XH domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13790 AT1G13790 |
| fragaria_vesca | FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 FvH4_3g36250 |
| malus_domestica | MD00G1012600.v1.1 |
| prunus_persica | Prupe.6G075800_v2.0.a1 |
| pyrus_communis | pycom11g08830 |
| rosa_chinensis | RchiOBHm_Chr5g0065061 |
| rosa_laevigata | RLG00000035749 |
| rosa_multiflora | Rmu_sc0029223.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00016260 |
| rosa_rugosa | Rorug05G0367300 Rorug05G0367400 |
| rosa_samantha | Rh5AG426000 Rh5BG441100 Rh5CG463700 Rh5DG453800 |
| rosa_wichuraiana | Rw5G040010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 474, 3879 |
| AarI | CACCTGC | 1 cut(s) | 2807 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2117 |
| AatII | GACGTC | 1 cut(s) | 2121 |
| Acc36I | ACCTGC | 3 cut(s) | 823, 2294, 2807 |
| Acc65I | GGTACC | 1 cut(s) | 380 |
| AccB1I | GGYRCC | 1 cut(s) | 380 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 645 |
| AccBSI | CCGCTC | 2 cut(s) | 316, 1996 |
| AccII | CGCG | 1 cut(s) | 3261 |
| AciI | CCGC | 6 cut(s) | 316, 1572, 1742, 1996, 2168, 2216 |
| AclWI | GGATC | 5 cut(s) | 782, 2213, 2226, 3366, 3387 |
| AcoI | YGGCCR | 1 cut(s) | 3474 |
| AcsI | RAATTY | 6 cut(s) | 508, 1090, 1124, 1402, 3297, 3438 |
| AcuI | CTGAAG | 5 cut(s) | 2442, 2718, 2786, 3026, 3852 |
| AcvI | CACGTG | 1 cut(s) | 14 |
| AcyI | GRCGYC | 2 cut(s) | 69, 2118 |
| AfaI | GTAC | 4 cut(s) | 187, 382, 455, 3550 |
| AfeI | AGCGCT | 1 cut(s) | 1980 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 571, 645, 743, 965, 1072 |
| AflII | CTTAAG | 2 cut(s) | 2717, 2969 |
| AflIII | ACRYGT | 2 cut(s) | 11, 1009 |
| AjnI | CCWGG | 4 cut(s) | 1389, 2064, 2337, 3678 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 311, 343 |
| Alw21I | GWGCWC | 2 cut(s) | 2495, 3333 |
| Alw26I | GTCTC | 7 cut(s) | 12, 414, 2103, 2198, 2553, 2601, 3942 |
| AlwI | GGATC | 5 cut(s) | 782, 2213, 2226, 3366, 3387 |
| Ama87I | CYCGRG | 2 cut(s) | 1254, 3939 |
| Aor51HI | AGCGCT | 1 cut(s) | 1980 |
| AoxI | GGCC | 5 cut(s) | 272, 779, 956, 2661, 3474 |
| ApeKI | GCWGC | 6 cut(s) | 2482, 3016, 3256, 3525, 3683, 3686 |
| ApoI | RAATTY | 6 cut(s) | 508, 1090, 1124, 1402, 3297, 3438 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2533, 2565, 3103, 3135 |
| AseI | ATTAAT | 1 cut(s) | 3503 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1968 |
| Asp718I | GGTACC | 1 cut(s) | 380 |
| AspLEI | GCGC | 6 cut(s) | 1191, 1611, 1981, 2980, 3220, 3261 |
| AspS9I | GGNCC | 3 cut(s) | 749, 779, 1558 |
| AsuHPI | GGTGA | 6 cut(s) | 133, 211, 2336, 2831, 3071, 3446 |
| AvaI | CYCGRG | 2 cut(s) | 1254, 3939 |
