Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Forward (+)

36987703 .. 36990068

Gene Structure 2366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0313000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATAGATGAGCTGGGGATATATTTTCTGCTATATGACCGGGCTGGGTATGGAGAGAGTGATCCAAATCCAAAGCGTTCAGTGAAGAGTGAAGCCCTTGACATCGAAGAACTAGCTGATCAGTTACAGCTTGGATCAAAATTTTATGTGATTGGAGTGTCAATGGGATCATACTCCACCTGGAGTTGCATCAAATACATCCCACATAGGTTAGCTGGTGTGGCTTTTGTAGTCCCAGTTGTGAATTATAGGTGGCCTTCATTTCCAGACAATCTGATAAAGGATGATTACAGAAGAAAACTAGTTCAATCGGCACTCTGGTTTGCAGACTATGCCCCTGGGCTGATGCAATGGTGGGTGACTCAGAAATGGCTCCCTTCAACTTCTGTCATGGAAAGAAACCCGGTGTTCTTCAACACCAGAGACATTGATGTCCTGAAAACAACCCCAGGCTTCCCAATGCTCACTAAGGATAAATTGCGGCAAAGAGGGGTTTTCAATACTCTGCATCTTGACTTTAAAGCAGCTTTCAGCCATTGGGATTTTGATCCAATGGATCTAAGTAATCCATTCCCGCAAAATCAGAGCGCTGTCCACATTTGGCAAGGTTATGAAGATAAGGTTGTGCCATTTCAACTGCAAAGATATATTTCATCGAAACTACCCTGGATTCAGTATCATGAAGTTCCTGATGGTGGGCATTTGATTGTGCATTATGCTGGTTTATGTGAAGCCATTCTCAGGGCACTTTTGCTTGGTGAAGAATCACTTCACTACAAACCTACTATTGCCAAAATTGTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_3 UPF0054

Protein Analysis

268

Amino Acids

30.95

Weight (kDa)

