Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Reverse (-)

36102155 .. 36108122

Gene Structure 5968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTGCGGCAGGTTCCACTGGTGAGCAGCCACAGTTCATTGCTAGTGCTGGAAACCGAAGTTATTCAAATGCACCGCTTATTGAGAACTCAGATAGAGAGAAAATTGTTGTTCCAGATCTACTTTGGATAATATTAGTTGCTTCATGTGCCGCTCTTGTCATTCAGTCTCTAGCAGCCAATCTTGGGGTAGTCACAGGCAATGCAGGAAAGCATTTGGCTGAGCACTGTAGAGCTGAATATCCTAAGAAAACAAACTTCATCCTTTGGGTTCTTGCTGAGATTTCTATAGTTGCATGTGACATCCCTGAAGTGATTGGAACTGCCTTTGCATTGAACATGCTCTTCAATATACCTATATGGATTGGTGTTCTCCTGACAGGACTCAGTACATTGATGCTTCTTGCATTACAACAATATGGGGAAGCATGCAGATTTTATATGGTAGAAAGTGGCTTTGCTCTCACGGTAGCCTTCTTAATTAATGTCTCCGTTATTTCCGTAAGTGGTGCAGTTTGCAATTCCTCTAGTTTGAGTGCAGAAGATCAGAAGAACTGCCAGGACCTGGATTTGAATAAAGCTTCCTTTTTACTAAGAAATGTGTTAGGTAGCTGGAGTTCCAAACTCTTTGCTGTAGCCTTGCTGGCATCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGACAGTACGTTATGCAGGGGTTTCTTGATTTGCGACTTAGGCCATGGATTCGAAACTTCTTAACACGATGCTTGGCAATAGTCCCTAGTTTGATTGTTGCAGTCATTGGTGGATCTTCTGGGGCTGGAAAGCTGATTATTATTGCATCAATTTCAGCCATCACTTGGATCATTGGTTCTCTGCTCATGGCCATCAACATATACTATTTGATGAGTGGATTCATCAAGATACTTCTTCATAGTCACTTTGAACTTGTTGGTGTCGTGTTTCTTGGAATACTTGGATTCTCAGGCATGACATTGTATTTGGCCGGAATTGTGTATCTGGTGTTCCGTAAAAATAAGGAGGCACCACATCTTCTGGCATTAACAACTCCTGAAAGCAGAGAAATGGCAAATGCACAGCTGGGTTGTCTCGCAAGAGAAGATATCGAAAGCATGCAACTTCCTCAGAGGAGGTCTACTGAAGATATAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0008150 GO:0008324 GO:0015075 GO:0015086 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0034755 GO:0042592 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070574 GO:0070838 GO:0071421 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

387

Amino Acids

41.74

Weight (kDa)