| AvaII | GGWCC | 2 cut(s) | 749, 1558 |
| BaeGI | GKGCMC | 1 cut(s) | 1642 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 364, 397, 3065, 3098 |
| BalI | TGGCCA | 1 cut(s) | 3476 |
| BamHI | GGATCC | 1 cut(s) | 2218 |
| BanI | GGYRCC | 1 cut(s) | 380 |
| BanII | GRGCYC | 2 cut(s) | 2495, 3333 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1953, 1985 |
| BauI | CACGAG | 3 cut(s) | 2643, 2864, 3104 |
| BbrPI | CACGTG | 1 cut(s) | 14 |
| BbsI | GAAGAC | 1 cut(s) | 2183 |
| Bbv12I | GWGCWC | 2 cut(s) | 2495, 3333 |
| BbvCI | CCTCAGC | 1 cut(s) | 1341 |
| BbvI | GCAGC | 6 cut(s) | 2469, 3028, 3268, 3537, 3695, 3698 |
| BccI | CCATC | 9 cut(s) | 830, 958, 1239, 1677, 2353, 2429, 2658, 3561, 3723 |
| BceAI | ACGGC | 3 cut(s) | 82, 207, 1596 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 2006, 2040, 2389, 2423, 2479, 2513, 3527, 3561 |
| BciT130I | CCWGG | 4 cut(s) | 1391, 2066, 2339, 3680 |
| BciVI | GTATCC | 1 cut(s) | 1381 |
| BclI | TGATCA | 3 cut(s) | 52, 217, 1986 |
| BcoDI | GTCTC | 7 cut(s) | 12, 414, 2103, 2198, 2553, 2601, 3942 |
| BfaI | CTAG | 7 cut(s) | 723, 773, 783, 927, 2036, 2834, 3747 |
| BfmI | CTRYAG | 8 cut(s) | 702, 762, 837, 897, 1959, 2398, 2759, 3536 |
| BfoI | RGCGCY | 5 cut(s) | 1192, 1612, 1982, 2981, 3221 |
| BfrI | CTTAAG | 2 cut(s) | 2717, 2969 |
| BfuAI | ACCTGC | 3 cut(s) | 823, 2294, 2807 |
| BfuI | GTATCC | 1 cut(s) | 1381 |
| BglII | AGATCT | 2 cut(s) | 2755, 3247 |
| BisI | GCNGC | 7 cut(s) | 1572, 2483, 3017, 3257, 3526, 3684, 3687 |
| BlpI | GCTNAGC | 1 cut(s) | 1541 |
| BlsI | GCNGC | 7 cut(s) | 1573, 2484, 3018, 3258, 3527, 3685, 3688 |
| BmcAI | AGTACT | 1 cut(s) | 455 |
| Bme1390I | CCNGG | 4 cut(s) | 1391, 2066, 2339, 3680 |
| Bme18I | GGWCC | 2 cut(s) | 749, 1558 |
| BmeT110I | CYCGRG | 2 cut(s) | 1254, 3939 |
| BmgT120I | GGNCC | 3 cut(s) | 749, 779, 1558 |
| BmiI | GGNNCC | 5 cut(s) | 173, 382, 813, 1559, 2220 |
| BmrFI | CCNGG | 4 cut(s) | 1391, 2066, 2339, 3680 |
| BmrI | ACTGGG | 4 cut(s) | 655, 1147, 2376, 3879 |
| BmsI | GCATC | 5 cut(s) | 1410, 1468, 1885, 2239, 3742 |
| BmuI | ACTGGG | 4 cut(s) | 655, 1147, 2376, 3879 |
| BpiI | GAAGAC | 1 cut(s) | 2183 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2177, 2209, 2863, 2895, 3380, 3412 |
| BpmI | CTGGAG | 4 cut(s) | 1412, 1844, 1850, 3317 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1341 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1541 |
| BsaAI | YACGTR | 1 cut(s) | 14 |
| BsaBI | GATNNNNATC | 4 cut(s) | 2138, 3378, 3571, 3879 |
| BsaHI | GRCGYC | 2 cut(s) | 69, 2118 |
| BsaI | GGTCTC | 1 cut(s) | 2103 |
