Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Reverse (-)

35461949 .. 35462733

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0309400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGCGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATAGTAGATCCATTAATCTCAACTTTGGTTCCACTGATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAAGAGATTGAAACCCTTCCATTGTTCCCCATGCATGGTGAGGACATCTTGGGCATCATGAAGACTACTTCCGAGAGAGGTAGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACAGAGATGCAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0008150 GO:0008324 GO:0015075 GO:0015086 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0034755 GO:0042592 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070574 GO:0070838 GO:0071421 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

203

Amino Acids

22.49

Weight (kDa)

5.65

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	8.3e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	540, 549
AclWI	GGATC	6 cut(s)	118, 131, 141, 327, 340, 375
AfiI	CCNNNNNNNGG	2 cut(s)	329, 491
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	467
AhlI	ACTAGT	2 cut(s)	314, 359
AjnI	CCWGG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	3 cut(s)	7, 199, 574
AluI	AGCT	3 cut(s)	7, 199, 574
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	6 cut(s)	118, 131, 141, 327, 340, 375
Ama87I	CYCGRG	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	50, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	2 cut(s)	316, 471
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	354
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	446, 506
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	2 cut(s)	123, 332
BanII	GRGCYC	2 cut(s)	262, 576
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	62, 280
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 359
BfaI	CTAG	2 cut(s)	315, 360
BfmI	CTRYAG	2 cut(s)	168, 589
BfoI	RGCGCY	1 cut(s)	163
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	2 cut(s)	51, 294
BlpI	GCTNAGC	1 cut(s)	575
BlsI	GCNGC	2 cut(s)	52, 295
Bme1390I	CCNGG	2 cut(s)	55, 94
Bme18I	GGWCC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	6 cut(s)	102, 125, 245, 334, 355, 403
BmrFI	CCNGG	2 cut(s)	55, 94
BmsI	GCATC	2 cut(s)	519, 586
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	3 cut(s)	93, 179, 438
Bpu1102I	GCTNAGC	1 cut(s)	575
BpuEI	CTTGAG	3 cut(s)	113, 282, 590
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 491
Bse1I	ACTGG	2 cut(s)	205, 421
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	37, 428
BseLI	CCNNNNNNNGG	2 cut(s)	329, 491
BseMII	CTCAG	1 cut(s)	589
BseNI	ACTGG	2 cut(s)	205, 421
BseRI	GAGGAG	2 cut(s)	459, 462
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	62, 280
BseYI	CCCAGC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	576
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	329, 491
BsmAI	GTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	3 cut(s)	262, 306, 576
Bsp143I	GATC	7 cut(s)	112, 123, 133, 186, 332, 380, 451
Bsp1720I	GCTNAGC	1 cut(s)	575
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	2 cut(s)	540, 549
BspCNI	CTCAG	1 cut(s)	588
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	6 cut(s)	102, 125, 245, 334, 355, 403
BspPI	GGATC	6 cut(s)	118, 131, 141, 327, 340, 375
BsrI	ACTGG	2 cut(s)	205, 421
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	7 cut(s)	112, 123, 133, 186, 332, 380, 451
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	575, 609
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	37, 428
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	7 cut(s)	115, 126, 136, 189, 335, 383, 454
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	7 cut(s)	112, 123, 133, 186, 332, 380, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	546, 605
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	53, 92
BstSFI	CTRYAG	2 cut(s)	168, 589
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	62, 280
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	5 cut(s)	123, 133, 186, 332, 380
BstYI	RGATCY	5 cut(s)	123, 133, 186, 332, 380
