Rh5DG453800

XH domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
72414799 .. 72427647
12849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG453800.1

Sequence Viewer

Length: 1587 bp
ATGCCTGTGAGCGATGCAATGAAACTGCGAAGGTTTGATATGTCTCACAGATCAAAGGAAGAAAAGGATAAGTGGTCTGATTTCAAGTACTATGAGGACAAGTATTATAATGAGTTAAAGAAAGGTAGTTATAAAATAAAAAATTCTGATTCAACTTACAGATGTCCGTTTTGCCATGAGAAAAGGAGGCAAAATTACCAACTTAGGGAGCTTTCACGACATGCTTCTTCTATCGGCAGAGGCTCACATAGCAGGGGTATAAAAGATGAAGCCAAGCACTGGGCTTTGAAGAGTTATATAGATAAATATGTTGCTGTGAAGAGTCGGTTAGAATCTGCAGACAAGATAGAACGGCCTAGAGAACTTGCACCCAAGGTAGGAGGACCTGAACAATCTGCAGTCAAGCTAGAAGGGCCTAGAGATCCTGCTCCCAAGAGAGAACGGGAACCTGCACCCATCAGAGAACTTCCTATAGAGCCTGCACCAAAGAGAGAACGCCATTTAGAGCCTGCACCACAGACAGAATCCCCTATAGAATCTGCAACCAAGATTGAATCCCTTAGACTGAATGATGATAAATTGTTTGTATGGCCTGTGATGGGCGTTTTGGCAAACATTAAAACTGAGTTCAAAGGTGGGAAACATGTTGGCGAAAGTGGTTCTAAAATGAAAGCTGAGTTGACAGCAAAAGGTTTTAACCCTGTGAGGGTTCATCCGTTATGGAATTTTCGGGGTCACTCTGGTTTTGCAATTGTTGAATTTGAGAATAACTGGGAAGGTTTCAACAATGGAATGTCCTTTGAGAAAAGTTTTGAAGTTGAGCGCCATGGAAAAAGGGACTATAATCTGATGAGGAATAAAGGAGATCAATTATATGGATGGGTTGCTCGGGATGATGATTACAATTCAAGAAGCATTGTAAGTGATTATCTTTGCAAGAATGGAGATTTGAAAACTGTTTCTGGTCAGCAAGCTGAGGAACAGAGAAAAACTACAAAGCTTGTATCCAATCTTAAAAACACCTTGGAGATAAAGAATTCACATCTTGAGGAGATGCAAAACAAATATCATAAGACTGCTAATTCCTTAAACAAGGTAGTGCTTGAAAGGGATGCGATACTTAAAGCGTTCAATGACGAAAGAGAGAAAAGGGAACAAATGGAAAAAGAACAGCTCAGCAGAATATTAAGGGACCATGAGAAAGCCGCAGAGCAGTTGGAAAATCAAAAAAAAGAGCTTGCGCGCCGTGAGAAGCAACTGCAACAACGCAGAGCACAAAATGATAGCGAGAGGAGGAAACTCCATCATGATAGGCAAATGGGATTATGGGATTCAACAAGCCAGGGCAATAAGACCCGTGTTCTTATTGGTGTGAAGAGAATGGGAGACCTTGACGTCAGACCATTTCAGATTGCTATCAAGAACAGATATTCTAAAAAAGAAGCGGATGTGAAGACATTGGAGGTATGCTCTCTTTGGGAGACATATCTTGCGGATCCAAACTGGCATCCATTCAAGATCATTACTGATAAAGAAGGGCATTTTAAGAAATCTGTGAAGCAAACACGACCCGTGGTAGAGATTTGA

Protein Analysis

528

Amino Acids

61.73

Weight (kDa)

