RLG00000035211

Kiwellin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018914
Physical Location & Seq
Reverse (-)
62915933 .. 62917421
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035211

Sequence Viewer

Length: 363 bp
ATGATAACAATTACGGCGAGTAATGGGAGGAGTGTGACGGCCAAAGTGGTTGACGAATGTGATTCGCGTGCTGGATGCGACGATGAGCATGGTGGTCAGCCACCGTGTGACAACAATGTTGTTGACGGTTCTGCAGCTGTGTGGAACGCATTGGGGATAGACCAAGCCATTGGGATTGTGGACGCTTTCTTGTTTGCCATGGCAAAAAATTCCGTACATTCAAATTCTCGATCGCCACCAATAATGTCATCCACCAGAGCCAAACTCATGCTCAACGACTTCAGCCAAGGCGGTGAACCATCGGAGTACGATGAGAAGTTCCACAAGAAGAGCGAGCTAAATGCGGCGCTGTCCACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.75

Weight (kDa)

4.79

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 57 1.8e-19 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018914)

Species Orthologous Gene IDs
prunus_persica Prupe.6G105500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0058291 RchiOBHm_Chr5g0058321
rosa_laevigata RLG00000035210 RLG00000035211
rosa_roxburghii Rroxscaffold_1G00022240 Rroxscaffold_1G00022260
rosa_rugosa Rorug05G0313000
rosa_samantha Rh5BG392100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 67
AciI CCGC 2 cut(s) 291, 344
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 2 cut(s) 208, 223
AcuI CTGAAG 1 cut(s) 265
AdeI CACNNNGTG 2 cut(s) 107, 360
AfaI GTAC 2 cut(s) 216, 308
AgsI TTSAA 1 cut(s) 222
AluBI AGCT 2 cut(s) 137, 337
AluI AGCT 2 cut(s) 137, 337
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 2 cut(s) 208, 223
AspLEI GCGC 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 305
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 307
BceAI ACGGC 2 cut(s) 30, 54
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 350
BisI GCNGC 2 cut(s) 135, 345
BlsI GCNGC 2 cut(s) 136, 346
BmsI GCATC 1 cut(s) 65
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BsaJI CCNNGG 2 cut(s) 198, 286
BseDI CCNNGG 2 cut(s) 198, 286
BseGI GGATG 2 cut(s) 80, 248
BseMII CTCAG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 233
BsnI GGCC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 230
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 2 cut(s) 291, 344
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 198, 286
BssMI GATC 1 cut(s) 230
BssT1I CCWWGG 2 cut(s) 198, 286
Bst4CI ACNGT 2 cut(s) 105, 128
Bst6I CTCTTC 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 69, 335
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 80, 248
BstFNI CGCG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 1 cut(s) 233
BstMBI GATC 1 cut(s) 230
BstMCI CGRYCG 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 170
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 80, 248
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 69, 335
CfoI GCGC 1 cut(s) 349
CseI GACGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 215, 307
CviAII CATG 3 cut(s) 89, 199, 268
CviJI RGCY 7 cut(s) 41, 100, 137, 167, 260, 285, 337
CviKI_1 RGCY 7 cut(s) 41, 100, 137, 167, 260, 285, 337
CviQI GTAC 2 cut(s) 215, 307
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
DraIII CACNNNGTG 2 cut(s) 107, 360
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco130I CCWWGG 2 cut(s) 198, 286
Eco57I CTGAAG 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 198, 286
ErhI CCWWGG 2 cut(s) 198, 286
FaeI CATG 3 cut(s) 92, 202, 271
FaiI YATR 3 cut(s) 90, 200, 269
FatI CATG 3 cut(s) 88, 198, 267
Fnu4HI GCNGC 2 cut(s) 135, 345
FokI GGATG 2 cut(s) 87, 235
Fsp4HI GCNGC 2 cut(s) 135, 345
GlaI GCGC 1 cut(s) 348
GluI GCNGC 2 cut(s) 135, 345
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 1 cut(s) 41
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 349
Hin1II CATG 3 cut(s) 92, 202, 271
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HincII GTYRAC 2 cut(s) 52, 124
HindII GTYRAC 2 cut(s) 52, 124
HinfI GANTC 1 cut(s) 62
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 5 cut(s) 52, 124, 181, 296, 354
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 5 cut(s) 52, 124, 181, 296, 354
Hpy99I CGWCG 1 cut(s) 83
HpyCH4III ACNGT 2 cut(s) 105, 128
HpyCH4V TGCA 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 3 cut(s) 92, 202, 271
HspAI GCGC 1 cut(s) 347
Kzo9I GATC 1 cut(s) 230
LguI GCTCTTC 1 cut(s) 323
LpnPI CCDG 2 cut(s) 57, 268
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 34, 107
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 1 cut(s) 340
MluCI AATT 3 cut(s) 9, 208, 223
MnlI CCTC 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 137
MvnI CGCG 1 cut(s) 67
NcoI CCATGG 1 cut(s) 198
NdeII GATC 1 cut(s) 230
NlaIII CATG 3 cut(s) 92, 202, 271
NmuCI GTSAC 2 cut(s) 34, 107
PciSI GCTCTTC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 136, 346
Ple19I CGATCG 1 cut(s) 233
PstI CTGCAG 1 cut(s) 136
PvuI CGATCG 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 216, 308
RsaNI GTAC 2 cut(s) 215, 307
SapI GCTCTTC 1 cut(s) 323
SatI GCNGC 2 cut(s) 135, 345
Sau3AI GATC 1 cut(s) 230
SetI ASST 2 cut(s) 139, 339
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 132
Sse9I AATT 3 cut(s) 9, 208, 223
SsiI CCGC 2 cut(s) 291, 344
StyI CCWWGG 2 cut(s) 198, 286
TaaI ACNGT 2 cut(s) 105, 128
TaqI TCGA 1 cut(s) 229
TasI AATT 3 cut(s) 9, 208, 223
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 1 cut(s) 62
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 2 cut(s) 34, 107
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 2 cut(s) 34, 107
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 1 cut(s) 361
XapI RAATTY 2 cut(s) 208, 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.