Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Forward (+)

46478933 .. 46484309

Gene Structure 5377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG345100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCTGCGGAACGTTCCACTGGTGAGCAGCCACAGTTCATTGCTAGTGCTGGAAACCGAAGTTACTCAAATGCGCCGCTTATTGAGAACTCAGATACAGAGAAAATTGTTGTTCCAGATAGGACAAGCTGGAAAAATCTATTTGCCTACATGGGTCCGGGATTTCTTGTTTCAATTGCATATATAGATCCTGGAAATTTTGAGACAGATTTACAGTCAGGGGCACAGTACAAATATGGGCTACTTTGGATAATATTAGTTGCTTCATGTGCTGCACTTGTCATTCAGTCTCTAGCAGCCAATCTTGGGGTAGTCACAGGAAAGCATTTGGCTGAGCACTGTAGAGCTGAATATCCTAAGAAAACAAACTTCATCCTTTGGGTTCTTGCTGAGATTTCTATAGTTGCATGTGACATTCCTGAAGTGATTGGAACTGCCTTTGCATTGAACATGCTCTTCAATATACCTATATGGATTGGTGTTCTCCTGACAGGACTCAGTACATTGATGCTTCTTGCATTACAACAATATGGGGTTAGGAAACTTGAATTTTTGATTGCATTCCTTGTACTCACAATTGCTGGATGCTTCTTTGCTGAGCTTGGCTATGCAAAGCCTGCTGCTACAGAAGTTTTGGATGGGCTTTTTGTTCCCCAACTCAAAGGAAATGGTGCTACTGGTCTTGCCATCTCGCTTCTTGGTGCTATGGTTATGCCGCACAATCTCTTCCTTCACTCTGCATTGGTGCTTTCTAGGAAAATACCACGATCTGTTCGCGGAATCAATGAAGCATGCAGATTTTATATGGTAGAAAGTGGCTTTGCTCTCACGGTAGCCTTCTTAATTAATGTCTCCGTTATTTCCGTAAGTGGTGCAGTTTGCAATTCCTCTAGTTTGAGTGCAGAAGATCAGAAGAACTGCCAGGACCTGGATTTGAATAAAGCTTCCTTTTTACTAAGAAATGTGTTAGGTAGCTGGAGTTCCAAACTCTTTGCTGTAGCTTTGCTGGCATCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGACAGTACGTTATGCAGGGGTTTCTTGATTTGCGACTTAGGCCATGGATTCGAAACTTCTTAACAAGATGCTTGGCAATAGTCCCTAGTTTGATTGTTGCAGTCATTGGTGGATCTGCTGGGGCTGGAAAGCTGATTATTATAGCATCAGTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0008150 GO:0008324 GO:0015075 GO:0015086 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0034755 GO:0042592 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070574 GO:0070838 GO:0071421 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

401

Amino Acids

43.11

Weight (kDa)

