Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000279.1

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Forward (+)

15857 .. 16855

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000279.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggtttcgaagcctttgtcaggggccaagttgaagagtacattgccaccacggccgccgccatcaaatcctctcaaacagaatcttgggatgattcctaagaactccttccatggagcctttgattccagtgtccaggtactactctatttcttgaccgacctaaatctctttatcagaaaccttcccttcactattgacagtgctcagctagttgagctcttcgaaggtgctgggaatgttgagatggtcgaggcatggttatgcatgacaagactactgggagaagcagaggatttgggtttgtgtctcaccatttgggatcacgaaatttcggttgtgttgggcgacattgtgatttctgttgagatggcggcaaggcaagcagagcaaagaggccacacaattcttgatgagatgcgctttctcatggtaggactactagtgcttatatttctcttgctatatgtgacattttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000280 GO:0000910 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008574 GO:0009524 GO:0009555 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033206 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0051301 GO:0051321 GO:0051704 GO:0055046 GO:0061640 GO:0071840 GO:0080175 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

160

Amino Acids

17.82

Weight (kDa)

4.94

Isoelectric Point (pI)

27.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	56, 59, 374
AclWI	GGATC	1 cut(s)	330
AcoI	YGGCCR	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	330
AfaI	GTAC	2 cut(s)	40, 141
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	34
AhlI	ACTAGT	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	211, 220
AluI	AGCT	2 cut(s)	211, 220
Alw21I	GWGCWC	2 cut(s)	208, 222
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	330
AoxI	GGCC	3 cut(s)	24, 53, 397
ApoI	RAATTY	1 cut(s)	330
ArsI	GACNNNNNNTTYG	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	304
AsuII	TTCGAA	2 cut(s)	8, 225
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	2 cut(s)	208, 222
BccI	CCATC	3 cut(s)	70, 241, 364
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	314
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	2 cut(s)	212, 443
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	3 cut(s)	56, 59, 375
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	3 cut(s)	57, 60, 376
Bme1390I	CCNGG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	25, 118
BmrFI	CCNGG	1 cut(s)	137
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	408
BmuI	ACTGGG	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	2 cut(s)	8, 225
BsaJI	CCNNGG	2 cut(s)	50, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	129, 285
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	50, 112
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	129, 285
BseX3I	CGGCCG	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	3 cut(s)	26, 55, 399
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	208, 222
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	314
BsnI	GGCC	3 cut(s)	26, 55, 399
Bsp119I	TTCGAA	2 cut(s)	8, 225
Bsp1286I	GDGCHC	2 cut(s)	208, 222
Bsp143I	GATC	1 cut(s)	322
Bsp1720I	GCTNAGC	1 cut(s)	207
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	3 cut(s)	56, 59, 374
BspANI	GGCC	3 cut(s)	26, 55, 399
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	25, 118
BspPI	GGATC	1 cut(s)	330
BspQI	GCTCTTC	1 cut(s)	227
BspT104I	TTCGAA	2 cut(s)	8, 225
BsrDI	GCAATG	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	129, 285
BssECI	CCNNGG	2 cut(s)	50, 112
BssMI	GATC	1 cut(s)	322
BssT1I	CCWWGG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	2 cut(s)	29, 227
BstBI	TTCGAA	2 cut(s)	8, 225
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	99, 207
BstDSI	CCRYGG	2 cut(s)	50, 112
BstENI	CCTNNNNNAGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	1 cut(s)	322
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 217, 383, 388
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstZI	CGGCCG	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	26, 55, 399
BtgI	CCRYGG	2 cut(s)	50, 112
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	136, 208
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	39, 140
CviAII	CATG	4 cut(s)	113, 258, 268, 430
CviJI	RGCY	7 cut(s)	13, 26, 55, 119, 211, 220, 399
CviKI_1	RGCY	7 cut(s)	13, 26, 55, 119, 211, 220, 399
CviQI	GTAC	2 cut(s)	39, 140
DdeI	CTNAG	2 cut(s)	99, 207
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	53
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	2 cut(s)	29, 227
EarI	CTCTTC	2 cut(s)	29, 227
Ecl136II	GAGCTC	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	222
Eco52I	CGGCCG	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	4 cut(s)	116, 261, 271, 433
FaiI	YATR	8 cut(s)	114, 259, 265, 269, 431, 452, 466, 468
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	4 cut(s)	112, 257, 267, 429
Fnu4HI	GCNGC	3 cut(s)	56, 59, 375
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	56, 59, 375
FspBI	CTAG	2 cut(s)	212, 443
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	3 cut(s)	56, 59, 375
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	3 cut(s)	26, 55, 399
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	4 cut(s)	116, 261, 271, 433
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	3 cut(s)	82, 94, 125
HphI	GGTGA	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	3 cut(s)	154, 326, 410
HpyAV	CCTTC	4 cut(s)	118, 194, 199, 221
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 217, 383, 388
HpyF3I	CTNAG	2 cut(s)	99, 207
Hsp92II	CATG	4 cut(s)	116, 261, 271, 433
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	322
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	6 cut(s)	6, 122, 142, 149, 219, 266
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	2 cut(s)	212, 443
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	2 cut(s)	46, 214
MhlI	GDGCHC	2 cut(s)	208, 222
MluCI	AATT	2 cut(s)	330, 405
MnlI	CCTC	4 cut(s)	81, 247, 286, 389
Mph1103I	ATGCAT	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	4 cut(s)	52, 217, 383, 388
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	4 cut(s)	116, 261, 271, 433
NlaIV	GGNNCC	2 cut(s)	25, 118
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	269
NspV	TTCGAA	2 cut(s)	8, 225
PciSI	GCTCTTC	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	3 cut(s)	82, 94, 125
PkrI	GCNGC	3 cut(s)	57, 60, 376
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	25, 118
PspPI	GGNCC	1 cut(s)	24
RsaI	GTAC	2 cut(s)	40, 141
RsaNI	GTAC	2 cut(s)	39, 140
RseI	CAYNNNNRTG	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	227
SatI	GCNGC	3 cut(s)	56, 59, 375
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	2 cut(s)	208, 222
SetI	ASST	6 cut(s)	141, 165, 186, 213, 222, 232
SfaNI	GCATC	1 cut(s)	408
SfuI	TTCGAA	2 cut(s)	8, 225
SmiMI	CAYNNNNRTG	1 cut(s)	262
SpeI	ACTAGT	1 cut(s)	442
Sse9I	AATT	2 cut(s)	330, 405
SsiI	CCGC	3 cut(s)	56, 59, 374
SspMI	CTAG	2 cut(s)	212, 443
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	3 cut(s)	8, 225, 252
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	2 cut(s)	330, 405
TatI	WGTACW	1 cut(s)	38
TauI	GCSGC	3 cut(s)	58, 61, 377
TfiI	GAWTC	3 cut(s)	82, 94, 125
TscAI	CASTG	2 cut(s)	136, 208
TseFI	GTSAC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	469
TspRI	CASTG	2 cut(s)	136, 208
XagI	CCTNNNNNAGG	1 cut(s)	18
XapI	RAATTY	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	2 cut(s)	212, 443
Zsp2I	ATGCAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.