Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000712

Physical Location & Seq

Genomic Coordinates Forward (+)

15743837 .. 15746056

Gene Structure 2220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGTCGAGGTTATGCATGACCGCAAGACTACCGGGAGAAGCGAGAGGATTTGGGTTTGCGTCTCACCATTTGGGATCACCAAATCGTTTGGTGGATTGAAAGATTTCGGTGGTGCTTTTGAAAGCGCAGAGCTTTTGGTGATTTTGTGCAATGATGAATTTATGAGAAAAAGTAACAAGGAATGGAGAGACGAGGACCGTGCTACTGGTGTTGTTTCCAAGTCCAAGCATGTGCCTGGTCTTAAGATTCCAAATATGGCAGCGGGGCAAGCGGAGCAAAGAGGCCACACACTTCTTGATGAGATGCGCCTTCTCATGGTTTTCGGTGAAGAGATAATTTCTCATGGAGGAGTAGTTGTTGGCTATTATATATGTGAACTCACAGCCATAACAAGTACAGAACTTTATAACTGGAAAGAGGAAGAAAAACTCTGGGTTTTAATGGACCATAAGTTTCCTAATGTCTTTTTCCGTGCTCCACCATCTAGAACCTCCGATTATCCCGGAAAGCATTTGGCTGAGCACTATAGAGCTAAATATCCTAAGAAAACAAACTTCATCCTTTGGGTTCTTGCTGAGATTTCTATAGTTGCATGTGACATTCCTGAAGGACTCAATACATTGATGCTTCTTGCATTACAACAATATGGGGTTAGGAAACTTGAATTTTTGATTGCGTTCCTTGTACTCACAATTGCTGGATGCTTCTTTACCGAGCTTGGCTATGCAAAGCCTACTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0008150 GO:0008324 GO:0015075 GO:0015086 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0034755 GO:0042592 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070574 GO:0070838 GO:0071421 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

247

Amino Acids

28.02

Weight (kDa)