9.52

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-XS PF03470 55 - 96 1.2e-11 XS zinc finger domain
XS PF03468 192 - 303 1.2e-36 XS domain
XH PF03469 459 - 519 2.1e-16 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 108, 132
AasI GACNNNNNNGTC 1 cut(s) 1394
AatII GACGTC 1 cut(s) 1398
Acc36I ACCTGC 1 cut(s) 457
AccB7I CCANNNNNTGG 1 cut(s) 279
AccII CGCG 1 cut(s) 1243
AciI CCGC 3 cut(s) 1206, 1445, 1493
AclWI GGATC 3 cut(s) 416, 1490, 1503
AcsI RAATTY 4 cut(s) 142, 724, 758, 1036
AcyI GRCGYC 1 cut(s) 1395
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 5 cut(s) 205, 279, 377, 599, 706
AflIII ACRYGT 1 cut(s) 643
AjnI CCWGG 1 cut(s) 1341
AluBI AGCT 7 cut(s) 211, 406, 674, 974, 1000, 1174, 1237
AluI AGCT 7 cut(s) 211, 406, 674, 974, 1000, 1174, 1237
Alw21I GWGCWC 1 cut(s) 1276
Alw26I GTCTC 3 cut(s) 48, 1380, 1475
AlwI GGATC 3 cut(s) 416, 1490, 1503
Ama87I CYCGRG 1 cut(s) 888
AoxI GGCC 3 cut(s) 353, 413, 590
ApoI RAATTY 4 cut(s) 142, 724, 758, 1036
AspLEI GCGC 3 cut(s) 825, 1243, 1245
AspS9I GGNCC 3 cut(s) 383, 413, 1192
AvaI CYCGRG 1 cut(s) 888
AvaII GGWCC 2 cut(s) 383, 1192
BamHI GGATCC 1 cut(s) 1495
BbsI GAAGAC 1 cut(s) 1460
Bbv12I GWGCWC 1 cut(s) 1276
BbvCI CCTCAGC 1 cut(s) 975
BccI CCATC 4 cut(s) 464, 592, 873, 1311
BceAI ACGGC 2 cut(s) 368, 1230
BciT130I CCWGG 1 cut(s) 1343
BciVI GTATCC 1 cut(s) 1015
BcoDI GTCTC 3 cut(s) 48, 1380, 1475
BfaI CTAG 3 cut(s) 357, 407, 417
BfmI CTRYAG 4 cut(s) 336, 396, 471, 531
BfoI RGCGCY 1 cut(s) 826
BfuAI ACCTGC 1 cut(s) 457
BfuI GTATCC 1 cut(s) 1015
BisI GCNGC 1 cut(s) 1206
BlpI GCTNAGC 1 cut(s) 1175
BlsI GCNGC 1 cut(s) 1207
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 1343
Bme18I GGWCC 2 cut(s) 383, 1192
BmeT110I CYCGRG 1 cut(s) 888
BmgT120I GGNCC 3 cut(s) 383, 413, 1192
BmiI GGNNCC 3 cut(s) 447, 1193, 1497
BmrFI CCNGG 1 cut(s) 1343
BmrI ACTGGG 2 cut(s) 289, 781
BmsI GCATC 4 cut(s) 4, 1044, 1102, 1516
BmuI ACTGGG 2 cut(s) 289, 781
BpiI GAAGAC 1 cut(s) 1460
BplI GAGNNNNNCTC 2 cut(s) 1454, 1486
Bpu10I CCTNAGC 1 cut(s) 975
Bpu1102I GCTNAGC 1 cut(s) 1175
BpuEI CTTGAG 1 cut(s) 1067
BsaBI GATNNNNATC 1 cut(s) 1415
BsaHI GRCGYC 1 cut(s) 1395
BsaI GGTCTC 1 cut(s) 1380
BsaJI CCNNGG 5 cut(s) 372, 826, 1023, 1342, 1572
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 279, 377, 599, 706
Bse1I ACTGG 3 cut(s) 284, 776, 1508
Bse3DI GCAATG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 1415
BseBI CCWGG 1 cut(s) 1343
BseDI CCNNGG 5 cut(s) 372, 826, 1023, 1342, 1572
