XH domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13790 AT1G13790 |
| fragaria_vesca | FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 |
| malus_domestica | MD00G1012600.v1.1 |
| prunus_persica | Prupe.6G075800_v2.0.a1 |
| pyrus_communis | pycom11g08830 |
| rosa_chinensis | RchiOBHm_Chr5g0065061 |
| rosa_laevigata | RLG00000035749 |
| rosa_multiflora | Rmu_sc0029223.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00016260 |
| rosa_rugosa | Rorug05G0367300 Rorug05G0367400 |
| rosa_samantha | Rh5AG426000 Rh5BG441100 Rh5CG463700 Rh5DG453800 |
| rosa_wichuraiana | Rw5G040010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 108, 132 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1394 |
| AatII | GACGTC | 1 cut(s) | 1398 |
| Acc36I | ACCTGC | 1 cut(s) | 457 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 279 |
| AccII | CGCG | 1 cut(s) | 1243 |
| AciI | CCGC | 3 cut(s) | 1206, 1445, 1493 |
| AclWI | GGATC | 3 cut(s) | 416, 1490, 1503 |
| AcsI | RAATTY | 4 cut(s) | 142, 724, 758, 1036 |
| AcyI | GRCGYC | 1 cut(s) | 1395 |
| AfaI | GTAC | 1 cut(s) | 89 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 205, 279, 377, 599, 706 |
| AflIII | ACRYGT | 1 cut(s) | 643 |
| AjnI | CCWGG | 1 cut(s) | 1341 |
| AluBI | AGCT | 7 cut(s) | 211, 406, 674, 974, 1000, 1174, 1237 |
| AluI | AGCT | 7 cut(s) | 211, 406, 674, 974, 1000, 1174, 1237 |
| Alw21I | GWGCWC | 1 cut(s) | 1276 |
| Alw26I | GTCTC | 3 cut(s) | 48, 1380, 1475 |
| AlwI | GGATC | 3 cut(s) | 416, 1490, 1503 |
| Ama87I | CYCGRG | 1 cut(s) | 888 |
| AoxI | GGCC | 3 cut(s) | 353, 413, 590 |
| ApoI | RAATTY | 4 cut(s) | 142, 724, 758, 1036 |
| AspLEI | GCGC | 3 cut(s) | 825, 1243, 1245 |
| AspS9I | GGNCC | 3 cut(s) | 383, 413, 1192 |
| AvaI | CYCGRG | 1 cut(s) | 888 |
| AvaII | GGWCC | 2 cut(s) | 383, 1192 |
| BamHI | GGATCC | 1 cut(s) | 1495 |
| BbsI | GAAGAC | 1 cut(s) | 1460 |
| Bbv12I | GWGCWC | 1 cut(s) | 1276 |
| BbvCI | CCTCAGC | 1 cut(s) | 975 |
| BccI | CCATC | 4 cut(s) | 464, 592, 873, 1311 |
| BceAI | ACGGC | 2 cut(s) | 368, 1230 |
| BciT130I | CCWGG | 1 cut(s) | 1343 |
| BciVI | GTATCC | 1 cut(s) | 1015 |
| BcoDI | GTCTC | 3 cut(s) | 48, 1380, 1475 |
| BfaI | CTAG | 3 cut(s) | 357, 407, 417 |
| BfmI | CTRYAG | 4 cut(s) | 336, 396, 471, 531 |
| BfoI | RGCGCY | 1 cut(s) | 826 |
| BfuAI | ACCTGC | 1 cut(s) | 457 |
| BfuI | GTATCC | 1 cut(s) | 1015 |
| BisI | GCNGC | 1 cut(s) | 1206 |
| BlpI | GCTNAGC | 1 cut(s) | 1175 |
| BlsI | GCNGC | 1 cut(s) | 1207 |
| BmcAI | AGTACT | 1 cut(s) | 89 |
| Bme1390I | CCNGG | 1 cut(s) | 1343 |
| Bme18I | GGWCC | 2 cut(s) | 383, 1192 |
| BmeT110I | CYCGRG | 1 cut(s) | 888 |