6.66

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15960 AT1G80830 AT1G80830
fragaria_vesca	FvH4_2g27530 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670 FvH4_6g28670
malus_domestica	MD00G1030300.v1.1 MD00G1042000.v1.1 MD14G1158400.v1.1 MD17G1222500.v1.1
prunus_persica	Prupe.1G492500_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1 Prupe.3G097800_v2.0.a1
pyrus_communis	pycom116g00050 pycom14g13220 pycom17g22680
rosa_chinensis	RchiOBHm_Chr2g0133071 RchiOBHm_Chr6g0271151 RchiOBHm_Chr6g0296361 RchiOBHm_Chr6g0310261
rosa_laevigata	RLG00000011698 RLG00000011701 RLG00000019306
rosa_multiflora	Rmu_sc0000127.1_g000013 Rmu_sc0000279.1_g000004 Rmu_sc0008096.1_g000001 Rmu_sc0037233.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111550 Rroxscaffold_2G00136120 Rroxscaffold_7G00176290 Rroxscaffold_7G00178510
rosa_rugosa	Rorug01G0010700 Rorug01G0010800 Rorug01G0062600 Rorug01G0087600 Rorug02G0179300 Rorug02G0309300 Rorug02G0309400 Rorug02G0309500 Rorug02G0309600 Rorug03G0345700 Rorug05G0313000 Rorug06G0261600.1
rosa_samantha	Rh2AG361900 Rh2BG367600 Rh2CG345100 Rh2DG384500 Rh3AG218600 Rh4AG271200 Rh5AG321100 Rh6AG181200 Rh6AG373200 Rh6AG492800 Rh6CG386600 Rh7DG314800
rosa_wichuraiana	Rw2G029420 Rw6G032540 Rw6G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AciI	CCGC	3 cut(s)	22, 263, 272
AclWI	GGATC	1 cut(s)	83
AcsI	RAATTY	2 cut(s)	158, 665
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	2 cut(s)	397, 687
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	100, 122, 665
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	3 cut(s)	133, 533, 718
AluI	AGCT	3 cut(s)	133, 533, 718
Alw21I	GWGCWC	2 cut(s)	478, 525
Alw26I	GTCTC	2 cut(s)	67, 183
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	2 cut(s)	158, 665
Asp700I	GAANNNNTTC	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	128, 309
AspS9I	GGNCC	2 cut(s)	196, 445
AsuC2I	CCSGG	2 cut(s)	34, 504
AsuHPI	GGTGA	4 cut(s)	57, 70, 151, 338
AvaII	GGWCC	2 cut(s)	196, 445
Bbv12I	GWGCWC	2 cut(s)	478, 525
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	1 cut(s)	490
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	34, 504
BcoDI	GTCTC	2 cut(s)	67, 183
BfaI	CTAG	2 cut(s)	486, 742
BfmI	CTRYAG	2 cut(s)	526, 585
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	1 cut(s)	261
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	3 cut(s)	34, 237, 504
Bme18I	GGWCC	2 cut(s)	196, 445
BmgT120I	GGNCC	2 cut(s)	196, 445
BmrFI	CCNGG	3 cut(s)	34, 237, 504
BmsI	GCATC	3 cut(s)	294, 615, 692
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuMI	CCSGG	2 cut(s)	34, 504
BsaXI	ACNNNNNCTCC	4 cut(s)	339, 342, 369, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	211, 416
Bse3DI	GCAATG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	558, 707
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	510, 567
BseNI	ACTGG	2 cut(s)	211, 416
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	272
BshFI	GGCC	1 cut(s)	285
BsiHKAI	GWGCWC	2 cut(s)	478, 525
BsiSI	CCGG	2 cut(s)	33, 504
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	67, 183
BsmBI	CGTCTC	2 cut(s)	67, 183
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	478, 525
Bsp143I	GATC	1 cut(s)	75
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	3 cut(s)	22, 263, 272
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	511, 568
BspPI	GGATC	1 cut(s)	83
BspTI	CTTAAG	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	211, 416
BssMI	GATC	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	3 cut(s)	519, 543, 576
BstF5I	GGATG	2 cut(s)	558, 707
BstHHI	GCGC	2 cut(s)	128, 309
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	2 cut(s)	67, 183
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 274
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	2 cut(s)	233, 597
BstSCI	CCNGG	3 cut(s)	32, 235, 502
BstSFI	CTRYAG	2 cut(s)	526, 585
BstV1I	GCAGC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	558, 707
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	2 cut(s)	128, 309
Cfr13I	GGNCC	2 cut(s)	196, 445
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	396, 686
CviAII	CATG	5 cut(s)	17, 230, 316, 344, 594
CviJI	RGCY	9 cut(s)	133, 285, 363, 386, 518, 533, 718, 723, 733
CviKI_1	RGCY	9 cut(s)	133, 285, 363, 386, 518, 533, 718, 723, 733
CviQI	GTAC	2 cut(s)	396, 686
DdeI	CTNAG	3 cut(s)	519, 543, 576
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	196, 445
Eco57I	CTGAAG	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	18
Esp3I	CGTCTC	2 cut(s)	67, 183
FaeI	CATG	5 cut(s)	20, 233, 319, 347, 597
FatI	CATG	5 cut(s)	16, 229, 315, 343, 593
FauI	CCCGC	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	2 cut(s)	545, 714
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	486, 742
GlaI	GCGC	2 cut(s)	127, 308
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	2 cut(s)	33, 504
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	128, 309
Hin1II	CATG	5 cut(s)	20, 233, 319, 347, 597
Hin6I	GCGC	2 cut(s)	126, 307
HinP1I	GCGC	2 cut(s)	126, 307
HinfI	GANTC	2 cut(s)	247, 612
HpaII	CCGG	2 cut(s)	33, 504
HphI	GGTGA	4 cut(s)	57, 70, 151, 338
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	3 cut(s)	296, 486, 605
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	2 cut(s)	320, 602
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	5 cut(s)	16, 150, 593, 635, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 274
HpyF3I	CTNAG	3 cut(s)	519, 543, 576
Hsp92II	CATG	5 cut(s)	20, 233, 319, 347, 597
HspAI	GCGC	2 cut(s)	126, 307
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	274, 481
LpnPI	CCDG	9 cut(s)	46, 192, 222, 249, 397, 418, 517, 618, 684
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	3 cut(s)	294, 615, 692
MaeI	CTAG	2 cut(s)	486, 742
MaeIII	GTNAC	2 cut(s)	173, 596
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	2 cut(s)	341, 434
MfeI	CAATTG	1 cut(s)	693
MhlI	GDGCHC	2 cut(s)	478, 525
MluCI	AATT	4 cut(s)	158, 336, 665, 693
MlyI	GAGTC	1 cut(s)	606
MnlI	CCTC	6 cut(s)	39, 187, 275, 341, 412, 502
Mph1103I	ATGCAT	1 cut(s)	18
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	2 cut(s)	243, 440
MspA1I	CMGCKG	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	2 cut(s)	33, 504
MspR9I	CCNGG	3 cut(s)	34, 237, 504
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	269, 274
NciI	CCSGG	2 cut(s)	34, 504
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	5 cut(s)	20, 233, 319, 347, 597
NmuCI	GTSAC	1 cut(s)	596
NsiI	ATGCAT	1 cut(s)	18
NspI	RCATGY	2 cut(s)	233, 597
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	196, 445
RsaI	GTAC	2 cut(s)	397, 687
RsaNI	GTAC	2 cut(s)	396, 686
SaqAI	TTAA	2 cut(s)	243, 440
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	196, 445
SchI	GAGTC	1 cut(s)	606
ScrFI	CCNGG	3 cut(s)	34, 237, 504
SduI	GDGCHC	2 cut(s)	478, 525
SetI	ASST	5 cut(s)	12, 135, 494, 535, 720
SfaNI	GCATC	3 cut(s)	294, 615, 692
SfcI	CTRYAG	2 cut(s)	526, 585
SinI	GGWCC	2 cut(s)	196, 445
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	4 cut(s)	158, 336, 665, 693
SsiI	CCGC	3 cut(s)	22, 263, 272
SspMI	CTAG	2 cut(s)	486, 742
StyD4I	CCNGG	3 cut(s)	32, 235, 502
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	6
TasI	AATT	4 cut(s)	158, 336, 665, 693
TatI	WGTACW	2 cut(s)	395, 685
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	243, 440
Tru9I	TTAA	2 cut(s)	243, 440
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	2 cut(s)	171, 547
TspGWI	ACGGA	1 cut(s)	461
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	196, 445
XapI	RAATTY	2 cut(s)	158, 665
XbaI	TCTAGA	1 cut(s)	485
XceI	RCATGY	2 cut(s)	233, 597
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	2 cut(s)	486, 742
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.