| BsaJI | CCNNGG | 5 cut(s) | 64, 738, 1192, 1389, 2065 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 571, 645, 743, 965, 1072 |
| Bse8I | GATNNNNATC | 4 cut(s) | 2138, 3378, 3571, 3879 |
| BseBI | CCWGG | 4 cut(s) | 1391, 2066, 2339, 3680 |
| BseDI | CCNNGG | 5 cut(s) | 64, 738, 1192, 1389, 2065 |
| BseJI | GATNNNNATC | 4 cut(s) | 2138, 3378, 3571, 3879 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 571, 645, 743, 965, 1072 |
| BseMII | CTCAG | 6 cut(s) | 981, 1332, 1555, 2894, 3402, 3411 |
| BseRI | GAGGAG | 5 cut(s) | 1430, 1672, 1949, 3341, 3404 |
| BseSI | GKGCMC | 1 cut(s) | 1642 |
| BseXI | GCAGC | 6 cut(s) | 2469, 3028, 3268, 3537, 3695, 3698 |
| BsgI | GTGCAG | 4 cut(s) | 801, 831, 861, 2036 |
| Bsh1236I | CGCG | 1 cut(s) | 3261 |
| BshFI | GGCC | 5 cut(s) | 274, 781, 958, 2663, 3476 |
| BshNI | GGYRCC | 1 cut(s) | 380 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2495, 3333 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1254, 3939 |
| BsiSI | CCGG | 4 cut(s) | 84, 129, 228, 244 |
| BsiWI | CGTACG | 1 cut(s) | 3548 |
| BslFI | GGGAC | 2 cut(s) | 1217, 1571 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 571, 645, 743, 965, 1072 |
| BsmAI | GTCTC | 7 cut(s) | 12, 414, 2103, 2198, 2553, 2601, 3942 |
| BsmFI | GGGAC | 2 cut(s) | 1217, 1571 |
| BsmI | GAATGC | 1 cut(s) | 1693 |
| BsnI | GGCC | 5 cut(s) | 274, 781, 958, 2663, 3476 |
| Bso31I | GGTCTC | 1 cut(s) | 2103 |
| BsoBI | CYCGRG | 2 cut(s) | 1254, 3939 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1642, 2495, 3333 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1541 |
| Bsp19I | CCATGG | 1 cut(s) | 1192 |
| BspACI | CCGC | 6 cut(s) | 316, 1572, 1742, 1996, 2168, 2216 |
| BspANI | GGCC | 5 cut(s) | 274, 781, 958, 2663, 3476 |
| BspCNI | CTCAG | 6 cut(s) | 982, 1333, 1554, 2893, 3403, 3410 |
| BspFNI | CGCG | 1 cut(s) | 3261 |
| BspHI | TCATGA | 2 cut(s) | 1672, 3918 |
| BspLI | GGNNCC | 5 cut(s) | 173, 382, 813, 1559, 2220 |
| BspMAI | CTGCAG | 5 cut(s) | 706, 766, 2402, 2763, 3540 |
| BspMI | ACCTGC | 3 cut(s) | 823, 2294, 2807 |
| BspPI | GGATC | 5 cut(s) | 782, 2213, 2226, 3366, 3387 |
| BspQI | GCTCTTC | 1 cut(s) | 3462 |
| BspT107I | GGYRCC | 1 cut(s) | 380 |
| BspTI | CTTAAG | 2 cut(s) | 2717, 2969 |
| BspTNI | GGTCTC | 1 cut(s) | 2103 |
| BsrBI | CCGCTC | 2 cut(s) | 316, 1996 |
| BssECI | CCNNGG | 5 cut(s) | 64, 738, 1192, 1389, 2065 |
| BssNI | GRCGYC | 2 cut(s) | 69, 2118 |
| BssSI | CACGAG | 3 cut(s) | 2643, 2864, 3104 |
| BssT1I | CCWWGG | 2 cut(s) | 738, 1192 |
| Bst2BI | CACGAG | 3 cut(s) | 2643, 2864, 3104 |
| Bst2UI | CCWGG | 4 cut(s) | 1391, 2066, 2339, 3680 |
| Bst4CI | ACNGT | 4 cut(s) | 307, 1324, 1737, 3078 |
