RLG00000019306

Metal transporter

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
50030962 .. 50036110
5149 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019306

Sequence Viewer

Length: 1554 bp
ATGGCTGCGGAAGGTTCCACTGGTGAGCAGCCACAGTTCATTGCTAGTGCTGGAAACCGAAGTTATTCAAATGCGCCGCTTATTGAGAACTCAGATACAGAGAAAATTGTTGTTCCAGATAGGACAAGCTGGAAAAATCTATTTGCCTACATGGGTCCGGGATTTCTTGTTTCAATTGCGTATATAGATCCTGGAAATTTTGAGACAGATTTACAGTCAGGGGCACAGTACAAATATGGGCTACTTTGGATAATATTAGTTGCTTCATGTGCTGCTCTTGTCATTCAGTCTCTAGCAGCCAATCTTGGGGTAGTCACAGGAAAGCATTTGGCTGAGCACTGTAGAGCTGAATATCCTAAGAAAACAAACTTCATCCTTTGGGTTCTTGCTGAGATTTCTATAGTTGCATGTGACATTCCTGAAGTGATTGGAACTGCCTTTGCATTGAACATGCTCTTCAACATACCTATATGGATTGGTGTTCTCCTGACAGGACTCAGTACATTGATGCTTCTTGCATTACAACAATATGGGGTTAGGAAACTTGAATTTTTGATTGCATTCCTTGTACTCACAATTGCTGGATGCTTCTTTGCTGAGCTTGGCTATGCAAAGCCTGCTGCTACAGAAGTTTTGGATGGGCTTTTTGTTCCCCAACTCAAAGGAAATGGTGCTACTGGTCTTGCCATCTCGCTTCTTGGTGCAATGATTCACCATACATTATTGAGTGAAAAAAAAAAAAAAATGCAAATTGCCTCCTGGTCTTACATTTGTATATGTCATGCGGAAGCATGCAGATTTTATATGGTAGAAAGTGGCTTTGCTCTCACAGTAGCCTTCTTAATTAATGTCTCCGTTATTTCCGTAAGTGGTGCAGTTTGCAATTCCTCTAGTTTGAGTGCAGAAGATCAGAAGAACTGCCAGGACCTGGATTTGAATAAAGCTTCCTTTTTACTAAGAAATGTGTTAGGTAGCTGGAGTTCCAAGCTCTTTGCTGTAGCCTTGCTGGCATCAGGTCAAAGTTCTACGATAACAGGAACATATGCAGGACAGTACGTTATGCAGGGGTTTCTTGACTTGCGACTTAGGCCATGGATTCGAAACTTCTTAACAAGATGCTTGGCAATAGTCCCTAGTTTGATTGTTGCAGTCATTGGTGGATCTGCTGGGGCTGGAAAGCTGATTATTATTGCATCAATGGGGGCATATGCCAACTCAACTGTGATTTCAGCCATCACTTGGATCATTGGTTCTCTGCTCATGGCCATCAACATATACTATTTGATGAGTGGATTTATCAAGATACTTCTTCATAGTCACTTTGAACTTGTTGGTGTCGTGTTTCTTGGAATACTTGGATTCTCAGGCATGACATTGTATTTGGCCGGAATTGTGTATCTGGTGTTCCGTAAAAATAAGGAGGCACCACATCTTCTGGCATTAACAACTCCTGAAAGCAGAGAAATGGCAAATGCACAGCTGGGTTGTCTCGCAAGAGAAGATATTGTAAACATGCAACTTCCTCAGAGGAGGTCTACTGAAGATATAGACTGA

Protein Analysis

518

Amino Acids

55.94

Weight (kDa)