8.56

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nramp	PF01566	67 - 400	2.3e-105	Natural resistance-associated macrophage protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	928
AccII	CGCG	1 cut(s)	777
AciI	CCGC	4 cut(s)	8, 77, 716, 777
AclI	AACGTT	1 cut(s)	13
AclWI	GGATC	2 cut(s)	182, 1168
AcsI	RAATTY	2 cut(s)	196, 548
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	4 cut(s)	230, 502, 570, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	306, 928
AgsI	TTSAA	5 cut(s)	174, 448, 460, 548, 937
AjnI	CCWGG	3 cut(s)	190, 921, 927
AluBI	AGCT	7 cut(s)	129, 347, 601, 944, 975, 1001, 1180
AluI	AGCT	7 cut(s)	129, 347, 601, 944, 975, 1001, 1180
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	3 cut(s)	197, 294, 856
AlwI	GGATC	2 cut(s)	182, 1168
AlwNI	CAGNNNCTG	1 cut(s)	928
AoxI	GGCC	1 cut(s)	1088
ApeKI	GCWGC	5 cut(s)	5, 28, 272, 296, 620
ApoI	RAATTY	2 cut(s)	196, 548
AseI	ATTAAT	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	155, 925
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	35
AsuII	TTCGAA	1 cut(s)	1099
AvaII	GGWCC	2 cut(s)	155, 925
BaeGI	GKGCMC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	4 cut(s)	40, 259, 308, 607
BccI	CCATC	2 cut(s)	632, 695
BciT130I	CCWGG	3 cut(s)	192, 923, 929
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	3 cut(s)	197, 294, 856
BfaI	CTAG	5 cut(s)	45, 293, 753, 891, 1134
BfmI	CTRYAG	4 cut(s)	340, 399, 624, 996
BisI	GCNGC	7 cut(s)	6, 29, 77, 273, 297, 621, 716
BlpI	GCTNAGC	2 cut(s)	333, 597
BlsI	GCNGC	7 cut(s)	7, 30, 78, 274, 298, 622, 717
Bme1390I	CCNGG	4 cut(s)	159, 192, 923, 929
Bme18I	GGWCC	2 cut(s)	155, 925
BmgT120I	GGNCC	2 cut(s)	155, 925
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	4 cut(s)	159, 192, 923, 929
BmsI	GCATC	5 cut(s)	498, 575, 1019, 1106, 1202
BpmI	CTGGAG	1 cut(s)	997
Bpu1102I	GCTNAGC	2 cut(s)	333, 597
Bpu14I	TTCGAA	1 cut(s)	1099
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	1091
Bsc4I	CCNNNNNNNGG	2 cut(s)	306, 928
Bse1I	ACTGG	2 cut(s)	25, 682
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	3 cut(s)	192, 923, 929
BseDI	CCNNGG	1 cut(s)	1091
BseGI	GGATG	3 cut(s)	372, 590, 643
BseLI	CCNNNNNNNGG	2 cut(s)	306, 928
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	5 cut(s)	105, 324, 381, 511, 588
BseNI	ACTGG	2 cut(s)	25, 682
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	4 cut(s)	40, 259, 308, 607
BseYI	CCCAGC	1 cut(s)	1166
BsgI	GTGCAG	3 cut(s)	258, 894, 921
Bsh1236I	CGCG	1 cut(s)	777
BshFI	GGCC	1 cut(s)	1090
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	1115
BslI	CCNNNNNNNGG	2 cut(s)	306, 928
BsmAI	GTCTC	3 cut(s)	197, 294, 856
BsmFI	GGGAC	1 cut(s)	1115
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	1 cut(s)	1090
Bsp119I	TTCGAA	1 cut(s)	1099
Bsp1286I	GDGCHC	2 cut(s)	226, 339
Bsp143I	GATC	4 cut(s)	187, 767, 907, 1160
Bsp1720I	GCTNAGC	2 cut(s)	333, 597
Bsp19I	CCATGG	1 cut(s)	1091
BspACI	CCGC	4 cut(s)	8, 77, 716, 777
BspANI	GGCC	1 cut(s)	1090
BspCNI	CTCAG	5 cut(s)	104, 325, 382, 510, 589
BspFNI	CGCG	1 cut(s)	777
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	182, 1168
BspQI	GCTCTTC	1 cut(s)	461
BspT104I	TTCGAA	1 cut(s)	1099
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	25, 682
BssECI	CCNNGG	1 cut(s)	1091