| BmgT120I | GGNCC | 3 cut(s) | 383, 413, 1192 |
| BmiI | GGNNCC | 3 cut(s) | 447, 1193, 1497 |
| BmrFI | CCNGG | 1 cut(s) | 1343 |
| BmrI | ACTGGG | 2 cut(s) | 289, 781 |
| BmsI | GCATC | 4 cut(s) | 4, 1044, 1102, 1516 |
| BmuI | ACTGGG | 2 cut(s) | 289, 781 |
| BpiI | GAAGAC | 1 cut(s) | 1460 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1454, 1486 |
| Bpu10I | CCTNAGC | 1 cut(s) | 975 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1175 |
| BpuEI | CTTGAG | 1 cut(s) | 1067 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1415 |
| BsaHI | GRCGYC | 1 cut(s) | 1395 |
| BsaI | GGTCTC | 1 cut(s) | 1380 |
| BsaJI | CCNNGG | 5 cut(s) | 372, 826, 1023, 1342, 1572 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 205, 279, 377, 599, 706 |
| Bse1I | ACTGG | 3 cut(s) | 284, 776, 1508 |
| Bse3DI | GCAATG | 1 cut(s) | 24 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1415 |
| BseBI | CCWGG | 1 cut(s) | 1343 |
| BseDI | CCNNGG | 5 cut(s) | 372, 826, 1023, 1342, 1572 |
| BseGI | GGATG | 6 cut(s) | 712, 884, 898, 1117, 1453, 1507 |
| BseJI | GATNNNNATC | 1 cut(s) | 1415 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 205, 279, 377, 599, 706 |
| BseMI | GCAATG | 1 cut(s) | 24 |
| BseMII | CTCAG | 4 cut(s) | 615, 666, 966, 1189 |
| BseNI | ACTGG | 3 cut(s) | 284, 776, 1508 |
| BsePI | GCGCGC | 1 cut(s) | 1241 |
| BseRI | GAGGAG | 2 cut(s) | 1064, 1306 |
| BsgI | GTGCAG | 3 cut(s) | 435, 465, 495 |
| Bsh1236I | CGCG | 1 cut(s) | 1243 |
| BshFI | GGCC | 3 cut(s) | 355, 415, 592 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1276 |
| BsiHKCI | CYCGRG | 1 cut(s) | 888 |
| BslFI | GGGAC | 2 cut(s) | 851, 1205 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 205, 279, 377, 599, 706 |
| BsmAI | GTCTC | 3 cut(s) | 48, 1380, 1475 |
| BsmFI | GGGAC | 2 cut(s) | 851, 1205 |
| BsnI | GGCC | 3 cut(s) | 355, 415, 592 |
| Bso31I | GGTCTC | 1 cut(s) | 1380 |
| BsoBI | CYCGRG | 1 cut(s) | 888 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1276 |
| Bsp143I | GATC | 5 cut(s) | 50, 421, 865, 1495, 1518 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1175 |
| Bsp19I | CCATGG | 1 cut(s) | 826 |
| BspACI | CCGC | 3 cut(s) | 1206, 1445, 1493 |
| BspANI | GGCC | 3 cut(s) | 355, 415, 592 |
| BspCNI | CTCAG | 4 cut(s) | 616, 667, 967, 1188 |
| BspFNI | CGCG | 1 cut(s) | 1243 |
| BspHI | TCATGA | 1 cut(s) | 1306 |
| BspLI | GGNNCC | 3 cut(s) | 447, 1193, 1497 |
| BspMAI | CTGCAG | 2 cut(s) | 340, 400 |
| BspMI | ACCTGC | 1 cut(s) | 457 |
| BspPI | GGATC | 3 cut(s) | 416, 1490, 1503 |
| BspTNI | GGTCTC | 1 cut(s) | 1380 |
| BsrDI | GCAATG | 1 cut(s) | 24 |
| BsrI | ACTGG | 3 cut(s) | 284, 776, 1508 |
