Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Reverse (-)

47658037 .. 47660387

Gene Structure 2351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG321100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTCGAGGTTATGCATGATTGCAAGACTACTGGGAGAAGCAGAGGATTTGGGTTTGTGTCTCACCATTTGGGATCACGAAATTTCGTTGCTTCATGTGTTGCTATTGTTATTCAGTCTCTAGCAGCCAATCTTGGGGTAGTCACAGGAAAGCATTTGGCTGAGCACTGTAGAGCTAAATATCCTAAGAAAACAAACTTCATCCTTTGGGTTCTTGCTGAGATTTCTATAGTTGCATGTGACATTCCTGAAGGAAGGTCTCGCCCAGCTGCTTTAGCGGTGTCTTTCTCATGTTGGTGTGAGGCTTTGAGCTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0008150 GO:0008324 GO:0015075 GO:0015086 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0034755 GO:0042592 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070574 GO:0070838 GO:0071421 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

106

Amino Acids

11.54

Weight (kDa)

8.63

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nramp	PF01566	30 - 84	2e-16	Natural resistance-associated macrophage protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	135
AluBI	AGCT	3 cut(s)	176, 269, 312
AluI	AGCT	3 cut(s)	176, 269, 312
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	3 cut(s)	66, 123, 264
AlwI	GGATC	1 cut(s)	82
ApeKI	GCWGC	2 cut(s)	125, 269
ApoI	RAATTY	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	137, 256
BcoDI	GTCTC	3 cut(s)	66, 123, 264
BfaI	CTAG	2 cut(s)	122, 319
BfmI	CTRYAG	2 cut(s)	169, 228
BisI	GCNGC	2 cut(s)	126, 270
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	2 cut(s)	127, 271
BmrI	ACTGGG	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	153, 210
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	137, 256
BseYI	CCCAGC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	3 cut(s)	66, 123, 264
Bso31I	GGTCTC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	74
Bsp1720I	GCTNAGC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	154, 211
BspPI	GGATC	1 cut(s)	82
BspTNI	GGTCTC	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	170
BstDEI	CTNAG	3 cut(s)	162, 186, 219
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	77
BstMAI	GTCTC	3 cut(s)	66, 123, 264
BstMBI	GATC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	240
BstSFI	CTRYAG	2 cut(s)	169, 228
BstV1I	GCAGC	2 cut(s)	137, 256
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	166
CviAII	CATG	4 cut(s)	17, 96, 237, 291
CviJI	RGCY	6 cut(s)	128, 161, 176, 269, 305, 312
CviKI_1	RGCY	6 cut(s)	128, 161, 176, 269, 305, 312
DdeI	CTNAG	3 cut(s)	162, 186, 219
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	18
FaeI	CATG	4 cut(s)	20, 99, 240, 294
FaiI	YATR	6 cut(s)	14, 18, 97, 230, 238, 292
FatI	CATG	4 cut(s)	16, 95, 236, 290
Fnu4HI	GCNGC	2 cut(s)	126, 270
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	126, 270
FspBI	CTAG	2 cut(s)	122, 319
GluI	GCNGC	2 cut(s)	126, 270
GsaI	CCCAGC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	20, 99, 240, 294
HphI	GGTGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	78, 248
HpyAV	CCTTC	2 cut(s)	245, 249
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	3 cut(s)	16, 24, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	3 cut(s)	162, 186, 219
Hsp92II	CATG	4 cut(s)	20, 99, 240, 294
Kzo9I	GATC	1 cut(s)	74
LpnPI	CCDG	4 cut(s)	18, 132, 261, 279
Lsp1109I	GCAGC	2 cut(s)	137, 256
MaeI	CTAG	2 cut(s)	122, 319
MaeIII	GTNAC	2 cut(s)	142, 239
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	82
MnlI	CCTC	2 cut(s)	38, 295
Mph1103I	ATGCAT	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	295
MspA1I	CMGCKG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	4 cut(s)	20, 99, 240, 294
NmuCI	GTSAC	2 cut(s)	142, 239
NsiI	ATGCAT	1 cut(s)	18
NspI	RCATGY	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	127, 271
PspFI	CCCAGC	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	295
SatI	GCNGC	2 cut(s)	126, 270
Sau3AI	GATC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	5 cut(s)	12, 178, 260, 271, 314
SfcI	CTRYAG	2 cut(s)	169, 228
SmiMI	CAYNNNNRTG	1 cut(s)	295
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	2 cut(s)	122, 319
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	6
TasI	AATT	1 cut(s)	82
TscAI	CASTG	1 cut(s)	173
TseFI	GTSAC	2 cut(s)	142, 239
TseI	GCWGC	2 cut(s)	125, 269
Tsp45I	GTSAC	2 cut(s)	142, 239
TspDTI	ATGAA	2 cut(s)	84, 190
TspRI	CASTG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	240
XspI	CTAG	2 cut(s)	122, 319
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.