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	37, 428
BtsIMutI	CAGTG	1 cut(s)	405
CciI	TCATGA	1 cut(s)	513
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	354
CviAII	CATG	6 cut(s)	215, 307, 487, 491, 514, 604
DdeI	CTNAG	2 cut(s)	575, 609
DpnI	GATC	7 cut(s)	114, 125, 135, 188, 334, 382, 453
DpnII	GATC	7 cut(s)	112, 123, 133, 186, 332, 380, 451
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	262, 576
Eco47I	GGWCC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	574
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	492
EcoT38I	GRGCYC	2 cut(s)	262, 576
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	6 cut(s)	218, 310, 490, 494, 517, 607
FaiI	YATR	9 cut(s)	177, 210, 216, 308, 488, 492, 515, 546, 605
FatI	CATG	6 cut(s)	214, 306, 486, 490, 513, 603
Fnu4HI	GCNGC	2 cut(s)	51, 294
FokI	GGATG	2 cut(s)	44, 415
FriOI	GRGCYC	2 cut(s)	262, 576
Fsp4HI	GCNGC	2 cut(s)	51, 294
FspBI	CTAG	2 cut(s)	315, 360
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	51, 294
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	3 cut(s)	93, 179, 438
HaeII	RGCGCY	1 cut(s)	163
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	6 cut(s)	218, 310, 490, 494, 517, 607
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	446, 506
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	5 cut(s)	110, 182, 247, 263, 514
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	482
HpyCH4V	TGCA	4 cut(s)	285, 436, 490, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	546, 605
HpyF3I	CTNAG	2 cut(s)	575, 609
Hsp92II	CATG	6 cut(s)	218, 310, 490, 494, 517, 607
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	112, 123, 133, 186, 332, 380, 451
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	62, 280
LweI	GCATC	2 cut(s)	519, 586
MaeI	CTAG	2 cut(s)	315, 360
MalI	GATC	7 cut(s)	114, 125, 135, 188, 334, 382, 453
MboI	GATC	7 cut(s)	112, 123, 133, 186, 332, 380, 451
MboII	GAAGA	2 cut(s)	289, 529
MflI	RGATCY	5 cut(s)	123, 133, 186, 332, 380
MhlI	GDGCHC	3 cut(s)	262, 306, 576
MluCI	AATT	1 cut(s)	346
Mph1103I	ATGCAT	1 cut(s)	492
MroXI	GAANNNNTTC	2 cut(s)	316, 471
MseI	TTAA	2 cut(s)	156, 387
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	55, 94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	546, 605
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	7 cut(s)	112, 123, 133, 186, 332, 380, 451
NlaIII	CATG	6 cut(s)	218, 310, 490, 494, 517, 607
NlaIV	GGNNCC	6 cut(s)	102, 125, 245, 334, 355, 403
NsiI	ATGCAT	1 cut(s)	492
NspI	RCATGY	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	261
PagI	TCATGA	1 cut(s)	513
PciI	ACATGT	1 cut(s)	214
PdmI	GAANNNNTTC	2 cut(s)	316, 471
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	2 cut(s)	52, 295
PscI	ACATGT	1 cut(s)	214
PshBI	ATTAAT	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	6 cut(s)	102, 125, 245, 334, 355, 403
PspPI	GGNCC	1 cut(s)	354
PsuI	RGATCY	5 cut(s)	123, 133, 186, 332, 380
PvuII	CAGCTG	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	156, 387
SatI	GCNGC	2 cut(s)	51, 294
Sau3AI	GATC	7 cut(s)	112, 123, 133, 186, 332, 380, 451
Sau96I	GGNCC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	55, 94
SduI	GDGCHC	3 cut(s)	262, 306, 576
SetI	ASST	6 cut(s)	9, 98, 201, 284, 538, 576
SfaNI	GCATC	2 cut(s)	519, 586
SfcI	CTRYAG	2 cut(s)	168, 589
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	4 cut(s)	128, 261, 297, 569
SmoI	CTYRAG	4 cut(s)	128, 261, 297, 569
SpeI	ACTAGT	2 cut(s)	314, 359
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	2 cut(s)	540, 549
SspMI	CTAG	2 cut(s)	315, 360
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	2 cut(s)	53, 92
StyI	CCWWGG	1 cut(s)	306
TaqI	TCGA	2 cut(s)	27, 262
TasI	AATT	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	2 cut(s)	156, 387
Tru9I	TTAA	2 cut(s)	156, 387
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	2 cut(s)	50, 293
TspDTI	ATGAA	2 cut(s)	290, 530
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	354
VspI	ATTAAT	1 cut(s)	387
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	2 cut(s)	316, 471
XspI	CTAG	2 cut(s)	315, 360
Zsp2I	ATGCAT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.