BseGI GGATG 6 cut(s) 712, 884, 898, 1117, 1453, 1507
BseJI GATNNNNATC 1 cut(s) 1415
BseLI CCNNNNNNNGG 5 cut(s) 205, 279, 377, 599, 706
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 4 cut(s) 615, 666, 966, 1189
BseNI ACTGG 3 cut(s) 284, 776, 1508
BsePI GCGCGC 1 cut(s) 1241
BseRI GAGGAG 2 cut(s) 1064, 1306
BsgI GTGCAG 3 cut(s) 435, 465, 495
Bsh1236I CGCG 1 cut(s) 1243
BshFI GGCC 3 cut(s) 355, 415, 592
BsiHKAI GWGCWC 1 cut(s) 1276
BsiHKCI CYCGRG 1 cut(s) 888
BslFI GGGAC 2 cut(s) 851, 1205
BslI CCNNNNNNNGG 5 cut(s) 205, 279, 377, 599, 706
BsmAI GTCTC 3 cut(s) 48, 1380, 1475
BsmFI GGGAC 2 cut(s) 851, 1205
BsnI GGCC 3 cut(s) 355, 415, 592
Bso31I GGTCTC 1 cut(s) 1380
BsoBI CYCGRG 1 cut(s) 888
Bsp1286I GDGCHC 1 cut(s) 1276
Bsp143I GATC 5 cut(s) 50, 421, 865, 1495, 1518
Bsp1720I GCTNAGC 1 cut(s) 1175
Bsp19I CCATGG 1 cut(s) 826
BspACI CCGC 3 cut(s) 1206, 1445, 1493
BspANI GGCC 3 cut(s) 355, 415, 592
BspCNI CTCAG 4 cut(s) 616, 667, 967, 1188
BspFNI CGCG 1 cut(s) 1243
BspHI TCATGA 1 cut(s) 1306
BspLI GGNNCC 3 cut(s) 447, 1193, 1497
BspMAI CTGCAG 2 cut(s) 340, 400
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 3 cut(s) 416, 1490, 1503
BspTNI GGTCTC 1 cut(s) 1380
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 3 cut(s) 284, 776, 1508
BssECI CCNNGG 5 cut(s) 372, 826, 1023, 1342, 1572
BssHII GCGCGC 1 cut(s) 1241
BssMI GATC 5 cut(s) 50, 421, 865, 1495, 1518
BssNI GRCGYC 1 cut(s) 1395
BssT1I CCWWGG 3 cut(s) 372, 826, 1023
Bst2UI CCWGG 1 cut(s) 1343
Bst4CI ACNGT 1 cut(s) 958
Bst6I CTCTTC 3 cut(s) 284, 314, 1370
BstACI GRCGYC 1 cut(s) 1395
BstC8I GCNNGC 5 cut(s) 480, 510, 972, 1239, 1243
BstDEI CTNAG 6 cut(s) 203, 560, 624, 675, 975, 1175
BstDSI CCRYGG 2 cut(s) 826, 1572
BstF5I GGATG 6 cut(s) 712, 884, 898, 1117, 1453, 1507
BstFNI CGCG 1 cut(s) 1243
BstH2I RGCGCY 1 cut(s) 826
BstHHI GCGC 3 cut(s) 825, 1243, 1245
BstKTI GATC 5 cut(s) 53, 424, 868, 1498, 1521
BstMAI GTCTC 3 cut(s) 48, 1380, 1475
BstMBI GATC 5 cut(s) 50, 421, 865, 1495, 1518
BstMWI GCNNNNNNNGC 2 cut(s) 249, 412
BstNI CCWGG 1 cut(s) 1343
BstNSI RCATGY 2 cut(s) 224, 647
BstSCI CCNGG 1 cut(s) 1341
BstSFI CTRYAG 4 cut(s) 336, 396, 471, 531
BstUI CGCG 1 cut(s) 1243
BstV2I GAAGAC 1 cut(s) 1460
BstX2I RGATCY 2 cut(s) 421, 1495
BstYI RGATCY 2 cut(s) 421, 1495
BsuI GTATCC 1 cut(s) 1015
BsuRI GGCC 3 cut(s) 355, 415, 592
BtgI CCRYGG 2 cut(s) 826, 1572
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 6 cut(s) 712, 884, 898, 1117, 1453, 1507
BtsIMutI CAGTG 1 cut(s) 277