6.44

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	5 - 236	1.9e-06	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	9 - 237	1.1e-09	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	10 - 237	5.2e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
AciI	CCGC	2 cut(s)	481, 575
AclWI	GGATC	5 cut(s)	56, 142, 175, 542, 564
AcsI	RAATTY	1 cut(s)	140
AfeI	AGCGCT	1 cut(s)	589
AfiI	CCNNNNNNNGG	2 cut(s)	695, 741
AgsI	TTSAA	5 cut(s)	308, 381, 415, 499, 635
AhlI	ACTAGT	1 cut(s)	301
AjnI	CCWGG	4 cut(s)	179, 337, 448, 665
AluBI	AGCT	5 cut(s)	13, 116, 130, 215, 527
AluI	AGCT	5 cut(s)	13, 116, 130, 215, 527
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	5 cut(s)	56, 142, 175, 542, 564
Aor51HI	AGCGCT	1 cut(s)	589
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	2 cut(s)	735, 768
AspLEI	GCGC	1 cut(s)	590
AsuC2I	CCSGG	2 cut(s)	41, 404
AsuHPI	GGTGA	2 cut(s)	370, 770
BaeGI	GKGCMC	1 cut(s)	748
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	1 cut(s)	686
BciT130I	CCWGG	4 cut(s)	181, 339, 450, 667
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	2 cut(s)	41, 404
BcoDI	GTCTC	1 cut(s)	417
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	2 cut(s)	113, 302
BfoI	RGCGCY	1 cut(s)	591
BisI	GCNGC	2 cut(s)	482, 525
BlsI	GCNGC	2 cut(s)	483, 526
Bme1390I	CCNGG	6 cut(s)	41, 181, 339, 404, 450, 667
BmiI	GGNNCC	1 cut(s)	374
BmrFI	CCNGG	6 cut(s)	41, 181, 339, 404, 450, 667
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	3 cut(s)	198, 336, 517
BmuI	ACTGGG	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	202
BpuMI	CCSGG	2 cut(s)	41, 404
BsaBI	GATNNNNATC	2 cut(s)	66, 546
BsaJI	CCNNGG	4 cut(s)	337, 338, 448, 665
Bsc4I	CCNNNNNNNGG	2 cut(s)	695, 741
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	356
Bse8I	GATNNNNATC	2 cut(s)	66, 546
BseBI	CCWGG	4 cut(s)	181, 339, 450, 667
BseDI	CCNNGG	4 cut(s)	337, 338, 448, 665
BseGI	GGATG	2 cut(s)	198, 289
BseJI	GATNNNNATC	2 cut(s)	66, 546
BseLI	CCNNNNNNNGG	2 cut(s)	695, 741
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	377, 754
BseNI	ACTGG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	1 cut(s)	536
BseYI	CCCAGC	2 cut(s)	13, 44
BshFI	GGCC	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	40, 404
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	695, 741
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	6 cut(s)	61, 118, 134, 167, 547, 556
BspACI	CCGC	2 cut(s)	481, 575
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	2 cut(s)	376, 753
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	374
BspPI	GGATC	5 cut(s)	56, 142, 175, 542, 564
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	4 cut(s)	337, 338, 448, 665
BssMI	GATC	6 cut(s)	61, 118, 134, 167, 547, 556
Bst2UI	CCWGG	4 cut(s)	181, 339, 450, 667
Bst6I	CTCTTC	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstDEI	CTNAG	4 cut(s)	363, 468, 560, 740
BstF5I	GGATG	2 cut(s)	198, 289
BstH2I	RGCGCY	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	6 cut(s)	64, 121, 137, 170, 550, 559
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	6 cut(s)	61, 118, 134, 167, 547, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 332
BstNI	CCWGG	4 cut(s)	181, 339, 450, 667
BstSCI	CCNGG	6 cut(s)	39, 179, 337, 402, 448, 665
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	1 cut(s)	536
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	198, 289
BtsIMutI	CAGTG	1 cut(s)	87
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	1 cut(s)	590
CviAII	CATG	2 cut(s)	391, 680
DdeI	CTNAG	4 cut(s)	363, 468, 560, 740
DpnI	GATC	6 cut(s)	63, 120, 136, 169, 549, 558
DpnII	GATC	6 cut(s)	61, 118, 134, 167, 547, 556
DraI	TTTAAA	1 cut(s)	520
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco47III	AGCGCT	1 cut(s)	589
EcoRII	CCWGG	4 cut(s)	179, 337, 448, 665
FaeI	CATG	2 cut(s)	394, 683
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	390, 679
FauI	CCCGC	1 cut(s)	582
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	482, 525
FokI	GGATG	2 cut(s)	185, 296
Fsp4HI	GCNGC	2 cut(s)	482, 525
FspBI	CTAG	2 cut(s)	113, 302
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	2 cut(s)	482, 525
GsaI	CCCAGC	2 cut(s)	17, 48
GsuI	CTGGAG	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	2 cut(s)	40, 404
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	2 cut(s)	394, 683
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HinfI	GANTC	3 cut(s)	361, 670, 764
HpaII	CCGG	2 cut(s)	40, 404
HphI	GGTGA	2 cut(s)	370, 770
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	3 cut(s)	276, 366, 585
Hpy188III	TCNNGA	5 cut(s)	266, 436, 512, 680, 689
Hpy8I	GTNNAC	1 cut(s)	595
HpyAV	CCTTC	2 cut(s)	267, 387
HpyCH4V	TGCA	6 cut(s)	189, 326, 349, 508, 640, 712
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 332
HpyF3I	CTNAG	4 cut(s)	363, 468, 560, 740
Hsp92II	CATG	2 cut(s)	394, 683
HspAI	GCGC	1 cut(s)	588
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	6 cut(s)	61, 118, 134, 167, 547, 556
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	3 cut(s)	198, 336, 517
MaeI	CTAG	2 cut(s)	113, 302
MaeIII	GTNAC	2 cut(s)	123, 358
MalI	GATC	6 cut(s)	63, 120, 136, 169, 549, 558
MboI	GATC	6 cut(s)	61, 118, 134, 167, 547, 556
MboII	GAAGA	6 cut(s)	97, 119, 306, 403, 626, 773
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	748
MluCI	AATT	4 cut(s)	140, 244, 476, 795
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	1 cut(s)	482
MroXI	GAANNNNTTC	2 cut(s)	735, 768
MseI	TTAA	1 cut(s)	519
MspI	CCGG	2 cut(s)	40, 404
MspR9I	CCNGG	6 cut(s)	41, 181, 339, 404, 450, 667
MvaI	CCWGG	4 cut(s)	181, 339, 450, 667
MwoI	GCNNNNNNNGC	2 cut(s)	221, 332
NciI	CCSGG	2 cut(s)	41, 404
NdeII	GATC	6 cut(s)	61, 118, 134, 167, 547, 556
NlaIII	CATG	2 cut(s)	394, 683
NlaIV	GGNNCC	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	358
PagI	TCATGA	1 cut(s)	679
PasI	CCCWGGG	1 cut(s)	338
PdmI	GAANNNNTTC	2 cut(s)	735, 768
PfeI	GAWTC	2 cut(s)	670, 764
PkrI	GCNGC	2 cut(s)	483, 526
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Psp6I	CCWGG	4 cut(s)	179, 337, 448, 665
PspFI	CCCAGC	2 cut(s)	13, 44
PspGI	CCWGG	4 cut(s)	179, 337, 448, 665
PspN4I	GGNNCC	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	556
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	2 cut(s)	482, 525
Sau3AI	GATC	6 cut(s)	61, 118, 134, 167, 547, 556
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	6 cut(s)	41, 181, 339, 404, 450, 667
SduI	GDGCHC	1 cut(s)	748
SfaNI	GCATC	3 cut(s)	198, 336, 517
SpeI	ACTAGT	1 cut(s)	301
Sse9I	AATT	4 cut(s)	140, 244, 476, 795
SsiI	CCGC	2 cut(s)	481, 575
SspMI	CTAG	2 cut(s)	113, 302
StyD4I	CCNGG	6 cut(s)	39, 179, 337, 402, 448, 665
TaqI	TCGA	2 cut(s)	105, 656
TasI	AATT	4 cut(s)	140, 244, 476, 795
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	2 cut(s)	670, 764
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	4 cut(s)	249, 627, 642, 696
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	1 cut(s)	140
XmnI	GAANNNNTTC	2 cut(s)	735, 768
XspI	CTAG	2 cut(s)	113, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.