| Bst6I | CTCTTC | 7 cut(s) | 650, 2093, 2921, 3420, 3462, 3900, 3917 |
| BstACI | GRCGYC | 2 cut(s) | 69, 2118 |
| BstAFI | CTTAAG | 2 cut(s) | 2717, 2969 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3584 |
| BstBAI | YACGTR | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 7 cut(s) | 241, 846, 876, 1338, 2026, 3474, 3643 |
| BstDEI | CTNAG | 9 cut(s) | 569, 990, 1341, 1541, 2537, 2786, 2880, 3397, 3411 |
| BstDSI | CCRYGG | 2 cut(s) | 64, 1192 |
| BstFNI | CGCG | 1 cut(s) | 3261 |
| BstH2I | RGCGCY | 5 cut(s) | 1192, 1612, 1982, 2981, 3221 |
| BstHHI | GCGC | 6 cut(s) | 1191, 1611, 1981, 2980, 3220, 3261 |
| BstMAI | GTCTC | 7 cut(s) | 12, 414, 2103, 2198, 2553, 2601, 3942 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 100, 322, 615, 778, 1964, 2451, 2767, 3584 |
| BstNI | CCWGG | 4 cut(s) | 1391, 2066, 2339, 3680 |
| BstNSI | RCATGY | 3 cut(s) | 590, 1013, 3645 |
| BstSCI | CCNGG | 4 cut(s) | 1389, 2064, 2337, 3678 |
| BstSFI | CTRYAG | 8 cut(s) | 702, 762, 837, 897, 1959, 2398, 2759, 3536 |
| BstSLI | GKGCMC | 1 cut(s) | 1642 |
| BstUI | CGCG | 1 cut(s) | 3261 |
| BstV1I | GCAGC | 6 cut(s) | 2469, 3028, 3268, 3537, 3695, 3698 |
| BstV2I | GAAGAC | 1 cut(s) | 2183 |
| BstX2I | RGATCY | 4 cut(s) | 787, 2218, 2755, 3247 |
| BstYI | RGATCY | 4 cut(s) | 787, 2218, 2755, 3247 |
| BsuI | GTATCC | 1 cut(s) | 1381 |
| BsuRI | GGCC | 5 cut(s) | 274, 781, 958, 2663, 3476 |
| BtgI | CCRYGG | 2 cut(s) | 64, 1192 |
| BtsI | GCAGTG | 2 cut(s) | 2349, 2395 |
| BveI | ACCTGC | 3 cut(s) | 823, 2294, 2807 |
| Cac8I | GCNNGC | 7 cut(s) | 241, 846, 876, 1338, 2026, 3474, 3643 |
| CciI | TCATGA | 2 cut(s) | 1672, 3918 |
| CfoI | GCGC | 6 cut(s) | 1191, 1611, 1981, 2980, 3220, 3261 |
| Cfr13I | GGNCC | 3 cut(s) | 749, 779, 1558 |
| CseI | GACGC | 1 cut(s) | 58 |
| Csp6I | GTAC | 4 cut(s) | 186, 381, 454, 3549 |
| CviQI | GTAC | 4 cut(s) | 186, 381, 454, 3549 |
| DdeI | CTNAG | 9 cut(s) | 569, 990, 1341, 1541, 2537, 2786, 2880, 3397, 3411 |
| DraI | TTTAAA | 3 cut(s) | 1857, 2691, 3306 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2117 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2117 |
| EaeI | YGGCCR | 1 cut(s) | 3474 |
| Eam1104I | CTCTTC | 7 cut(s) | 650, 2093, 2921, 3420, 3462, 3900, 3917 |
| EarI | CTCTTC | 7 cut(s) | 650, 2093, 2921, 3420, 3462, 3900, 3917 |
| EciI | GGCGGA | 1 cut(s) | 1757 |
| Ecl136II | GAGCTC | 2 cut(s) | 2493, 3331 |
| Eco130I | CCWWGG | 2 cut(s) | 738, 1192 |
| Eco147I | AGGCCT | 2 cut(s) | 274, 2663 |
| Eco24I | GRGCYC | 2 cut(s) | 2495, 3333 |
| Eco31I | GGTCTC | 1 cut(s) | 2103 |
| Eco32I | GATATC | 3 cut(s) | 34, 2580, 2620 |