7.05

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nramp PF01566 67 - 409 9.9e-93 Natural resistance-associated macrophage protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1423
AccB7I CCANNNNNTGG 2 cut(s) 928, 1239
AccI GTMKAC 1 cut(s) 1535
AciI CCGC 3 cut(s) 8, 77, 785
AclWI GGATC 3 cut(s) 182, 1168, 1250
AcoI YGGCCR 2 cut(s) 1263, 1383
AcsI RAATTY 2 cut(s) 196, 548
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 4 cut(s) 230, 502, 570, 1055
AfiI CCNNNNNNNGG 3 cut(s) 306, 928, 1239
AgsI TTSAA 7 cut(s) 69, 174, 448, 460, 548, 937, 1325
AjnI CCWGG 4 cut(s) 190, 758, 921, 927
AloI GAACNNNNNNTCC 2 cut(s) 1234, 1266
AluBI AGCT 8 cut(s) 129, 347, 601, 944, 975, 988, 1180, 1480
AluI AGCT 8 cut(s) 129, 347, 601, 944, 975, 988, 1180, 1480
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 4 cut(s) 197, 294, 856, 1493
AlwI GGATC 3 cut(s) 182, 1168, 1250
AlwNI CAGNNNCTG 1 cut(s) 928
AoxI GGCC 3 cut(s) 1088, 1263, 1383
ApeKI GCWGC 5 cut(s) 5, 28, 272, 296, 620
ApoI RAATTY 2 cut(s) 196, 548
ArsI GACNNNNNNTTYG 2 cut(s) 1363, 1395
AseI ATTAAT 1 cut(s) 846
Asp700I GAANNNNTTC 1 cut(s) 64
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 155, 925
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 35, 704
AsuII TTCGAA 1 cut(s) 1099
AvaII GGWCC 2 cut(s) 155, 925
BaeGI GKGCMC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 1265
BanI GGYRCC 1 cut(s) 1423
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 4 cut(s) 40, 259, 308, 607
BccI CCATC 4 cut(s) 632, 695, 1241, 1274
BciT130I CCWGG 4 cut(s) 192, 760, 923, 929
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 4 cut(s) 197, 294, 856, 1493
BfaI CTAG 4 cut(s) 45, 293, 891, 1134
BfmI CTRYAG 4 cut(s) 340, 399, 624, 996
BglI GCCNNNNNGGC 1 cut(s) 1007
BisI GCNGC 6 cut(s) 6, 29, 77, 273, 297, 621
BlpI GCTNAGC 2 cut(s) 333, 597
BlsI GCNGC 6 cut(s) 7, 30, 78, 274, 298, 622
Bme1390I CCNGG 5 cut(s) 159, 192, 760, 923, 929
Bme18I GGWCC 2 cut(s) 155, 925
BmgT120I GGNCC 2 cut(s) 155, 925
BmiI GGNNCC 3 cut(s) 16, 156, 1425
BmrFI CCNGG 5 cut(s) 159, 192, 760, 923, 929
BmsI GCATC 5 cut(s) 498, 575, 1019, 1106, 1202
BpmI CTGGAG 1 cut(s) 997
Bpu1102I GCTNAGC 2 cut(s) 333, 597
Bpu14I TTCGAA 1 cut(s) 1099
BpuMI CCSGG 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 1091
Bsc4I CCNNNNNNNGG 3 cut(s) 306, 928, 1239
Bse1I ACTGG 2 cut(s) 25, 682
Bse3DI GCAATG 2 cut(s) 39, 711
BseBI CCWGG 4 cut(s) 192, 760, 923, 929
BseDI CCNNGG 1 cut(s) 1091
BseGI GGATG 3 cut(s) 372, 590, 643
BseLI CCNNNNNNNGG 3 cut(s) 306, 928, 1239
BseMI GCAATG 2 cut(s) 39, 711
