Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Forward (+)

66917390 .. 66925620

Gene Structure 8231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG492800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTCGAGAGGATTGCCGAAGTGCTTAGTCTAAATGTTCGAACTGCATTGAACCTTGCGTTTAGTGGATTGAAAGATTTCAGTGGTGGTTTTGAAAGCGCGGAGCTTTCGGTGATTCTGTGCAATGATGAGTGTATGAGAAAACATAACAAGGAATGGAGAGACGAGGACCGTGCTCCTAGTGTTGTTTCCAAGTCCAAGCATGTGCCTGGTCTTAAGATTCCAAATGTTGTGTTGGGTGACATTCTGATTTCTGTTGAGATGGTGGCAAGGCAAGCAGAGCAAAGAGGCCACACACTTCTTGATGAGATGTGCCTTCTCATGAACGAAACTCACACGAATCCGCCGGAGGAGGGAGTGATGTGGCAGAGGAAGCGGTTGTTGATGCAGCGGAGGATTCGGCAGAGGGAGAATGAGGCGACGATGGTGACGACGACGATGAGGAGGATGATGAGAATGCTCGGACTTAAGGTTTTCAAGGTCAATGAGCGGTTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_3 UPF0054

Protein Analysis

166

Amino Acids

19.18

Weight (kDa)

9.18

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YbeY	PF02130	31 - 108	1.5e-13	Endoribonuclease YbeY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	490
AccII	CGCG	1 cut(s)	101
AciI	CCGC	5 cut(s)	101, 344, 376, 391, 490
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflII	CTTAAG	2 cut(s)	215, 467
AgsI	TTSAA	4 cut(s)	52, 73, 95, 478
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	156
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	388
Asp700I	GAANNNNTTC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	124, 251, 439
AsuII	TTCGAA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	2 cut(s)	256, 418
BcgI	CGANNNNNNTGC	3 cut(s)	30, 155, 189
BciT130I	CCWGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	180
BfrI	CTTAAG	2 cut(s)	215, 467
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	130
BseRI	GAGGAG	2 cut(s)	365, 457
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	1 cut(s)	291
Bsp119I	TTCGAA	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	178
BspACI	CCGC	5 cut(s)	101, 344, 376, 391, 490
BspANI	GGCC	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	321
BspT104I	TTCGAA	1 cut(s)	40
BspTI	CTTAAG	2 cut(s)	215, 467
BsrBI	CCGCTC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	173
BstAFI	CTTAAG	2 cut(s)	215, 467
BstBI	TTCGAA	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	101
BstMAI	GTCTC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 280, 373
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	453
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	169
CviAII	CATG	2 cut(s)	203, 322
CviJI	RGCY	2 cut(s)	106, 291
CviKI_1	RGCY	2 cut(s)	106, 291
DdeI	CTNAG	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	2 cut(s)	206, 325
FaiI	YATR	4 cut(s)	137, 147, 204, 323
FatI	CATG	2 cut(s)	202, 321
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	1 cut(s)	460
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	206, 325
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	4 cut(s)	115, 220, 340, 397
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	3 cut(s)	124, 251, 439
Hpy188I	TCNGA	2 cut(s)	249, 464
Hpy188III	TCNNGA	3 cut(s)	7, 302, 322
Hpy99I	CGWCG	3 cut(s)	424, 436, 439
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	47, 123, 388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 280, 373
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	206, 325
HspAI	GCGC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	103, 181
LpnPI	CCDG	3 cut(s)	195, 222, 360
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	239, 427
MbiI	CCGCTC	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	2 cut(s)	216, 468
MspA1I	CMGCKG	1 cut(s)	391
MspCI	CTTAAG	2 cut(s)	215, 467
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	275, 280, 373
NlaIII	CATG	2 cut(s)	206, 325
NmuCI	GTSAC	2 cut(s)	239, 427
NspI	RCATGY	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	40
PagI	TCATGA	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	428
PctI	GAATGC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	4 cut(s)	115, 220, 340, 397
PkrI	GCNGC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	216, 468
SatI	GCNGC	1 cut(s)	389
Sau96I	GGNCC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	4 cut(s)	57, 108, 474, 483
SfaNI	GCATC	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	40
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	215, 467
SmoI	CTYRAG	2 cut(s)	215, 467
SsiI	CCGC	5 cut(s)	101, 344, 376, 391, 490
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	2 cut(s)	6, 40
TfiI	GAWTC	4 cut(s)	115, 220, 340, 397
Tru1I	TTAA	2 cut(s)	216, 468
Tru9I	TTAA	2 cut(s)	216, 468
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	2 cut(s)	239, 427
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	2 cut(s)	239, 427
TspDTI	ATGAA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	88
Vha464I	CTTAAG	2 cut(s)	215, 467
VpaK11BI	GGWCC	1 cut(s)	169
XceI	RCATGY	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.