BssMI	GATC	4 cut(s)	187, 767, 907, 1160
BssT1I	CCWWGG	1 cut(s)	1091
Bst2UI	CCWGG	3 cut(s)	192, 923, 929
Bst4CI	ACNGT	6 cut(s)	36, 216, 228, 341, 832, 1053
Bst6I	CTCTTC	2 cut(s)	461, 731
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstBI	TTCGAA	1 cut(s)	1099
BstC8I	GCNNGC	3 cut(s)	618, 793, 1008
BstDEI	CTNAG	8 cut(s)	91, 333, 357, 390, 497, 597, 956, 1085
BstDSI	CCRYGG	1 cut(s)	1091
BstF5I	GGATG	3 cut(s)	372, 590, 643
BstFNI	CGCG	1 cut(s)	777
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	4 cut(s)	190, 770, 910, 1163
BstMAI	GTCTC	3 cut(s)	197, 294, 856
BstMBI	GATC	4 cut(s)	187, 767, 907, 1160
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 617, 1007, 1087
BstNI	CCWGG	3 cut(s)	192, 923, 929
BstNSI	RCATGY	3 cut(s)	411, 454, 795
BstSCI	CCNGG	4 cut(s)	157, 190, 921, 927
BstSFI	CTRYAG	4 cut(s)	340, 399, 624, 996
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	777
BstV1I	GCAGC	4 cut(s)	40, 259, 308, 607
BstX2I	RGATCY	2 cut(s)	187, 1160
BstYI	RGATCY	2 cut(s)	187, 1160
BsuRI	GGCC	1 cut(s)	1090
BtgI	CCRYGG	1 cut(s)	1091
BtsCI	GGATG	3 cut(s)	372, 590, 643
BtsIMutI	CAGTG	2 cut(s)	18, 337
Cac8I	GCNNGC	3 cut(s)	618, 793, 1008
CaiI	CAGNNNCTG	1 cut(s)	928
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	155, 925
Csp6I	GTAC	4 cut(s)	229, 501, 569, 1054
CviAII	CATG	6 cut(s)	151, 267, 408, 451, 792, 1092
CviQI	GTAC	4 cut(s)	229, 501, 569, 1054
DdeI	CTNAG	8 cut(s)	91, 333, 357, 390, 497, 597, 956, 1085
DpnI	GATC	4 cut(s)	189, 769, 909, 1162
DpnII	GATC	4 cut(s)	187, 767, 907, 1160
Eam1104I	CTCTTC	2 cut(s)	461, 731
EarI	CTCTTC	2 cut(s)	461, 731
Eco130I	CCWWGG	1 cut(s)	1091
Eco47I	GGWCC	2 cut(s)	155, 925
Eco57I	CTGAAG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	925
EcoRII	CCWGG	3 cut(s)	190, 921, 927
EcoT14I	CCWWGG	1 cut(s)	1091
ErhI	CCWWGG	1 cut(s)	1091
FaeI	CATG	6 cut(s)	154, 270, 411, 454, 795, 1095
FaqI	GGGAC	1 cut(s)	1115
FatI	CATG	6 cut(s)	150, 266, 407, 450, 791, 1091
FauNDI	CATATG	1 cut(s)	1042
Fnu4HI	GCNGC	7 cut(s)	6, 29, 77, 273, 297, 621, 716
FokI	GGATG	3 cut(s)	359, 597, 650
Fsp4HI	GCNGC	7 cut(s)	6, 29, 77, 273, 297, 621, 716
FspBI	CTAG	5 cut(s)	45, 293, 753, 891, 1134
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	7 cut(s)	6, 29, 77, 273, 297, 621, 716
GsaI	CCCAGC	1 cut(s)	1170
GsuI	CTGGAG	1 cut(s)	997
HaeIII	GGCC	1 cut(s)	1090
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	6 cut(s)	154, 270, 411, 454, 795, 1095
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	942
HinfI	GANTC	3 cut(s)	495, 780, 1096
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	94, 912
Hpy188III	TCNNGA	4 cut(s)	116, 419, 487, 1073
HpyAV	CCTTC	2 cut(s)	740, 847
HpyCH4III	ACNGT	6 cut(s)	36, 216, 228, 341, 832, 1053
HpyCH4IV	ACGT	2 cut(s)	13, 1056
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 617, 1007, 1087
HpyF3I	CTNAG	8 cut(s)	91, 333, 357, 390, 497, 597, 956, 1085
HpySE526I	ACGT	2 cut(s)	13, 1056
Hsp92II	CATG	6 cut(s)	154, 270, 411, 454, 795, 1095
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	4 cut(s)	187, 767, 907, 1160
LguI	GCTCTTC	1 cut(s)	461
Lsp1109I	GCAGC	4 cut(s)	40, 259, 308, 607
LweI	GCATC	5 cut(s)	498, 575, 1019, 1106, 1202
MaeI	CTAG	5 cut(s)	45, 293, 753, 891, 1134
MaeII	ACGT	2 cut(s)	13, 1056
