Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Reverse (-)

73692995 .. 73695254

Gene Structure 2260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTCGAGGTTATGCATGACTGCAAGACTACGGGAGAAGCGAGAGGATTTGGGTTTGTGTCTCACCATTTGGGATCACGAAATGTTACGTTTGGTGGATTGAAAGATTTCAGTGGTGCTTTTGAAAGCGCAGAGCTTTTGGTGATTTTGTGCAATGATGAATTTATGAGAAAAAGTAACAAGGAATGGAGAGACGAGGACCGTGCTACTAGTGTTGTTTCCAAGTCCAAGCATGTGCCTGGTCTTAAGATTCCAAATGTTGTGTTGGGTGACTTTGTGATTTCTGTTCGTATGGCGGCGGGGCAAGCAGAGCAAAGAGGCCACACACTTCTTGATGAGATGCGCCTTCTCATGCTACTTTGGATAATATTAGTTGCTTCATGTGCTGCTCTTGTTATTCCGCCTCTAGCAGCCAATCTTGGGGTAGTCACGGCAAGCGATATGGCAATCCGAAAGCATTTGGCTGAGCACCGTAGAGCTAAATATCCTAAGAAAACAAACTTCATCCTTTGGGTTCTTGCCGAGATTTCTATAGTTGCATGTGACATTCCCGAAGTGATTGGAACTGCCTTTGCATTGAACATGCTCTTCAATATACCTATATGGATTGGTATTCTCTTGACAGGACTCAATACATTGATGCTTCTTGCATTACAACAATATGGGGTTAGGAAACTTGAATTTTTGATTGCGTTCCTTGTACTCACAATTGCTGGATGCTTCTTTATTGAGCTTGGCTATGCAAAGCCTATGCTACGTGTTCGGAATTCTCACCCTTTCTTCTCTCGATCTGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0008150 GO:0008324 GO:0015075 GO:0015086 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0034755 GO:0042592 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070574 GO:0070838 GO:0071421 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

266

Amino Acids

29.53

Weight (kDa)

