Prupe.6G105500_v2.0.a1

Kiwellin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0018914
Physical Location & Seq
Forward (+)
7472317 .. 7472691
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G105500.1

Sequence Viewer

Length: 246 bp
ATGGCGTTATACATAAGTGCCAAGCTCACACTCAATGATTTCAGCCAAGGCGTGCCTACTACTGGGAGGAGTGTGGCCGCGAAAGTGGTGGACGAGTGTGATTCTGTAAAAGGATGTGATTTGGAGCATGCGGGTCTCCCTCAGTGTGGGAACAACGTTGTTGATGGCTTTGTAGGTGTGTGGAACACTTTCGGGCTAAACAAAGATCTAGGGGTTGTTAACGTTAGTTGGATCATAGCCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.56

Weight (kDa)

4.62

Isoelectric Point (pI)

30.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018914)

Species Orthologous Gene IDs
prunus_persica Prupe.6G105500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0058291 RchiOBHm_Chr5g0058321
rosa_laevigata RLG00000035210 RLG00000035211
rosa_roxburghii Rroxscaffold_1G00022240 Rroxscaffold_1G00022260
rosa_rugosa Rorug05G0313000
rosa_samantha Rh5BG392100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AciI CCGC 2 cut(s) 78, 131
AclI AACGTT 2 cut(s) 156, 222
AclWI GGATC 1 cut(s) 239
AcoI YGGCCR 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 62, 146
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 239
AoxI GGCC 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 188
BccI CCATC 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 209
BglII AGATCT 1 cut(s) 205
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 146
Bse1I ACTGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 62, 146
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 62, 146
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 205, 231
BspACI CCGC 2 cut(s) 78, 131
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 154
BspFNI CGCG 1 cut(s) 80
BspPI GGATC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 140
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 2 cut(s) 205, 231
BssT1I CCWWGG 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 53, 129
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 119
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 2 cut(s) 208, 234
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 205, 231
BstNSI RCATGY 1 cut(s) 131
BstUI CGCG 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 149
Cac8I GCNNGC 2 cut(s) 53, 129
CviAII CATG 1 cut(s) 128
CviJI RGCY 6 cut(s) 25, 45, 77, 168, 196, 239
CviKI_1 RGCY 6 cut(s) 25, 45, 77, 168, 196, 239
DdeI CTNAG 1 cut(s) 141
DpnI GATC 2 cut(s) 207, 233
DpnII GATC 2 cut(s) 205, 231
EaeI YGGCCR 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 131
FaiI YATR 4 cut(s) 10, 14, 129, 236
FatI CATG 1 cut(s) 127
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 1 cut(s) 131
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 1 cut(s) 101
HpaI GTTAAC 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 91, 220
Hpy8I GTNNAC 2 cut(s) 91, 220
HpyCH4IV ACGT 2 cut(s) 156, 222
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 2 cut(s) 156, 222
Hsp92II CATG 1 cut(s) 131
KspAI GTTAAC 1 cut(s) 220
Kzo9I GATC 2 cut(s) 205, 231
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 1 cut(s) 48
MaeI CTAG 1 cut(s) 209
MaeII ACGT 2 cut(s) 156, 222
MalI GATC 2 cut(s) 207, 233
MboI GATC 2 cut(s) 205, 231
MflI RGATCY 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 60, 150
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 1 cut(s) 219
MvnI CGCG 1 cut(s) 80
NdeII GATC 2 cut(s) 205, 231
NlaIII CATG 1 cut(s) 131
NspI RCATGY 1 cut(s) 131
PaeI GCATGC 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 79
Psp1406I AACGTT 2 cut(s) 156, 222
PsuI RGATCY 1 cut(s) 205
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 205, 231
SetI ASST 4 cut(s) 27, 159, 178, 225
SphI GCATGC 1 cut(s) 131
SsiI CCGC 2 cut(s) 78, 131
SspMI CTAG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 46
TaiI ACGT 2 cut(s) 159, 225
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 149
TspRI CASTG 1 cut(s) 149
XceI RCATGY 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.