| BssECI | CCNNGG | 5 cut(s) | 372, 826, 1023, 1342, 1572 |
| BssHII | GCGCGC | 1 cut(s) | 1241 |
| BssMI | GATC | 5 cut(s) | 50, 421, 865, 1495, 1518 |
| BssNI | GRCGYC | 1 cut(s) | 1395 |
| BssT1I | CCWWGG | 3 cut(s) | 372, 826, 1023 |
| Bst2UI | CCWGG | 1 cut(s) | 1343 |
| Bst4CI | ACNGT | 1 cut(s) | 958 |
| Bst6I | CTCTTC | 3 cut(s) | 284, 314, 1370 |
| BstACI | GRCGYC | 1 cut(s) | 1395 |
| BstC8I | GCNNGC | 5 cut(s) | 480, 510, 972, 1239, 1243 |
| BstDEI | CTNAG | 6 cut(s) | 203, 560, 624, 675, 975, 1175 |
| BstDSI | CCRYGG | 2 cut(s) | 826, 1572 |
| BstF5I | GGATG | 6 cut(s) | 712, 884, 898, 1117, 1453, 1507 |
| BstFNI | CGCG | 1 cut(s) | 1243 |
| BstH2I | RGCGCY | 1 cut(s) | 826 |
| BstHHI | GCGC | 3 cut(s) | 825, 1243, 1245 |
| BstKTI | GATC | 5 cut(s) | 53, 424, 868, 1498, 1521 |
| BstMAI | GTCTC | 3 cut(s) | 48, 1380, 1475 |
| BstMBI | GATC | 5 cut(s) | 50, 421, 865, 1495, 1518 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 249, 412 |
| BstNI | CCWGG | 1 cut(s) | 1343 |
| BstNSI | RCATGY | 2 cut(s) | 224, 647 |
| BstSCI | CCNGG | 1 cut(s) | 1341 |
| BstSFI | CTRYAG | 4 cut(s) | 336, 396, 471, 531 |
| BstUI | CGCG | 1 cut(s) | 1243 |
| BstV2I | GAAGAC | 1 cut(s) | 1460 |
| BstX2I | RGATCY | 2 cut(s) | 421, 1495 |
| BstYI | RGATCY | 2 cut(s) | 421, 1495 |
| BsuI | GTATCC | 1 cut(s) | 1015 |
| BsuRI | GGCC | 3 cut(s) | 355, 415, 592 |
| BtgI | CCRYGG | 2 cut(s) | 826, 1572 |
| BtgZI | GCGATG | 1 cut(s) | 27 |
| BtsCI | GGATG | 6 cut(s) | 712, 884, 898, 1117, 1453, 1507 |
| BtsIMutI | CAGTG | 1 cut(s) | 277 |
| BveI | ACCTGC | 1 cut(s) | 457 |
| Cac8I | GCNNGC | 5 cut(s) | 480, 510, 972, 1239, 1243 |
| CciI | TCATGA | 1 cut(s) | 1306 |
| CfoI | GCGC | 3 cut(s) | 825, 1243, 1245 |
| Cfr13I | GGNCC | 3 cut(s) | 383, 413, 1192 |
| Csp6I | GTAC | 1 cut(s) | 88 |
| CviAII | CATG | 6 cut(s) | 176, 221, 644, 827, 1196, 1307 |
| CviQI | GTAC | 1 cut(s) | 88 |
| DdeI | CTNAG | 6 cut(s) | 203, 560, 624, 675, 975, 1175 |
| DpnI | GATC | 5 cut(s) | 52, 423, 867, 1497, 1520 |
| DpnII | GATC | 5 cut(s) | 50, 421, 865, 1495, 1518 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1394 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1394 |
| Eam1104I | CTCTTC | 3 cut(s) | 284, 314, 1370 |
| EarI | CTCTTC | 3 cut(s) | 284, 314, 1370 |
| Eco130I | CCWWGG | 3 cut(s) | 372, 826, 1023 |
| Eco31I | GGTCTC | 1 cut(s) | 1380 |
| Eco47I | GGWCC | 2 cut(s) | 383, 1192 |
| Eco88I | CYCGRG | 1 cut(s) | 888 |
| EcoO109I | RGGNCCY | 2 cut(s) | 383, 413 |
| EcoRI | GAATTC | 1 cut(s) | 1036 |
| EcoRII | CCWGG | 1 cut(s) | 1341 |
| EcoT14I | CCWWGG | 3 cut(s) | 372, 826, 1023 |