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 5 cut(s) 480, 510, 972, 1239, 1243
CciI TCATGA 1 cut(s) 1306
CfoI GCGC 3 cut(s) 825, 1243, 1245
Cfr13I GGNCC 3 cut(s) 383, 413, 1192
Csp6I GTAC 1 cut(s) 88
CviAII CATG 6 cut(s) 176, 221, 644, 827, 1196, 1307
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 6 cut(s) 203, 560, 624, 675, 975, 1175
DpnI GATC 5 cut(s) 52, 423, 867, 1497, 1520
DpnII GATC 5 cut(s) 50, 421, 865, 1495, 1518
DrdI GACNNNNNNGTC 1 cut(s) 1394
DseDI GACNNNNNNGTC 1 cut(s) 1394
Eam1104I CTCTTC 3 cut(s) 284, 314, 1370
EarI CTCTTC 3 cut(s) 284, 314, 1370
Eco130I CCWWGG 3 cut(s) 372, 826, 1023
Eco31I GGTCTC 1 cut(s) 1380
Eco47I GGWCC 2 cut(s) 383, 1192
Eco88I CYCGRG 1 cut(s) 888
EcoO109I RGGNCCY 2 cut(s) 383, 413
EcoRI GAATTC 1 cut(s) 1036
EcoRII CCWGG 1 cut(s) 1341
EcoT14I CCWWGG 3 cut(s) 372, 826, 1023
ErhI CCWWGG 3 cut(s) 372, 826, 1023
FaeI CATG 6 cut(s) 179, 224, 647, 830, 1199, 1310
FaqI GGGAC 2 cut(s) 851, 1205
FatI CATG 6 cut(s) 175, 220, 643, 826, 1195, 1306
Fnu4HI GCNGC 1 cut(s) 1206
FokI GGATG 6 cut(s) 699, 891, 905, 1124, 1460, 1494
Fsp4HI GCNGC 1 cut(s) 1206
FspBI CTAG 3 cut(s) 357, 407, 417
GlaI GCGC 3 cut(s) 824, 1242, 1244
GluI GCNGC 1 cut(s) 1206
HaeII RGCGCY 1 cut(s) 826
HaeIII GGCC 3 cut(s) 355, 415, 592
HhaI GCGC 3 cut(s) 825, 1243, 1245
Hin1I GRCGYC 1 cut(s) 1395
Hin1II CATG 6 cut(s) 179, 224, 647, 830, 1199, 1310
Hin6I GCGC 3 cut(s) 823, 1241, 1243
HinP1I GCGC 3 cut(s) 823, 1241, 1243
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 7 cut(s) 149, 322, 332, 524, 536, 554, 1331
Hpy166II GTNNAC 1 cut(s) 681
Hpy188I TCNGA 6 cut(s) 79, 148, 461, 849, 1400, 1410
Hpy188III TCNNGA 7 cut(s) 216, 890, 909, 1046, 1307, 1420, 1516
Hpy8I GTNNAC 1 cut(s) 681
HpyAV CCTTC 4 cut(s) 24, 404, 770, 1529
HpyCH4III ACNGT 1 cut(s) 958
HpyCH4IV ACGT 1 cut(s) 1395
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 412
HpyF3I CTNAG 6 cut(s) 203, 560, 624, 675, 975, 1175
HpySE526I ACGT 1 cut(s) 1395
Hsp92I GRCGYC 1 cut(s) 1395
Hsp92II CATG 6 cut(s) 179, 224, 647, 830, 1199, 1310
HspAI GCGC 3 cut(s) 823, 1241, 1243
Kzo9I GATC 5 cut(s) 50, 421, 865, 1495, 1518
LmnI GCTCC 2 cut(s) 208, 433
LweI GCATC 4 cut(s) 4, 1044, 1102, 1516
MaeI CTAG 3 cut(s) 357, 407, 417
MaeII ACGT 1 cut(s) 1395
MaeIII GTNAC 1 cut(s) 734
MalI GATC 5 cut(s) 52, 423, 867, 1497, 1520
MboI GATC 5 cut(s) 50, 421, 865, 1495, 1518
MboII GAAGA 6 cut(s) 71, 219, 301, 331, 1387, 1465
MfeI CAATTG 1 cut(s) 750