BseMII CTCAG 7 cut(s) 105, 324, 381, 511, 588, 1377, 1538
BseNI ACTGG 2 cut(s) 25, 682
BseRI GAGGAG 1 cut(s) 1543
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 4 cut(s) 40, 259, 308, 607
BseYI CCCAGC 2 cut(s) 1166, 1480
BsgI GTGCAG 2 cut(s) 894, 921
BshFI GGCC 3 cut(s) 1090, 1265, 1385
BshNI GGYRCC 1 cut(s) 1423
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 2 cut(s) 158, 1386
BslFI GGGAC 1 cut(s) 1115
BslI CCNNNNNNNGG 3 cut(s) 306, 928, 1239
BsmAI GTCTC 4 cut(s) 197, 294, 856, 1493
BsmFI GGGAC 1 cut(s) 1115
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 3 cut(s) 1090, 1265, 1385
Bsp119I TTCGAA 1 cut(s) 1099
Bsp1286I GDGCHC 2 cut(s) 226, 339
Bsp143I GATC 4 cut(s) 187, 907, 1160, 1242
Bsp1720I GCTNAGC 2 cut(s) 333, 597
Bsp19I CCATGG 1 cut(s) 1091
BspACI CCGC 3 cut(s) 8, 77, 785
BspANI GGCC 3 cut(s) 1090, 1265, 1385
BspCNI CTCAG 7 cut(s) 104, 325, 382, 510, 589, 1376, 1537
BspLI GGNNCC 3 cut(s) 16, 156, 1425
BspPI GGATC 3 cut(s) 182, 1168, 1250
BspQI GCTCTTC 1 cut(s) 461
BspT104I TTCGAA 1 cut(s) 1099
BspT107I GGYRCC 1 cut(s) 1423
BsrDI GCAATG 2 cut(s) 39, 711
BsrI ACTGG 2 cut(s) 25, 682
BssECI CCNNGG 1 cut(s) 1091
BssMI GATC 4 cut(s) 187, 907, 1160, 1242
BssT1I CCWWGG 1 cut(s) 1091
Bst2UI CCWGG 4 cut(s) 192, 760, 923, 929
Bst4CI ACNGT 7 cut(s) 36, 216, 228, 341, 832, 1053, 1222
Bst6I CTCTTC 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 617
BstBI TTCGAA 1 cut(s) 1099
BstC8I GCNNGC 3 cut(s) 618, 793, 1008
BstDSI CCRYGG 1 cut(s) 1091
BstF5I GGATG 3 cut(s) 372, 590, 643
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 4 cut(s) 190, 910, 1163, 1245
BstMAI GTCTC 4 cut(s) 197, 294, 856, 1493
BstMBI GATC 4 cut(s) 187, 907, 1160, 1242
BstMWI GCNNNNNNNGC 4 cut(s) 269, 617, 1007, 1087
BstNI CCWGG 4 cut(s) 192, 760, 923, 929
BstNSI RCATGY 4 cut(s) 411, 454, 795, 1516
BstSCI CCNGG 5 cut(s) 157, 190, 758, 921, 927
BstSFI CTRYAG 4 cut(s) 340, 399, 624, 996
BstSLI GKGCMC 1 cut(s) 226
BstV1I GCAGC 4 cut(s) 40, 259, 308, 607
BstX2I RGATCY 2 cut(s) 187, 1160
BstYI RGATCY 2 cut(s) 187, 1160
BsuRI GGCC 3 cut(s) 1090, 1265, 1385
BtgI CCRYGG 1 cut(s) 1091
BtsCI GGATG 3 cut(s) 372, 590, 643
BtsIMutI CAGTG 2 cut(s) 18, 337
Cac8I GCNNGC 3 cut(s) 618, 793, 1008
CaiI CAGNNNCTG 1 cut(s) 928
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 155, 925
Csp6I GTAC 4 cut(s) 229, 501, 569, 1054
CviQI GTAC 4 cut(s) 229, 501, 569, 1054
DpnI GATC 4 cut(s) 189, 909, 1162, 1244
DpnII GATC 4 cut(s) 187, 907, 1160, 1242
EaeI YGGCCR 2 cut(s) 1263, 1383
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 1091