6.23

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nramp	PF01566	41 - 141	1.8e-29	Natural resistance-associated macrophage protein-like
Nramp	PF01566	142 - 281	5.1e-31	Natural resistance-associated macrophage protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
AccB1I	GGYRCC	1 cut(s)	1033
AccB7I	CCANNNNNTGG	2 cut(s)	565, 849
AccBSI	CCGCTC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	1145
AciI	CCGC	3 cut(s)	8, 77, 153
AclWI	GGATC	2 cut(s)	805, 860
AcoI	YGGCCR	2 cut(s)	873, 993
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	2 cut(s)	391, 692
AfiI	CCNNNNNNNGG	3 cut(s)	186, 565, 849
AgsI	TTSAA	5 cut(s)	69, 337, 349, 574, 935
AjnI	CCWGG	2 cut(s)	558, 564
AloI	GAACNNNNNNTCC	2 cut(s)	844, 876
AluBI	AGCT	5 cut(s)	236, 581, 612, 817, 1090
AluI	AGCT	5 cut(s)	236, 581, 612, 817, 1090
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	3 cut(s)	174, 493, 1103
AlwI	GGATC	2 cut(s)	805, 860
AlwNI	CAGNNNCTG	1 cut(s)	565
AoxI	GGCC	3 cut(s)	725, 873, 993
ApeKI	GCWGC	3 cut(s)	5, 28, 176
ArsI	GACNNNNNNTTYG	2 cut(s)	973, 1005
AseI	ATTAAT	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	562
AsuHPI	GGTGA	1 cut(s)	35
AsuII	TTCGAA	1 cut(s)	736
AvaII	GGWCC	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	875
BanI	GGYRCC	1 cut(s)	1033
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	40, 188
BccI	CCATC	2 cut(s)	851, 884
BciT130I	CCWGG	2 cut(s)	560, 566
BcoDI	GTCTC	3 cut(s)	174, 493, 1103
BfaI	CTAG	4 cut(s)	45, 173, 528, 771
BfmI	CTRYAG	3 cut(s)	229, 288, 633
BfuAI	ACCTGC	1 cut(s)	2
BglI	GCCNNNNNGGC	1 cut(s)	644
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	5 cut(s)	6, 9, 29, 153, 177
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	5 cut(s)	7, 10, 30, 154, 178
Bme1390I	CCNGG	2 cut(s)	560, 566
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	2 cut(s)	16, 1035
BmrFI	CCNGG	2 cut(s)	560, 566
BmsI	GCATC	4 cut(s)	387, 656, 743, 839
BpmI	CTGGAG	1 cut(s)	634
Bpu1102I	GCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	736
BsaJI	CCNNGG	1 cut(s)	728
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 565, 849
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	2 cut(s)	39, 208
BseBI	CCWGG	2 cut(s)	560, 566
BseDI	CCNNGG	1 cut(s)	728
BseGI	GGATG	2 cut(s)	261, 303
BseLI	CCNNNNNNNGG	3 cut(s)	186, 565, 849
BseMI	GCAATG	2 cut(s)	39, 208
BseMII	CTCAG	6 cut(s)	105, 213, 270, 400, 987, 1148
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	1153
BseXI	GCAGC	2 cut(s)	40, 188
BseYI	CCCAGC	1 cut(s)	1090
BsgI	GTGCAG	2 cut(s)	531, 558
BshFI	GGCC	3 cut(s)	727, 875, 995
BshNI	GGYRCC	1 cut(s)	1033
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	996
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	3 cut(s)	186, 565, 849
BsmAI	GTCTC	3 cut(s)	174, 493, 1103
BsmFI	GGGAC	1 cut(s)	752
BsnI	GGCC	3 cut(s)	727, 875, 995
Bsp119I	TTCGAA	1 cut(s)	736
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	118, 544, 797, 852
Bsp1720I	GCTNAGC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	728
BspACI	CCGC	3 cut(s)	8, 77, 153
BspANI	GGCC	3 cut(s)	727, 875, 995
BspCNI	CTCAG	6 cut(s)	104, 214, 271, 399, 986, 1147
BspLI	GGNNCC	2 cut(s)	16, 1035
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	2 cut(s)	805, 860
BspQI	GCTCTTC	1 cut(s)	350
BspT104I	TTCGAA	1 cut(s)	736
