 548, 1282
PflMI	CCANNNNNTGG	1 cut(s)	273
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PpuMI	RGGWCCY	1 cut(s)	377
PscI	ACATGT	1 cut(s)	637
PsiI	TTATAA	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	1656
Psp5II	RGGWCCY	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	377, 407
PspPPI	RGGWCCY	1 cut(s)	377
PstI	CTGCAG	2 cut(s)	334, 394
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	1401
SacI	GAGCTC	1 cut(s)	1656
SaqAI	TTAA	9 cut(s)	110, 612, 690, 777, 1008, 1082, 1116, 1382, 1669
Sau3AI	GATC	4 cut(s)	44, 415, 859, 1573
Sau96I	GGNCC	2 cut(s)	377, 407
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	1656
SfaNI	GCATC	4 cut(s)	28, 1038, 1142, 1411
SfcI	CTRYAG	4 cut(s)	330, 390, 525, 1485
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	1401
SmlI	CTYRAG	1 cut(s)	1040
SmoI	CTYRAG	1 cut(s)	1040
SsiI	CCGC	2 cut(s)	1268, 1522
SspMI	CTAG	7 cut(s)	351, 401, 411, 555, 1200, 1562, 1584
SstI	GAGCTC	1 cut(s)	1656
StyI	CCWWGG	3 cut(s)	366, 820, 1017
TaaI	ACNGT	3 cut(s)	952, 1263, 1648
TaqI	TCGA	1 cut(s)	1650
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	6 cut(s)	143, 326, 518, 530, 548, 1282
Tru1I	TTAA	9 cut(s)	110, 612, 690, 777, 1008, 1082, 1116, 1382, 1669
Tru9I	TTAA	9 cut(s)	110, 612, 690, 777, 1008, 1082, 1116, 1382, 1669
TscAI	CASTG	3 cut(s)	278, 1233, 1353
TseFI	GTSAC	1 cut(s)	728
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	8 cut(s)	269, 276, 677, 695, 1263, 1406, 1487, 1551
TspGWI	ACGGA	2 cut(s)	150, 699
TspRI	CASTG	3 cut(s)	278, 1233, 1353
Van91I	CCANNNNNTGG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	4 cut(s)	136, 718, 752, 1030
XceI	RCATGY	2 cut(s)	218, 641
XmnI	GAANNNNTTC	1 cut(s)	1494
XspI	CTAG	7 cut(s)	351, 401, 411, 555, 1200, 1562, 1584
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.