Eco47I GGWCC 2 cut(s) 155, 925
Eco57I CTGAAG 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 925
EcoRII CCWGG 4 cut(s) 190, 758, 921, 927
EcoT14I CCWWGG 1 cut(s) 1091
ErhI CCWWGG 1 cut(s) 1091
FaqI GGGAC 1 cut(s) 1115
FauNDI CATATG 2 cut(s) 1042, 1207
FblI GTMKAC 1 cut(s) 1535
Fnu4HI GCNGC 6 cut(s) 6, 29, 77, 273, 297, 621
FokI GGATG 3 cut(s) 359, 597, 650
Fsp4HI GCNGC 6 cut(s) 6, 29, 77, 273, 297, 621
FspBI CTAG 4 cut(s) 45, 293, 891, 1134
GlaI GCGC 1 cut(s) 75
GluI GCNGC 6 cut(s) 6, 29, 77, 273, 297, 621
GsaI CCCAGC 2 cut(s) 1170, 1484
GsuI CTGGAG 1 cut(s) 997
HaeIII GGCC 3 cut(s) 1090, 1265, 1385
HapII CCGG 2 cut(s) 158, 1386
HhaI GCGC 1 cut(s) 76
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 942
HinfI GANTC 4 cut(s) 495, 709, 1096, 1359
HpaII CCGG 2 cut(s) 158, 1386
HphI GGTGA 2 cut(s) 35, 704
Hpy166II GTNNAC 2 cut(s) 1510, 1536
Hpy188I TCNGA 3 cut(s) 94, 912, 1527
Hpy188III TCNNGA 6 cut(s) 116, 419, 487, 1073, 1300, 1451
Hpy8I GTNNAC 2 cut(s) 1510, 1536
HpyAV CCTTC 2 cut(s) 5, 847
HpyCH4III ACNGT 7 cut(s) 36, 216, 228, 341, 832, 1053, 1222
HpyCH4IV ACGT 1 cut(s) 1056
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 617, 1007, 1087
HpySE526I ACGT 1 cut(s) 1056
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 4 cut(s) 187, 907, 1160, 1242
LguI GCTCTTC 1 cut(s) 461
Lsp1109I GCAGC 4 cut(s) 40, 259, 308, 607
LweI GCATC 5 cut(s) 498, 575, 1019, 1106, 1202
MaeI CTAG 4 cut(s) 45, 293, 891, 1134
MaeII ACGT 1 cut(s) 1056
MaeIII GTNAC 3 cut(s) 313, 410, 1316
MalI GATC 4 cut(s) 189, 909, 1162, 1244
MboI GATC 4 cut(s) 187, 907, 1160, 1242
MboII GAAGA 7 cut(s) 448, 917, 925, 1301, 1424, 1511, 1553
MfeI CAATTG 2 cut(s) 174, 576
MflI RGATCY 2 cut(s) 187, 1160
MhlI GDGCHC 2 cut(s) 226, 339
MlsI TGGCCA 1 cut(s) 1265
MluCI AATT 9 cut(s) 105, 174, 196, 548, 576, 750, 843, 883, 1389
MluNI TGGCCA 1 cut(s) 1265
MlyI GAGTC 1 cut(s) 489
MnlI CCTC 6 cut(s) 766, 898, 1414, 1521, 1524, 1533
Mox20I TGGCCA 1 cut(s) 1265
MroXI GAANNNNTTC 1 cut(s) 64
MscI TGGCCA 1 cut(s) 1265
MseI TTAA 4 cut(s) 842, 846, 1109, 1442
Msp20I TGGCCA 1 cut(s) 1265
MspA1I CMGCKG 1 cut(s) 1480
MspI CCGG 2 cut(s) 158, 1386
MspR9I CCNGG 5 cut(s) 159, 192, 760, 923, 929
MunI CAATTG 2 cut(s) 174, 576
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 4 cut(s) 192, 760, 923, 929
MwoI GCNNNNNNNGC 4 cut(s) 269, 617, 1007, 1087
NciI CCSGG 1 cut(s) 159
NcoI CCATGG 1 cut(s) 1091
NdeI CATATG 2 cut(s) 1042, 1207
NdeII GATC 4 cut(s) 187, 907, 1160, 1242
NlaIV GGNNCC 3 cut(s) 16, 156, 1425
NmuCI GTSAC 3 cut(s) 313, 410, 1316