| ErhI | CCWWGG | 3 cut(s) | 372, 826, 1023 |
| FaeI | CATG | 6 cut(s) | 179, 224, 647, 830, 1199, 1310 |
| FaqI | GGGAC | 2 cut(s) | 851, 1205 |
| FatI | CATG | 6 cut(s) | 175, 220, 643, 826, 1195, 1306 |
| Fnu4HI | GCNGC | 1 cut(s) | 1206 |
| FokI | GGATG | 6 cut(s) | 699, 891, 905, 1124, 1460, 1494 |
| Fsp4HI | GCNGC | 1 cut(s) | 1206 |
| FspBI | CTAG | 3 cut(s) | 357, 407, 417 |
| GlaI | GCGC | 3 cut(s) | 824, 1242, 1244 |
| GluI | GCNGC | 1 cut(s) | 1206 |
| HaeII | RGCGCY | 1 cut(s) | 826 |
| HaeIII | GGCC | 3 cut(s) | 355, 415, 592 |
| HhaI | GCGC | 3 cut(s) | 825, 1243, 1245 |
| Hin1I | GRCGYC | 1 cut(s) | 1395 |
| Hin1II | CATG | 6 cut(s) | 179, 224, 647, 830, 1199, 1310 |
| Hin6I | GCGC | 3 cut(s) | 823, 1241, 1243 |
| HinP1I | GCGC | 3 cut(s) | 823, 1241, 1243 |
| HincII | GTYRAC | 1 cut(s) | 681 |
| HindII | GTYRAC | 1 cut(s) | 681 |
| HindIII | AAGCTT | 1 cut(s) | 998 |
| HinfI | GANTC | 7 cut(s) | 149, 322, 332, 524, 536, 554, 1331 |
| Hpy166II | GTNNAC | 1 cut(s) | 681 |
| Hpy188I | TCNGA | 6 cut(s) | 79, 148, 461, 849, 1400, 1410 |
| Hpy188III | TCNNGA | 7 cut(s) | 216, 890, 909, 1046, 1307, 1420, 1516 |
| Hpy8I | GTNNAC | 1 cut(s) | 681 |
| HpyAV | CCTTC | 4 cut(s) | 24, 404, 770, 1529 |
| HpyCH4III | ACNGT | 1 cut(s) | 958 |
| HpyCH4IV | ACGT | 1 cut(s) | 1395 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 249, 412 |
| HpyF3I | CTNAG | 6 cut(s) | 203, 560, 624, 675, 975, 1175 |
| HpySE526I | ACGT | 1 cut(s) | 1395 |
| Hsp92I | GRCGYC | 1 cut(s) | 1395 |
| Hsp92II | CATG | 6 cut(s) | 179, 224, 647, 830, 1199, 1310 |
| HspAI | GCGC | 3 cut(s) | 823, 1241, 1243 |
| Kzo9I | GATC | 5 cut(s) | 50, 421, 865, 1495, 1518 |
| LmnI | GCTCC | 2 cut(s) | 208, 433 |
| LweI | GCATC | 4 cut(s) | 4, 1044, 1102, 1516 |
| MaeI | CTAG | 3 cut(s) | 357, 407, 417 |
| MaeII | ACGT | 1 cut(s) | 1395 |
| MaeIII | GTNAC | 1 cut(s) | 734 |
| MalI | GATC | 5 cut(s) | 52, 423, 867, 1497, 1520 |
| MboI | GATC | 5 cut(s) | 50, 421, 865, 1495, 1518 |
| MboII | GAAGA | 6 cut(s) | 71, 219, 301, 331, 1387, 1465 |
| MfeI | CAATTG | 1 cut(s) | 750 |
| MflI | RGATCY | 2 cut(s) | 421, 1495 |
| MhlI | GDGCHC | 1 cut(s) | 1276 |
| MlyI | GAGTC | 1 cut(s) | 331 |
| MmeI | TCCRAC | 1 cut(s) | 1197 |
| MseI | TTAA | 8 cut(s) | 116, 618, 696, 1014, 1088, 1122, 1187, 1545 |
| MspR9I | CCNGG | 1 cut(s) | 1343 |
| MunI | CAATTG | 1 cut(s) | 750 |
| MvaI | CCWGG | 1 cut(s) | 1343 |
| MvnI | CGCG | 1 cut(s) | 1243 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 249, 412 |
| NcoI | CCATGG | 1 cut(s) | 826 |
| NdeII | GATC | 5 cut(s) | 50, 421, 865, 1495, 1518 |
| NlaIII | CATG | 6 cut(s) | 179, 224, 647, 830, 1199, 1310 |