BspT107I	GGYRCC	1 cut(s)	1033
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	39, 208
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	728
BssMI	GATC	4 cut(s)	118, 544, 797, 852
BssT1I	CCWWGG	1 cut(s)	728
Bst2UI	CCWGG	2 cut(s)	560, 566
Bst4CI	ACNGT	4 cut(s)	36, 230, 469, 690
Bst6I	CTCTTC	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	736
BstC8I	GCNNGC	3 cut(s)	430, 645, 1124
BstDEI	CTNAG	9 cut(s)	91, 222, 246, 279, 386, 593, 722, 973, 1134
BstDSI	CCRYGG	1 cut(s)	728
BstF5I	GGATG	2 cut(s)	261, 303
BstKTI	GATC	4 cut(s)	121, 547, 800, 855
BstMAI	GTCTC	3 cut(s)	174, 493, 1103
BstMBI	GATC	4 cut(s)	118, 544, 797, 852
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 644, 724
BstNI	CCWGG	2 cut(s)	560, 566
BstNSI	RCATGY	4 cut(s)	300, 343, 432, 1126
BstSCI	CCNGG	2 cut(s)	558, 564
BstSFI	CTRYAG	3 cut(s)	229, 288, 633
BstV1I	GCAGC	2 cut(s)	40, 188
BstX2I	RGATCY	2 cut(s)	118, 797
BstYI	RGATCY	2 cut(s)	118, 797
BsuRI	GGCC	3 cut(s)	727, 875, 995
BtgI	CCRYGG	1 cut(s)	728
BtsCI	GGATG	2 cut(s)	261, 303
BtsIMutI	CAGTG	2 cut(s)	18, 226
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	3 cut(s)	430, 645, 1124
CaiI	CAGNNNCTG	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	390, 691
CviAII	CATG	8 cut(s)	147, 297, 340, 429, 729, 871, 979, 1123
CviQI	GTAC	2 cut(s)	390, 691
DdeI	CTNAG	9 cut(s)	91, 222, 246, 279, 386, 593, 722, 973, 1134
DpnI	GATC	4 cut(s)	120, 546, 799, 854
DpnII	GATC	4 cut(s)	118, 544, 797, 852
EaeI	YGGCCR	2 cut(s)	873, 993
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	728
Eco32I	GATATC	1 cut(s)	1114
Eco47I	GGWCC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRII	CCWGG	2 cut(s)	558, 564
EcoRV	GATATC	1 cut(s)	1114
EcoT14I	CCWWGG	1 cut(s)	728
ErhI	CCWWGG	1 cut(s)	728
FaeI	CATG	8 cut(s)	150, 300, 343, 432, 732, 874, 982, 1126
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	8 cut(s)	146, 296, 339, 428, 728, 870, 978, 1122
FauNDI	CATATG	1 cut(s)	679
FblI	GTMKAC	1 cut(s)	1145
Fnu4HI	GCNGC	5 cut(s)	6, 9, 29, 153, 177
FokI	GGATG	2 cut(s)	248, 290
Fsp4HI	GCNGC	5 cut(s)	6, 9, 29, 153, 177
FspBI	CTAG	4 cut(s)	45, 173, 528, 771
GluI	GCNGC	5 cut(s)	6, 9, 29, 153, 177
GsaI	CCCAGC	1 cut(s)	1094
GsuI	CTGGAG	1 cut(s)	634
HaeIII	GGCC	3 cut(s)	727, 875, 995
HapII	CCGG	1 cut(s)	996
Hin1II	CATG	8 cut(s)	150, 300, 343, 432, 732, 874, 982, 1126
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	4 cut(s)	384, 733, 903, 969
HpaII	CCGG	1 cut(s)	996
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	1146
Hpy188I	TCNGA	3 cut(s)	94, 549, 1137
Hpy188III	TCNNGA	5 cut(s)	116, 376, 710, 910, 1061
Hpy8I	GTNNAC	1 cut(s)	1146
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	4 cut(s)	36, 230, 469, 690
HpyCH4IV	ACGT	1 cut(s)	693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 644, 724
HpyF3I	CTNAG	9 cut(s)	91, 222, 246, 279, 386, 593, 722, 973, 1134
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	8 cut(s)	150, 300, 343, 432, 732, 874, 982, 1126
Kzo9I	GATC	4 cut(s)	118, 544, 797, 852
LguI	GCTCTTC	1 cut(s)	350
Lsp1109I	GCAGC	2 cut(s)	40, 188
LweI	GCATC	4 cut(s)	387, 656, 743, 839
MaeI	CTAG	4 cut(s)	45, 173, 528, 771
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	3 cut(s)	193, 299, 926
MalI	GATC	4 cut(s)	120, 546, 799, 854
