Rh5BG392100

Kiwellin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018914
Physical Location & Seq
Reverse (-)
62738415 .. 62752712
14298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG392100.1

Sequence Viewer

Length: 210 bp
ATGATAACAGTTGCGGCAACTAATGGGGCGGGTGTGATGGCTAAAGTGGCGGACGAATGTGATTTGCGTGCTGGAGGTAACGGAGAACATGGCCGTCAGCCGCCGTGCTTGAGCAATATTATTGACGGCTCTGCAGCTGTGTGGAATGCTTTGGGACTTGATCAAGGGGCGAAAGGAAGTGAAGTTGCCGATCAAGTTGATGATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

6.92

Weight (kDa)

4.2

Isoelectric Point (pI)

24.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 57 3.6e-14 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018914)

Species Orthologous Gene IDs
prunus_persica Prupe.6G105500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0058291 RchiOBHm_Chr5g0058321
rosa_laevigata RLG00000035210 RLG00000035211
rosa_roxburghii Rroxscaffold_1G00022240 Rroxscaffold_1G00022260
rosa_rugosa Rorug05G0313000
rosa_samantha Rh5BG392100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 14, 29, 50, 101
AcoI YGGCCR 1 cut(s) 91
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 31
BceAI ACGGC 3 cut(s) 78, 88, 142
BclI TGATCA 1 cut(s) 160
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 3 cut(s) 15, 101, 135
BlsI GCNGC 3 cut(s) 16, 102, 136
BpmI CTGGAG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 1 cut(s) 93
BslFI GGGAC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 160, 190
BspACI CCGC 4 cut(s) 14, 29, 50, 101
BspANI GGCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 136
BssMI GATC 2 cut(s) 160, 190
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 69
BstKTI GATC 2 cut(s) 163, 193
BstMBI GATC 2 cut(s) 160, 190
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 69
CviAII CATG 1 cut(s) 89
CviJI RGCY 5 cut(s) 41, 93, 100, 129, 137
CviKI_1 RGCY 5 cut(s) 41, 93, 100, 129, 137
DpnI GATC 2 cut(s) 162, 192
DpnII GATC 2 cut(s) 160, 190
EaeI YGGCCR 1 cut(s) 91
EciI GGCGGA 1 cut(s) 65
FaeI CATG 1 cut(s) 92
FaiI YATR 1 cut(s) 90
FaqI GGGAC 1 cut(s) 168
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 22
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 15, 101, 135
Fsp4HI GCNGC 3 cut(s) 15, 101, 135
GluI GCNGC 3 cut(s) 15, 101, 135
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 93
Hin1II CATG 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 160, 190
LpnPI CCDG 1 cut(s) 57
Lsp1109I GCAGC 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 162, 192
MboI GATC 2 cut(s) 160, 190
MluCI AATT 1 cut(s) 205
MnlI CCTC 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 2 cut(s) 160, 190
NlaIII CATG 1 cut(s) 92
PctI GAATGC 1 cut(s) 151
PkrI GCNGC 3 cut(s) 16, 102, 136
PstI CTGCAG 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 137
SatI GCNGC 3 cut(s) 15, 101, 135
Sau3AI GATC 2 cut(s) 160, 190
SetI ASST 2 cut(s) 79, 139
SfcI CTRYAG 1 cut(s) 132
SgeI CNNG 9 cut(s) 42, 80, 84, 101, 117, 121, 170, 176, 206
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 1 cut(s) 205
SsiI CCGC 4 cut(s) 14, 29, 50, 101
SspI AATATT 1 cut(s) 118
TaaI ACNGT 1 cut(s) 10
TasI AATT 1 cut(s) 205
TauI GCSGC 2 cut(s) 17, 103
TseI GCWGC 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.