| NlaIV | GGNNCC | 3 cut(s) | 447, 1193, 1497 |
| NmuCI | GTSAC | 1 cut(s) | 734 |
| NspI | RCATGY | 2 cut(s) | 224, 647 |
| PagI | TCATGA | 1 cut(s) | 1306 |
| PauI | GCGCGC | 1 cut(s) | 1241 |
| PciI | ACATGT | 1 cut(s) | 643 |
| PfeI | GAWTC | 6 cut(s) | 149, 332, 524, 536, 554, 1331 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 279 |
| PkrI | GCNGC | 1 cut(s) | 1207 |
| PleI | GAGTC | 1 cut(s) | 330 |
| PpsI | GAGTC | 1 cut(s) | 330 |
| PpuMI | RGGWCCY | 1 cut(s) | 383 |
| PscI | ACATGT | 1 cut(s) | 643 |
| PsiI | TTATAA | 2 cut(s) | 108, 132 |
| Psp5II | RGGWCCY | 1 cut(s) | 383 |
| Psp6I | CCWGG | 1 cut(s) | 1341 |
| PspGI | CCWGG | 1 cut(s) | 1341 |
| PspN4I | GGNNCC | 3 cut(s) | 447, 1193, 1497 |
| PspPI | GGNCC | 3 cut(s) | 383, 413, 1192 |
| PspPPI | RGGWCCY | 1 cut(s) | 383 |
| PstI | CTGCAG | 2 cut(s) | 340, 400 |
| PsuI | RGATCY | 2 cut(s) | 421, 1495 |
| PteI | GCGCGC | 1 cut(s) | 1241 |
| RsaI | GTAC | 1 cut(s) | 89 |
| RsaNI | GTAC | 1 cut(s) | 88 |
| SaqAI | TTAA | 8 cut(s) | 116, 618, 696, 1014, 1088, 1122, 1187, 1545 |
| SatI | GCNGC | 1 cut(s) | 1206 |
| Sau3AI | GATC | 5 cut(s) | 50, 421, 865, 1495, 1518 |
| Sau96I | GGNCC | 3 cut(s) | 383, 413, 1192 |
| ScaI | AGTACT | 1 cut(s) | 89 |
| SchI | GAGTC | 1 cut(s) | 331 |
| ScrFI | CCNGG | 1 cut(s) | 1343 |
| SduI | GDGCHC | 1 cut(s) | 1276 |
| SfaNI | GCATC | 4 cut(s) | 4, 1044, 1102, 1516 |
| SfcI | CTRYAG | 4 cut(s) | 336, 396, 471, 531 |
| SinI | GGWCC | 2 cut(s) | 383, 1192 |
| SmlI | CTYRAG | 1 cut(s) | 1046 |
| SmoI | CTYRAG | 1 cut(s) | 1046 |
| SsiI | CCGC | 3 cut(s) | 1206, 1445, 1493 |
| SspI | AATATT | 1 cut(s) | 1185 |
| SspMI | CTAG | 3 cut(s) | 357, 407, 417 |
| StyD4I | CCNGG | 1 cut(s) | 1341 |
| StyI | CCWWGG | 3 cut(s) | 372, 826, 1023 |
| TaaI | ACNGT | 1 cut(s) | 958 |
| TaiI | ACGT | 1 cut(s) | 1398 |
| TatI | WGTACW | 1 cut(s) | 87 |
| TauI | GCSGC | 1 cut(s) | 1208 |
| TfiI | GAWTC | 6 cut(s) | 149, 332, 524, 536, 554, 1331 |
| Tru1I | TTAA | 8 cut(s) | 116, 618, 696, 1014, 1088, 1122, 1187, 1545 |
| Tru9I | TTAA | 8 cut(s) | 116, 618, 696, 1014, 1088, 1122, 1187, 1545 |
| TscAI | CASTG | 1 cut(s) | 284 |
| TseFI | GTSAC | 1 cut(s) | 734 |
| Tsp45I | GTSAC | 1 cut(s) | 734 |
| TspDTI | ATGAA | 4 cut(s) | 35, 282, 683, 701 |
| TspGWI | ACGGA | 2 cut(s) | 156, 705 |
| TspRI | CASTG | 1 cut(s) | 284 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 279 |
| VpaK11BI | GGWCC | 2 cut(s) | 383, 1192 |
| XapI | RAATTY | 4 cut(s) | 142, 724, 758, 1036 |
| XceI | RCATGY | 2 cut(s) | 224, 647 |
| XspI | CTAG | 3 cut(s) | 357, 407, 417 |
| ZraI | GACGTC | 1 cut(s) | 1396 |
| ZrmI | AGTACT | 1 cut(s) | 89 |