MflI RGATCY 2 cut(s) 421, 1495
MhlI GDGCHC 1 cut(s) 1276
MlyI GAGTC 1 cut(s) 331
MmeI TCCRAC 1 cut(s) 1197
MseI TTAA 8 cut(s) 116, 618, 696, 1014, 1088, 1122, 1187, 1545
MspR9I CCNGG 1 cut(s) 1343
MunI CAATTG 1 cut(s) 750
MvaI CCWGG 1 cut(s) 1343
MvnI CGCG 1 cut(s) 1243
MwoI GCNNNNNNNGC 2 cut(s) 249, 412
NcoI CCATGG 1 cut(s) 826
NdeII GATC 5 cut(s) 50, 421, 865, 1495, 1518
NlaIII CATG 6 cut(s) 179, 224, 647, 830, 1199, 1310
NlaIV GGNNCC 3 cut(s) 447, 1193, 1497
NmuCI GTSAC 1 cut(s) 734
NspI RCATGY 2 cut(s) 224, 647
PagI TCATGA 1 cut(s) 1306
PauI GCGCGC 1 cut(s) 1241
PciI ACATGT 1 cut(s) 643
PfeI GAWTC 6 cut(s) 149, 332, 524, 536, 554, 1331
PflMI CCANNNNNTGG 1 cut(s) 279
PkrI GCNGC 1 cut(s) 1207
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
PpuMI RGGWCCY 1 cut(s) 383
PscI ACATGT 1 cut(s) 643
PsiI TTATAA 2 cut(s) 108, 132
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 1341
PspGI CCWGG 1 cut(s) 1341
PspN4I GGNNCC 3 cut(s) 447, 1193, 1497
PspPI GGNCC 3 cut(s) 383, 413, 1192
PspPPI RGGWCCY 1 cut(s) 383
PstI CTGCAG 2 cut(s) 340, 400
PsuI RGATCY 2 cut(s) 421, 1495
PteI GCGCGC 1 cut(s) 1241
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 8 cut(s) 116, 618, 696, 1014, 1088, 1122, 1187, 1545
SatI GCNGC 1 cut(s) 1206
Sau3AI GATC 5 cut(s) 50, 421, 865, 1495, 1518
Sau96I GGNCC 3 cut(s) 383, 413, 1192
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 1 cut(s) 1343
SduI GDGCHC 1 cut(s) 1276
SfaNI GCATC 4 cut(s) 4, 1044, 1102, 1516
SfcI CTRYAG 4 cut(s) 336, 396, 471, 531
SinI GGWCC 2 cut(s) 383, 1192
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
SsiI CCGC 3 cut(s) 1206, 1445, 1493
SspI AATATT 1 cut(s) 1185
SspMI CTAG 3 cut(s) 357, 407, 417
StyD4I CCNGG 1 cut(s) 1341
StyI CCWWGG 3 cut(s) 372, 826, 1023
TaaI ACNGT 1 cut(s) 958
TaiI ACGT 1 cut(s) 1398
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 1208
TfiI GAWTC 6 cut(s) 149, 332, 524, 536, 554, 1331
Tru1I TTAA 8 cut(s) 116, 618, 696, 1014, 1088, 1122, 1187, 1545
Tru9I TTAA 8 cut(s) 116, 618, 696, 1014, 1088, 1122, 1187, 1545
TscAI CASTG 1 cut(s) 284
TseFI GTSAC 1 cut(s) 734
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 4 cut(s) 35, 282, 683, 701
TspGWI ACGGA 2 cut(s) 156, 705
TspRI CASTG 1 cut(s) 284
Van91I CCANNNNNTGG 1 cut(s) 279
VpaK11BI GGWCC 2 cut(s) 383, 1192
XapI RAATTY 4 cut(s) 142, 724, 758, 1036
XceI RCATGY 2 cut(s) 224, 647
XspI CTAG 3 cut(s) 357, 407, 417
ZraI GACGTC 1 cut(s) 1396
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.