Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037233.1

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1908

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037233.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 610 bp

tgagcttggctatgcaaagcctgctgctacagaagttttggatgggctttttgttccccaactcaaaggaaatggtgctaccggtcttgccatctcgcttcttggtgctatggttatgccgcacaatctcttccttcactctgcattggtgctttctaggaaaataccacgatctgttcgcggaatcaatgaagcatgcagattttatatggtagaaagtggctttgctctcacggtagccttcttaattaatgtctccgttatttccgtaagtggtgcagtttgcaattcctctagtttgagtgcagaagatcagaagaactgccaggacctggatttgaataaagcttcctttttactaagaaatgtgttaggtagctggagttccaaactctttgctgtcgccttgctggcatcaggtcaaagttctactataacaggaacatatgcaggacagtacgttatgcagggttttcttgatttgcgacttaggccatggattcgaaacttcttaacaagatgcttggcaatagtccctagtttgattgttgcagtcattggtggatctgctggggctggaaagctgattattattgcatcagtaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0008150 GO:0008324 GO:0015075 GO:0015086 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0034755 GO:0042592 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070574 GO:0070838 GO:0071421 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

202

Amino Acids

21.39

Weight (kDa)

9.55

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccII	CGCG	1 cut(s)	181
AciI	CCGC	2 cut(s)	120, 181
AclWI	GGATC	1 cut(s)	572
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgeI	ACCGGT	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	2 cut(s)	325, 331
AluBI	AGCT	4 cut(s)	5, 348, 379, 584
AluI	AGCT	4 cut(s)	5, 348, 379, 584
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	572
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	1 cut(s)	24
AseI	ATTAAT	1 cut(s)	250
AsiGI	ACCGGT	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	2 cut(s)	36, 99
BciT130I	CCWGG	2 cut(s)	327, 333
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	3 cut(s)	157, 295, 538
BfmI	CTRYAG	1 cut(s)	28
BglI	GCCNNNNNGGC	1 cut(s)	411
BisI	GCNGC	2 cut(s)	25, 120
BlsI	GCNGC	2 cut(s)	26, 121
Bme1390I	CCNGG	2 cut(s)	327, 333
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmrFI	CCNGG	2 cut(s)	327, 333
BmsI	GCATC	3 cut(s)	423, 510, 606
BpmI	CTGGAG	1 cut(s)	401
Bpu14I	TTCGAA	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	327, 333
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	570
BsgI	GTGCAG	2 cut(s)	298, 325
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	494
BshTI	ACCGGT	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	494
Bsp119I	TTCGAA	1 cut(s)	503
Bsp143I	GATC	3 cut(s)	171, 311, 564
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	2 cut(s)	120, 181
BspANI	GGCC	1 cut(s)	494
BspFNI	CGCG	1 cut(s)	181
BspPI	GGATC	1 cut(s)	572
BspT104I	TTCGAA	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	3 cut(s)	171, 311, 564
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	327, 333
Bst4CI	ACNGT	2 cut(s)	236, 457
Bst6I	CTCTTC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	22, 197, 412
BstDEI	CTNAG	2 cut(s)	360, 489
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	181
BstKTI	GATC	3 cut(s)	174, 314, 567
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	3 cut(s)	171, 311, 564
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 411, 491
BstNI	CCWGG	2 cut(s)	327, 333
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	325, 331
BstSFI	CTRYAG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	564
BsuRI	GGCC	1 cut(s)	494
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	47
Cac8I	GCNNGC	3 cut(s)	22, 197, 412
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	458
CspAI	ACCGGT	1 cut(s)	81
CviAII	CATG	2 cut(s)	196, 496
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	2 cut(s)	360, 489
DpnI	GATC	3 cut(s)	173, 313, 566
DpnII	GATC	3 cut(s)	171, 311, 564
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	325, 331
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	2 cut(s)	199, 499
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	2 cut(s)	195, 495
FauNDI	CATATG	1 cut(s)	446
Fnu4HI	GCNGC	2 cut(s)	25, 120
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	25, 120
FspBI	CTAG	3 cut(s)	157, 295, 538
GluI	GCNGC	2 cut(s)	25, 120
GsaI	CCCAGC	1 cut(s)	574
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	2 cut(s)	199, 499
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	2 cut(s)	184, 500
HpaII	CCGG	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	1 cut(s)	477
HpyAV	CCTTC	2 cut(s)	144, 251
HpyCH4III	ACNGT	2 cut(s)	236, 457
HpyCH4IV	ACGT	1 cut(s)	460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 411, 491
HpyF3I	CTNAG	2 cut(s)	360, 489
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	2 cut(s)	199, 499
Kzo9I	GATC	3 cut(s)	171, 311, 564
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	3 cut(s)	423, 510, 606
MaeI	CTAG	3 cut(s)	157, 295, 538
MaeII	ACGT	1 cut(s)	460
MalI	GATC	3 cut(s)	173, 313, 566
MboI	GATC	3 cut(s)	171, 311, 564
MboII	GAAGA	3 cut(s)	122, 321, 329
MflI	RGATCY	1 cut(s)	564
MluCI	AATT	2 cut(s)	247, 287
MnlI	CCTC	1 cut(s)	302
MseI	TTAA	3 cut(s)	246, 250, 513
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	327, 333
MvaI	CCWGG	2 cut(s)	327, 333
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	3 cut(s)	21, 411, 491
NcoI	CCATGG	1 cut(s)	495
NdeI	CATATG	1 cut(s)	446
NdeII	GATC	3 cut(s)	171, 311, 564
NlaIII	CATG	2 cut(s)	199, 499
NspI	RCATGY	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	503
PacI	TTAATTAA	1 cut(s)	250
PaeI	GCATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	184, 500
PflMI	CCANNNNNTGG	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	26, 121
PpuMI	RGGWCCY	1 cut(s)	329
PshBI	ATTAAT	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	325, 331
PspFI	CCCAGC	1 cut(s)	570
PspGI	CCWGG	2 cut(s)	325, 331
PspPI	GGNCC	1 cut(s)	329
PspPPI	RGGWCCY	1 cut(s)	329
PsrI	GAACNNNNNNTAC	2 cut(s)	368, 400
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	564
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SaqAI	TTAA	3 cut(s)	246, 250, 513
SatI	GCNGC	2 cut(s)	25, 120
Sau3AI	GATC	3 cut(s)	171, 311, 564
Sau96I	GGNCC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	327, 333
SetI	ASST	8 cut(s)	7, 334, 350, 377, 381, 422, 463, 586
SfaNI	GCATC	3 cut(s)	423, 510, 606
SfcI	CTRYAG	1 cut(s)	28
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	1 cut(s)	329
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	2 cut(s)	247, 287
SsiI	CCGC	2 cut(s)	120, 181
SspMI	CTAG	3 cut(s)	157, 295, 538
StyD4I	CCNGG	2 cut(s)	325, 331
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	236, 457
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	1 cut(s)	503
TasI	AATT	2 cut(s)	247, 287
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	184, 500
Tru1I	TTAA	3 cut(s)	246, 250, 513
Tru9I	TTAA	3 cut(s)	246, 250, 513
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	205
TspGWI	ACGGA	2 cut(s)	248, 257
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	329
VspI	ATTAAT	1 cut(s)	250
XceI	RCATGY	1 cut(s)	199
XspI	CTAG	3 cut(s)	157, 295, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.