8.93

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YbeY	PF02130	42 - 118	9.5e-11	Endoribonuclease YbeY
Nramp	PF01566	119 - 251	1.2e-33	Natural resistance-associated macrophage protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	296, 299, 401
AclWI	GGATC	1 cut(s)	82
AcsI	RAATTY	3 cut(s)	161, 680, 766
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflII	CTTAAG	1 cut(s)	245
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	5 cut(s)	103, 125, 580, 592, 680
AhlI	ACTAGT	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	3 cut(s)	136, 479, 733
AluI	AGCT	3 cut(s)	136, 479, 733
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	2 cut(s)	66, 186
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	386, 410
ApoI	RAATTY	3 cut(s)	161, 680, 766
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	2 cut(s)	131, 345
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	4 cut(s)	56, 154, 281, 764
AvaII	GGWCC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	373, 422
BceAI	ACGGC	1 cut(s)	447
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	66, 186
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	2 cut(s)	210, 407
BfmI	CTRYAG	1 cut(s)	531
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	3 cut(s)	297, 387, 411
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	3 cut(s)	298, 388, 412
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	3 cut(s)	330, 630, 707
Bpu1102I	GCTNAGC	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	758
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse3DI	GCAATG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	504, 722
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	373, 422
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	2 cut(s)	66, 186
BsmBI	CGTCTC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	74, 788
Bsp1720I	GCTNAGC	1 cut(s)	465
BspACI	CCGC	3 cut(s)	296, 299, 401
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	457
BspPI	GGATC	1 cut(s)	82
BspQI	GCTCTTC	1 cut(s)	593
BspTI	CTTAAG	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	160
BssMI	GATC	2 cut(s)	74, 788
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	203, 473
Bst6I	CTCTTC	1 cut(s)	593
BstAFI	CTTAAG	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	306, 436
BstDEI	CTNAG	2 cut(s)	465, 489
BstF5I	GGATG	2 cut(s)	504, 722
BstHHI	GCGC	2 cut(s)	131, 345
BstKTI	GATC	2 cut(s)	77, 791
BstMAI	GTCTC	2 cut(s)	66, 186
BstMBI	GATC	2 cut(s)	74, 788
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 310, 383
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	3 cut(s)	236, 543, 586
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	2 cut(s)	373, 422
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	504, 722
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	306, 436
CfoI	GCGC	2 cut(s)	131, 345
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	6 cut(s)	17, 233, 352, 381, 540, 583
CviJI	RGCY	8 cut(s)	136, 321, 413, 464, 479, 733, 738, 748
CviKI_1	RGCY	8 cut(s)	136, 321, 413, 464, 479, 733, 738, 748
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	2 cut(s)	465, 489
DpnI	GATC	2 cut(s)	76, 790
DpnII	GATC	2 cut(s)	74, 788
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
EciI	GGCGGA	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	6 cut(s)	20, 236, 355, 384, 543, 586
FatI	CATG	6 cut(s)	16, 232, 351, 380, 539, 582
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	297, 387, 411
FokI	GGATG	2 cut(s)	491, 729
Fsp4HI	GCNGC	3 cut(s)	297, 387, 411
FspBI	CTAG	2 cut(s)	210, 407
GlaI	GCGC	2 cut(s)	130, 344
GluI	GCNGC	3 cut(s)	297, 387, 411
HaeIII	GGCC	1 cut(s)	321
HhaI	GCGC	2 cut(s)	131, 345
Hin1II	CATG	6 cut(s)	20, 236, 355, 384, 543, 586
Hin6I	GCGC	2 cut(s)	129, 343
HinP1I	GCGC	2 cut(s)	129, 343
HinfI	GANTC	2 cut(s)	250, 627
HphI	GGTGA	4 cut(s)	56, 154, 281, 764
Hpy188I	TCNGA	2 cut(s)	452, 765
Hpy188III	TCNNGA	5 cut(s)	78, 332, 551, 619, 786
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	2 cut(s)	203, 473
HpyCH4IV	ACGT	2 cut(s)	89, 757
HpyCH4V	TGCA	7 cut(s)	16, 24, 153, 539, 575, 650, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 310, 383
HpyF3I	CTNAG	2 cut(s)	465, 489
HpySE526I	ACGT	2 cut(s)	89, 757
Hsp92II	CATG	6 cut(s)	20, 236, 355, 384, 543, 586
HspAI	GCGC	2 cut(s)	129, 343
Kzo9I	GATC	2 cut(s)	74, 788
LguI	GCTCTTC	1 cut(s)	593
LpnPI	CCDG	4 cut(s)	225, 252, 609, 699
Lsp1109I	GCAGC	2 cut(s)	373, 422
LweI	GCATC	3 cut(s)	330, 630, 707
MaeI	CTAG	2 cut(s)	210, 407
MaeII	ACGT	2 cut(s)	89, 757
MaeIII	GTNAC	5 cut(s)	85, 176, 269, 427, 542
MalI	GATC	2 cut(s)	76, 790
MboI	GATC	2 cut(s)	74, 788
MboII	GAAGA	2 cut(s)	580, 772
MfeI	CAATTG	1 cut(s)	708
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	4 cut(s)	161, 680, 708, 766
MlyI	GAGTC	1 cut(s)	621
MnlI	CCTC	4 cut(s)	38, 190, 311, 414
Mph1103I	ATGCAT	1 cut(s)	18
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	2 cut(s)	246, 799
MspCI	CTTAAG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	3 cut(s)	305, 310, 383
NdeII	GATC	2 cut(s)	74, 788
NlaIII	CATG	6 cut(s)	20, 236, 355, 384, 543, 586
NmeAIII	GCCGAG	1 cut(s)	547
NmuCI	GTSAC	3 cut(s)	269, 427, 542
NsiI	ATGCAT	1 cut(s)	18
NspI	RCATGY	3 cut(s)	236, 543, 586
PciSI	GCTCTTC	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	298, 388, 412
PleI	GAGTC	1 cut(s)	621
PpsI	GAGTC	1 cut(s)	621
Ppu21I	YACGTR	1 cut(s)	758
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	199
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
SapI	GCTCTTC	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	246, 799
SatI	GCNGC	3 cut(s)	297, 387, 411
Sau3AI	GATC	2 cut(s)	74, 788
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	621
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	7 cut(s)	12, 92, 138, 481, 601, 735, 760
SfaNI	GCATC	3 cut(s)	330, 630, 707
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	4 cut(s)	161, 680, 708, 766
SsiI	CCGC	3 cut(s)	296, 299, 401
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	2 cut(s)	210, 407
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	203, 473
TaiI	ACGT	2 cut(s)	92, 760
TaqI	TCGA	2 cut(s)	6, 787
TasI	AATT	4 cut(s)	161, 680, 708, 766
TatI	WGTACW	1 cut(s)	700
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	246, 799
Tru9I	TTAA	2 cut(s)	246, 799
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	3 cut(s)	269, 427, 542
TseI	GCWGC	2 cut(s)	386, 410
Tsp45I	GTSAC	3 cut(s)	269, 427, 542
TspDTI	ATGAA	3 cut(s)	174, 369, 493
TspRI	CASTG	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	3 cut(s)	161, 680, 766
XceI	RCATGY	3 cut(s)	236, 543, 586
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	2 cut(s)	210, 407
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.