| Eco47I | GGWCC | 2 cut(s) | 749, 1558 |
| Eco47III | AGCGCT | 1 cut(s) | 1980 |
| Eco53kI | GAGCTC | 2 cut(s) | 2493, 3331 |
| Eco57I | CTGAAG | 5 cut(s) | 2442, 2718, 2786, 3026, 3852 |
| Eco72I | CACGTG | 1 cut(s) | 14 |
| Eco88I | CYCGRG | 2 cut(s) | 1254, 3939 |
| EcoICRI | GAGCTC | 2 cut(s) | 2493, 3331 |
| EcoO109I | RGGNCCY | 2 cut(s) | 749, 779 |
| EcoRI | GAATTC | 1 cut(s) | 1402 |
| EcoRII | CCWGG | 4 cut(s) | 1389, 2064, 2337, 3678 |
| EcoRV | GATATC | 3 cut(s) | 34, 2580, 2620 |
| EcoT14I | CCWWGG | 2 cut(s) | 738, 1192 |
| EcoT38I | GRGCYC | 2 cut(s) | 2495, 3333 |
| ErhI | CCWWGG | 2 cut(s) | 738, 1192 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2651, 2683, 3571, 3603 |
| FaqI | GGGAC | 2 cut(s) | 1217, 1571 |
| FbaI | TGATCA | 3 cut(s) | 52, 217, 1986 |
| Fnu4HI | GCNGC | 7 cut(s) | 1572, 2483, 3017, 3257, 3526, 3684, 3687 |
| FriOI | GRGCYC | 2 cut(s) | 2495, 3333 |
| Fsp4HI | GCNGC | 7 cut(s) | 1572, 2483, 3017, 3257, 3526, 3684, 3687 |
| FspBI | CTAG | 7 cut(s) | 723, 773, 783, 927, 2036, 2834, 3747 |
| GlaI | GCGC | 6 cut(s) | 1190, 1610, 1980, 2979, 3219, 3260 |
| GluI | GCNGC | 7 cut(s) | 1572, 2483, 3017, 3257, 3526, 3684, 3687 |
| GsuI | CTGGAG | 4 cut(s) | 1412, 1844, 1850, 3317 |
| HaeII | RGCGCY | 5 cut(s) | 1192, 1612, 1982, 2981, 3221 |
| HaeIII | GGCC | 5 cut(s) | 274, 781, 958, 2663, 3476 |
| HapII | CCGG | 4 cut(s) | 84, 129, 228, 244 |
| HgaI | GACGC | 1 cut(s) | 58 |
| HhaI | GCGC | 6 cut(s) | 1191, 1611, 1981, 2980, 3220, 3261 |
| Hin1I | GRCGYC | 2 cut(s) | 69, 2118 |
| Hin6I | GCGC | 6 cut(s) | 1189, 1609, 1979, 2978, 3218, 3259 |
| HinP1I | GCGC | 6 cut(s) | 1189, 1609, 1979, 2978, 3218, 3259 |
| HincII | GTYRAC | 2 cut(s) | 1047, 3852 |
| HindII | GTYRAC | 2 cut(s) | 1047, 3852 |
| HindIII | AAGCTT | 6 cut(s) | 1364, 1491, 2726, 2768, 2903, 3143 |
| HpaII | CCGG | 4 cut(s) | 84, 129, 228, 244 |
| HphI | GGTGA | 6 cut(s) | 133, 211, 2336, 2831, 3071, 3446 |
| Hpy166II | GTNNAC | 7 cut(s) | 1047, 2534, 2783, 2822, 3023, 3062, 3852 |
| Hpy8I | GTNNAC | 7 cut(s) | 1047, 2534, 2783, 2822, 3023, 3062, 3852 |
| Hpy99I | CGWCG | 3 cut(s) | 74, 180, 193 |
| HpyCH4III | ACNGT | 4 cut(s) | 307, 1324, 1737, 3078 |
| HpyCH4IV | ACGT | 3 cut(s) | 13, 375, 2118 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 100, 322, 615, 778, 1964, 2451, 2767, 3584 |
| HpyF3I | CTNAG | 9 cut(s) | 569, 990, 1341, 1541, 2537, 2786, 2880, 3397, 3411 |
| HpySE526I | ACGT | 3 cut(s) | 13, 375, 2118 |
| Hsp92I | GRCGYC | 2 cut(s) | 69, 2118 |
| HspAI | GCGC | 6 cut(s) | 1189, 1609, 1979, 2978, 3218, 3259 |
| KpnI | GGTACC | 1 cut(s) | 384 |
| Ksp22I | TGATCA | 3 cut(s) | 52, 217, 1986 |