NspI RCATGY 4 cut(s) 411, 454, 795, 1516
NspV TTCGAA 1 cut(s) 1099
PacI TTAATTAA 1 cut(s) 846
PaeI GCATGC 1 cut(s) 795
PciSI GCTCTTC 1 cut(s) 461
PctI GAATGC 1 cut(s) 560
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 3 cut(s) 709, 1096, 1359
PflMI CCANNNNNTGG 2 cut(s) 928, 1239
PfoI TCCNGGA 2 cut(s) 157, 190
PkrI GCNGC 6 cut(s) 7, 30, 78, 274, 298, 622
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
PpuMI RGGWCCY 1 cut(s) 925
PshBI ATTAAT 1 cut(s) 846
Psp5II RGGWCCY 1 cut(s) 925
Psp6I CCWGG 4 cut(s) 190, 758, 921, 927
PspFI CCCAGC 2 cut(s) 1166, 1480
PspGI CCWGG 4 cut(s) 190, 758, 921, 927
PspN4I GGNNCC 3 cut(s) 16, 156, 1425
PspPI GGNCC 2 cut(s) 155, 925
PspPPI RGGWCCY 1 cut(s) 925
PsrI GAACNNNNNNTAC 4 cut(s) 964, 996, 1388, 1420
PstNI CAGNNNCTG 1 cut(s) 928
PsuI RGATCY 2 cut(s) 187, 1160
PvuII CAGCTG 1 cut(s) 1480
RsaI GTAC 4 cut(s) 230, 502, 570, 1055
RsaNI GTAC 4 cut(s) 229, 501, 569, 1054
SapI GCTCTTC 1 cut(s) 461
SaqAI TTAA 4 cut(s) 842, 846, 1109, 1442
SatI GCNGC 6 cut(s) 6, 29, 77, 273, 297, 621
Sau3AI GATC 4 cut(s) 187, 907, 1160, 1242
Sau96I GGNCC 2 cut(s) 155, 925
SchI GAGTC 1 cut(s) 489
ScrFI CCNGG 5 cut(s) 159, 192, 760, 923, 929
SduI GDGCHC 2 cut(s) 226, 339
SfaNI GCATC 5 cut(s) 498, 575, 1019, 1106, 1202
SfcI CTRYAG 4 cut(s) 340, 399, 624, 996
SfuI TTCGAA 1 cut(s) 1099
SinI GGWCC 2 cut(s) 155, 925
SphI GCATGC 1 cut(s) 795
Sse9I AATT 9 cut(s) 105, 174, 196, 548, 576, 750, 843, 883, 1389
SsiI CCGC 3 cut(s) 8, 77, 785
SspI AATATT 1 cut(s) 255
SspMI CTAG 4 cut(s) 45, 293, 891, 1134
StyD4I CCNGG 5 cut(s) 157, 190, 758, 921, 927
StyI CCWWGG 1 cut(s) 1091
TaaI ACNGT 7 cut(s) 36, 216, 228, 341, 832, 1053, 1222
TaiI ACGT 1 cut(s) 1059
TaqI TCGA 1 cut(s) 1099
TasI AATT 9 cut(s) 105, 174, 196, 548, 576, 750, 843, 883, 1389
TatI WGTACW 3 cut(s) 228, 500, 568
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 3 cut(s) 709, 1096, 1359
Tru1I TTAA 4 cut(s) 842, 846, 1109, 1442
Tru9I TTAA 4 cut(s) 842, 846, 1109, 1442
TscAI CASTG 2 cut(s) 25, 344
TseFI GTSAC 3 cut(s) 313, 410, 1316
TseI GCWGC 5 cut(s) 5, 28, 272, 296, 620
Tsp45I GTSAC 3 cut(s) 313, 410, 1316
TspDTI ATGAA 4 cut(s) 28, 255, 361, 1301
TspGWI ACGGA 3 cut(s) 844, 853, 1397
TspRI CASTG 2 cut(s) 25, 344
Van91I CCANNNNNTGG 2 cut(s) 928, 1239
VpaK11BI GGWCC 2 cut(s) 155, 925
VspI ATTAAT 1 cut(s) 846
XapI RAATTY 2 cut(s) 196, 548
XceI RCATGY 4 cut(s) 411, 454, 795, 1516
XmiI GTMKAC 1 cut(s) 1535
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 4 cut(s) 45, 293, 891, 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.