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	4 cut(s)	118, 544, 797, 852
MboII	GAAGA	8 cut(s)	337, 554, 562, 792, 911, 1034, 1121, 1163
MflI	RGATCY	2 cut(s)	118, 797
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	875
MluCI	AATT	5 cut(s)	105, 480, 520, 834, 999
MluNI	TGGCCA	1 cut(s)	875
MlyI	GAGTC	1 cut(s)	378
MnlI	CCTC	5 cut(s)	535, 1024, 1131, 1134, 1143
Mox20I	TGGCCA	1 cut(s)	875
MroXI	GAANNNNTTC	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	875
MseI	TTAA	4 cut(s)	479, 483, 746, 1052
Msp20I	TGGCCA	1 cut(s)	875
MspA1I	CMGCKG	1 cut(s)	1090
MspI	CCGG	1 cut(s)	996
MspR9I	CCNGG	2 cut(s)	560, 566
MvaI	CCWGG	2 cut(s)	560, 566
MwoI	GCNNNNNNNGC	3 cut(s)	149, 644, 724
NcoI	CCATGG	1 cut(s)	728
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	4 cut(s)	118, 544, 797, 852
NlaIII	CATG	8 cut(s)	150, 300, 343, 432, 732, 874, 982, 1126
NlaIV	GGNNCC	2 cut(s)	16, 1035
NmuCI	GTSAC	3 cut(s)	193, 299, 926
NspI	RCATGY	4 cut(s)	300, 343, 432, 1126
NspV	TTCGAA	1 cut(s)	736
PacI	TTAATTAA	1 cut(s)	483
PaeI	GCATGC	2 cut(s)	432, 1126
PciSI	GCTCTTC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	3 cut(s)	733, 903, 969
PflMI	CCANNNNNTGG	2 cut(s)	565, 849
PkrI	GCNGC	5 cut(s)	7, 10, 30, 154, 178
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
PpuMI	RGGWCCY	1 cut(s)	562
PshBI	ATTAAT	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	558, 564
PspFI	CCCAGC	1 cut(s)	1090
PspGI	CCWGG	2 cut(s)	558, 564
PspN4I	GGNNCC	2 cut(s)	16, 1035
PspPI	GGNCC	1 cut(s)	562
PspPPI	RGGWCCY	1 cut(s)	562
PsrI	GAACNNNNNNTAC	4 cut(s)	601, 633, 998, 1030
PstNI	CAGNNNCTG	1 cut(s)	565
PsuI	RGATCY	2 cut(s)	118, 797
PvuII	CAGCTG	1 cut(s)	1090
RsaI	GTAC	2 cut(s)	391, 692
RsaNI	GTAC	2 cut(s)	390, 691
SapI	GCTCTTC	1 cut(s)	350
SaqAI	TTAA	4 cut(s)	479, 483, 746, 1052
SatI	GCNGC	5 cut(s)	6, 9, 29, 153, 177
Sau3AI	GATC	4 cut(s)	118, 544, 797, 852
Sau96I	GGNCC	1 cut(s)	562
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	560, 566
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	4 cut(s)	387, 656, 743, 839
SfcI	CTRYAG	3 cut(s)	229, 288, 633
SfuI	TTCGAA	1 cut(s)	736
SinI	GGWCC	1 cut(s)	562
SphI	GCATGC	2 cut(s)	432, 1126
Sse9I	AATT	5 cut(s)	105, 480, 520, 834, 999
SsiI	CCGC	3 cut(s)	8, 77, 153
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	4 cut(s)	45, 173, 528, 771
StyD4I	CCNGG	2 cut(s)	558, 564
StyI	CCWWGG	1 cut(s)	728
TaaI	ACNGT	4 cut(s)	36, 230, 469, 690
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	2 cut(s)	736, 1116
TasI	AATT	5 cut(s)	105, 480, 520, 834, 999
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	2 cut(s)	11, 155
TfiI	GAWTC	3 cut(s)	733, 903, 969
Tru1I	TTAA	4 cut(s)	479, 483, 746, 1052
Tru9I	TTAA	4 cut(s)	479, 483, 746, 1052
TscAI	CASTG	2 cut(s)	25, 233
TseFI	GTSAC	3 cut(s)	193, 299, 926
TseI	GCWGC	3 cut(s)	5, 28, 176
Tsp45I	GTSAC	3 cut(s)	193, 299, 926
TspDTI	ATGAA	5 cut(s)	28, 135, 250, 895, 911
TspGWI	ACGGA	3 cut(s)	481, 490, 1007
TspRI	CASTG	2 cut(s)	25, 233
Van91I	CCANNNNNTGG	2 cut(s)	565, 849
VpaK11BI	GGWCC	1 cut(s)	562
VspI	ATTAAT	1 cut(s)	483
XceI	RCATGY	4 cut(s)	300, 343, 432, 1126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	123
XmiI	GTMKAC	1 cut(s)	1145
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	4 cut(s)	45, 173, 528, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.