| LguI | GCTCTTC | 1 cut(s) | 3462 |
| Lsp1109I | GCAGC | 6 cut(s) | 2469, 3028, 3268, 3537, 3695, 3698 |
| LweI | GCATC | 5 cut(s) | 1410, 1468, 1885, 2239, 3742 |
| MaeI | CTAG | 7 cut(s) | 723, 773, 783, 927, 2036, 2834, 3747 |
| MaeII | ACGT | 3 cut(s) | 13, 375, 2118 |
| MaeIII | GTNAC | 8 cut(s) | 7, 363, 494, 560, 1100, 1731, 2347, 2645 |
| MbiI | CCGCTC | 2 cut(s) | 316, 1996 |
| MfeI | CAATTG | 2 cut(s) | 1116, 1790 |
| MflI | RGATCY | 4 cut(s) | 787, 2218, 2755, 3247 |
| MhlI | GDGCHC | 3 cut(s) | 1642, 2495, 3333 |
| MlsI | TGGCCA | 1 cut(s) | 3476 |
| MluNI | TGGCCA | 1 cut(s) | 3476 |
| MlyI | GAGTC | 5 cut(s) | 52, 697, 2581, 3389, 3416 |
| MmeI | TCCRAC | 5 cut(s) | 158, 1563, 2389, 2498, 2555 |
| Mox20I | TGGCCA | 1 cut(s) | 3476 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1968 |
| MscI | TGGCCA | 1 cut(s) | 3476 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1875 |
| Msp20I | TGGCCA | 1 cut(s) | 3476 |
| MspCI | CTTAAG | 2 cut(s) | 2717, 2969 |
| MspI | CCGG | 4 cut(s) | 84, 129, 228, 244 |
| MspR9I | CCNGG | 4 cut(s) | 1391, 2066, 2339, 3680 |
| MunI | CAATTG | 2 cut(s) | 1116, 1790 |
| Mva1269I | GAATGC | 1 cut(s) | 1693 |
| MvaI | CCWGG | 4 cut(s) | 1391, 2066, 2339, 3680 |
| MvnI | CGCG | 1 cut(s) | 3261 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 100, 322, 615, 778, 1964, 2451, 2767, 3584 |
| NcoI | CCATGG | 1 cut(s) | 1192 |
| NlaIV | GGNNCC | 5 cut(s) | 173, 382, 813, 1559, 2220 |
| NmeAIII | GCCGAG | 2 cut(s) | 89, 1066 |
| NmuCI | GTSAC | 4 cut(s) | 7, 1100, 2347, 2645 |
| NspI | RCATGY | 3 cut(s) | 590, 1013, 3645 |
| PaeI | GCATGC | 1 cut(s) | 3645 |
| PaeR7I | CTCGAG | 1 cut(s) | 3939 |
| PagI | TCATGA | 2 cut(s) | 1672, 3918 |
| PaqCI | CACCTGC | 1 cut(s) | 2807 |
| PceI | AGGCCT | 2 cut(s) | 274, 2663 |
| PciI | ACATGT | 1 cut(s) | 1009 |
| PciSI | GCTCTTC | 1 cut(s) | 3462 |
| PctI | GAATGC | 1 cut(s) | 1693 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1968 |
| Pfl23II | CGTACG | 1 cut(s) | 3548 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 645 |
| PkrI | GCNGC | 7 cut(s) | 1573, 2484, 3018, 3258, 3527, 3685, 3688 |
| PleI | GAGTC | 5 cut(s) | 52, 696, 2580, 3389, 3415 |
| PmaCI | CACGTG | 1 cut(s) | 14 |
| PmlI | CACGTG | 1 cut(s) | 14 |
| PpsI | GAGTC | 5 cut(s) | 52, 696, 2580, 3389, 3415 |
| Ppu21I | YACGTR | 1 cut(s) | 14 |
| PpuMI | RGGWCCY | 1 cut(s) | 749 |
| PscI | ACATGT | 1 cut(s) | 1009 |
| PshBI | ATTAAT | 1 cut(s) | 3503 |
| PsiI | TTATAA | 2 cut(s) | 474, 3879 |
| Psp124BI | GAGCTC | 2 cut(s) | 2495, 3333 |
| Psp5II | RGGWCCY | 1 cut(s) | 749 |
| Psp6I | CCWGG | 4 cut(s) | 1389, 2064, 2337, 3678 |
| PspCI | CACGTG | 1 cut(s) | 14 |