MaeIII	GTNAC	3 cut(s)	62, 313, 410
MalI	GATC	4 cut(s)	189, 769, 909, 1162
MboI	GATC	4 cut(s)	187, 767, 907, 1160
MboII	GAAGA	4 cut(s)	448, 718, 917, 925
MfeI	CAATTG	2 cut(s)	174, 576
MflI	RGATCY	2 cut(s)	187, 1160
MhlI	GDGCHC	2 cut(s)	226, 339
MluCI	AATT	7 cut(s)	105, 174, 196, 548, 576, 843, 883
MlyI	GAGTC	1 cut(s)	489
MnlI	CCTC	1 cut(s)	898
MseI	TTAA	3 cut(s)	842, 846, 1109
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	4 cut(s)	159, 192, 923, 929
MunI	CAATTG	2 cut(s)	174, 576
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	3 cut(s)	192, 923, 929
MvnI	CGCG	1 cut(s)	777
MwoI	GCNNNNNNNGC	4 cut(s)	269, 617, 1007, 1087
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	1091
NdeI	CATATG	1 cut(s)	1042
NdeII	GATC	4 cut(s)	187, 767, 907, 1160
NlaIII	CATG	6 cut(s)	154, 270, 411, 454, 795, 1095
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	313, 410
NspI	RCATGY	3 cut(s)	411, 454, 795
NspV	TTCGAA	1 cut(s)	1099
PacI	TTAATTAA	1 cut(s)	846
PaeI	GCATGC	1 cut(s)	795
PciSI	GCTCTTC	1 cut(s)	461
PctI	GAATGC	1 cut(s)	560
PfeI	GAWTC	2 cut(s)	780, 1096
PflMI	CCANNNNNTGG	1 cut(s)	928
PfoI	TCCNGGA	2 cut(s)	157, 190
PkrI	GCNGC	7 cut(s)	7, 30, 78, 274, 298, 622, 717
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
PpuMI	RGGWCCY	1 cut(s)	925
PshBI	ATTAAT	1 cut(s)	846
Psp1406I	AACGTT	1 cut(s)	13
Psp5II	RGGWCCY	1 cut(s)	925
Psp6I	CCWGG	3 cut(s)	190, 921, 927
PspFI	CCCAGC	1 cut(s)	1166
PspGI	CCWGG	3 cut(s)	190, 921, 927
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	155, 925
PspPPI	RGGWCCY	1 cut(s)	925
PsrI	GAACNNNNNNTAC	2 cut(s)	964, 996
PstNI	CAGNNNCTG	1 cut(s)	928
PsuI	RGATCY	2 cut(s)	187, 1160
RsaI	GTAC	4 cut(s)	230, 502, 570, 1055
RsaNI	GTAC	4 cut(s)	229, 501, 569, 1054
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	3 cut(s)	842, 846, 1109
SatI	GCNGC	7 cut(s)	6, 29, 77, 273, 297, 621, 716
Sau3AI	GATC	4 cut(s)	187, 767, 907, 1160
Sau96I	GGNCC	2 cut(s)	155, 925
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	4 cut(s)	159, 192, 923, 929
SduI	GDGCHC	2 cut(s)	226, 339
SfaNI	GCATC	5 cut(s)	498, 575, 1019, 1106, 1202
SfcI	CTRYAG	4 cut(s)	340, 399, 624, 996
SfuI	TTCGAA	1 cut(s)	1099
SinI	GGWCC	2 cut(s)	155, 925
SphI	GCATGC	1 cut(s)	795
Sse9I	AATT	7 cut(s)	105, 174, 196, 548, 576, 843, 883
SsiI	CCGC	4 cut(s)	8, 77, 716, 777
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	5 cut(s)	45, 293, 753, 891, 1134
StyD4I	CCNGG	4 cut(s)	157, 190, 921, 927
StyI	CCWWGG	1 cut(s)	1091
TaaI	ACNGT	6 cut(s)	36, 216, 228, 341, 832, 1053
TaiI	ACGT	2 cut(s)	16, 1059
TaqI	TCGA	1 cut(s)	1099
TasI	AATT	7 cut(s)	105, 174, 196, 548, 576, 843, 883
TatI	WGTACW	3 cut(s)	228, 500, 568
TauI	GCSGC	2 cut(s)	79, 718
TfiI	GAWTC	2 cut(s)	780, 1096
Tru1I	TTAA	3 cut(s)	842, 846, 1109
Tru9I	TTAA	3 cut(s)	842, 846, 1109
TscAI	CASTG	2 cut(s)	25, 344
TseFI	GTSAC	2 cut(s)	313, 410
TseI	GCWGC	5 cut(s)	5, 28, 272, 296, 620
Tsp45I	GTSAC	2 cut(s)	313, 410
TspDTI	ATGAA	4 cut(s)	28, 255, 361, 801
TspGWI	ACGGA	2 cut(s)	844, 853
TspRI	CASTG	2 cut(s)	25, 344
Van91I	CCANNNNNTGG	1 cut(s)	928
VpaK11BI	GGWCC	2 cut(s)	155, 925
VspI	ATTAAT	1 cut(s)	846
XapI	RAATTY	2 cut(s)	196, 548
XceI	RCATGY	3 cut(s)	411, 454, 795
XspI	CTAG	5 cut(s)	45, 293, 753, 891, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.