| PspGI | CCWGG | 4 cut(s) | 1389, 2064, 2337, 3678 |
| PspLI | CGTACG | 1 cut(s) | 3548 |
| PspN4I | GGNNCC | 5 cut(s) | 173, 382, 813, 1559, 2220 |
| PspPI | GGNCC | 3 cut(s) | 749, 779, 1558 |
| PspPPI | RGGWCCY | 1 cut(s) | 749 |
| PstI | CTGCAG | 5 cut(s) | 706, 766, 2402, 2763, 3540 |
| PsuI | RGATCY | 4 cut(s) | 787, 2218, 2755, 3247 |
| RsaI | GTAC | 4 cut(s) | 187, 382, 455, 3550 |
| RsaNI | GTAC | 4 cut(s) | 186, 381, 454, 3549 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1875 |
| SacI | GAGCTC | 2 cut(s) | 2495, 3333 |
| SapI | GCTCTTC | 1 cut(s) | 3462 |
| SatI | GCNGC | 7 cut(s) | 1572, 2483, 3017, 3257, 3526, 3684, 3687 |
| Sau96I | GGNCC | 3 cut(s) | 749, 779, 1558 |
| ScaI | AGTACT | 1 cut(s) | 455 |
| SchI | GAGTC | 5 cut(s) | 52, 697, 2581, 3389, 3416 |
| ScrFI | CCNGG | 4 cut(s) | 1391, 2066, 2339, 3680 |
| SduI | GDGCHC | 3 cut(s) | 1642, 2495, 3333 |
| SfaNI | GCATC | 5 cut(s) | 1410, 1468, 1885, 2239, 3742 |
| SfcI | CTRYAG | 8 cut(s) | 702, 762, 837, 897, 1959, 2398, 2759, 3536 |
| Sfr274I | CTCGAG | 1 cut(s) | 3939 |
| SinI | GGWCC | 2 cut(s) | 749, 1558 |
| SlaI | CTCGAG | 1 cut(s) | 3939 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1875 |
| SphI | GCATGC | 1 cut(s) | 3645 |
| SseBI | AGGCCT | 2 cut(s) | 274, 2663 |
| SsiI | CCGC | 6 cut(s) | 316, 1572, 1742, 1996, 2168, 2216 |
| SspI | AATATT | 2 cut(s) | 1551, 3501 |
| SspMI | CTAG | 7 cut(s) | 723, 773, 783, 927, 2036, 2834, 3747 |
| SstI | GAGCTC | 2 cut(s) | 2495, 3333 |
| StuI | AGGCCT | 2 cut(s) | 274, 2663 |
| StyD4I | CCNGG | 4 cut(s) | 1389, 2064, 2337, 3678 |
| StyI | CCWWGG | 2 cut(s) | 738, 1192 |
| TaaI | ACNGT | 4 cut(s) | 307, 1324, 1737, 3078 |
| TaiI | ACGT | 3 cut(s) | 16, 378, 2121 |
| TaqI | TCGA | 4 cut(s) | 1920, 2489, 3442, 3940 |
| TaqII | GACCGA | 1 cut(s) | 194 |
| TatI | WGTACW | 1 cut(s) | 453 |
| TauI | GCSGC | 1 cut(s) | 1574 |
| TseFI | GTSAC | 4 cut(s) | 7, 1100, 2347, 2645 |
| TseI | GCWGC | 6 cut(s) | 2482, 3016, 3256, 3525, 3683, 3686 |
| Tsp45I | GTSAC | 4 cut(s) | 7, 1100, 2347, 2645 |
| TspGWI | ACGGA | 4 cut(s) | 164, 522, 1071, 3566 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 645 |
| Vha464I | CTTAAG | 2 cut(s) | 2717, 2969 |
| VpaK11BI | GGWCC | 2 cut(s) | 749, 1558 |
| VspI | ATTAAT | 1 cut(s) | 3503 |
| XapI | RAATTY | 6 cut(s) | 508, 1090, 1124, 1402, 3297, 3438 |
| XceI | RCATGY | 3 cut(s) | 590, 1013, 3645 |
| XhoI | CTCGAG | 1 cut(s) | 3939 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1968 |
| XspI | CTAG | 7 cut(s) | 723, 773, 783, 927, 2036, 2834, 3747 |
| ZraI | GACGTC | 1 cut(s) | 2119 |
| ZrmI | AGTACT | 1 cut(s) | 455 |